Wall clock time and date at job start Wed Apr 1 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00124 * 2 1 4 4 C 1.50703 * 119.99605 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47118 * 95.53183 * 4 2 1 6 6 C 1.36740 * 127.13784 * 95.51532 * 5 4 2 7 7 C 1.50700 * 126.34395 * 359.96754 * 6 5 4 8 8 H 1.09005 * 110.80606 * 0.98592 * 7 6 5 9 9 C 1.54809 * 110.90790 * 237.35347 * 7 6 5 10 10 C 1.54096 * 104.19219 * 220.92124 * 9 7 6 11 11 O 1.43743 * 107.29025 * 357.97408 * 10 9 7 12 12 C 1.44420 * 107.00412 * 26.48524 * 11 10 9 13 13 N 1.30286 * 107.30786 * 180.23104 * 6 5 4 14 14 N 1.28530 * 110.05592 * 359.77069 * 13 6 5 15 15 C 1.31221 * 109.85891 * 0.02562 * 14 13 6 16 16 N 1.38579 * 126.47517 * 179.97438 * 15 14 13 17 17 C 1.46849 * 110.99721 * 105.22473 * 16 15 14 18 18 C 1.53036 * 109.52374 * 174.16417 * 17 16 15 19 19 C 1.53116 * 109.28138 * 59.17335 * 18 17 16 20 20 C 1.53123 * 109.16229 * 302.35018 * 19 18 17 21 21 H 1.08999 * 109.49762 * 297.67467 * 20 19 18 22 22 C 1.50697 * 109.50046 * 177.59400 * 20 19 18 23 23 H 1.08003 * 119.99509 * 239.99336 * 22 20 19 24 24 C 1.37872 * 120.00358 * 60.00407 * 22 20 19 25 25 N 1.31514 * 119.99997 * 180.02562 * 24 22 20 26 26 Si 1.86802 * 119.99815 * 359.97438 * 24 22 20 27 27 H 1.48507 * 109.46782 * 270.00248 * 26 24 22 28 28 H 1.48496 * 109.46977 * 30.00305 * 26 24 22 29 29 H 1.48501 * 109.47033 * 150.00575 * 26 24 22 30 30 C 1.46845 * 111.00146 * 341.01397 * 16 15 14 31 31 H 1.08002 * 119.99986 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99625 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.46872 * 266.40271 * 3 2 1 34 34 H 1.09000 * 109.46806 * 26.40330 * 3 2 1 35 35 H 1.09003 * 109.46667 * 146.40455 * 3 2 1 36 36 H 1.08999 * 109.47206 * 335.53474 * 4 2 1 37 37 H 1.09004 * 109.47242 * 215.53031 * 4 2 1 38 38 H 1.08994 * 110.48808 * 339.60816 * 9 7 6 39 39 H 1.09008 * 110.48343 * 102.11830 * 9 7 6 40 40 H 1.09002 * 109.87485 * 117.39697 * 10 9 7 41 41 H 1.09002 * 109.87969 * 238.55131 * 10 9 7 42 42 H 1.09001 * 110.65285 * 201.47857 * 12 11 10 43 43 H 1.08998 * 110.60041 * 78.46910 * 12 11 10 44 44 H 1.09000 * 109.46620 * 54.14444 * 17 16 15 45 45 H 1.09010 * 109.45153 * 294.17012 * 17 16 15 46 46 H 1.08997 * 109.49905 * 299.23422 * 18 17 16 47 47 H 1.08997 * 109.53799 * 179.13908 * 18 17 16 48 48 H 1.09001 * 109.52442 * 182.44022 * 19 18 17 49 49 H 1.09002 * 109.57139 * 62.28438 * 19 18 17 50 50 H 0.97005 * 119.99743 * 180.02562 * 25 24 22 51 51 H 1.09006 * 109.46185 * 65.82260 * 30 16 15 52 52 H 1.09001 * 109.45899 * 305.85404 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4229 -1.6609 -1.3756 6 6 3.6073 -1.4088 -2.0108 7 6 4.8032 -0.7042 -1.4239 8 1 4.6160 -0.4213 -0.3880 9 6 5.1880 0.5316 -2.2732 10 6 6.7280 0.4965 -2.3151 11 8 7.1516 -0.6235 -1.5198 12 6 6.0738 -1.5847 -1.5360 13 7 3.5081 -1.8855 -3.2192 14 7 2.3523 -2.4219 -3.3880 15 6 1.6461 -2.3147 -2.2873 16 7 0.3538 -2.7743 -2.0896 17 6 0.3472 -3.9846 -1.2579 18 6 -1.0969 -4.3792 -0.9404 19 6 -1.8513 -4.6320 -2.2486 20 6 -1.7880 -3.3723 -3.1169 21 1 -2.2845 -2.5501 -2.6017 22 6 -2.4776 -3.6322 -4.4314 23 1 -1.9277 -3.5424 -5.3566 24 6 -3.8104 -3.9844 -4.4530 25 7 -4.4119 -4.2117 -5.6001 26 14 -4.7613 -4.1401 -2.8526 27 1 -4.6573 -5.5331 -2.3486 28 1 -4.1941 -3.2061 -1.8470 29 1 -6.1883 -3.8049 -3.0902 30 6 -0.3238 -3.0071 -3.3713 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9354 0.0004 33 1 2.3010 1.5874 -1.0256 34 1 1.4481 2.0799 0.4570 35 1 2.9866 1.1916 0.5687 36 1 1.4350 -2.0877 0.4247 37 1 2.9694 -1.2020 0.5967 38 1 4.7769 0.4463 -3.2790 39 1 4.8383 1.4468 -1.7953 40 1 7.0680 0.3708 -3.3431 41 1 7.1313 1.4199 -1.8994 42 1 6.1488 -2.2607 -0.6842 43 1 6.0723 -2.1434 -2.4718 44 1 0.8832 -3.7900 -0.3290 45 1 0.8358 -4.7973 -1.7957 46 1 -1.5819 -3.5725 -0.3907 47 1 -1.1025 -5.2861 -0.3359 48 1 -2.8918 -4.8711 -2.0288 49 1 -1.3908 -5.4645 -2.7806 50 1 -5.3498 -4.4591 -5.6153 51 1 0.1679 -3.8244 -3.8990 52 1 -0.2752 -2.1023 -3.9773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829129371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:38 Heat of formation + Delta-G solvation = 62.264437 kcal Electronic energy + Delta-G solvation = -32212.328342 eV Core-core repulsion = 28213.900212 eV Total energy + Delta-G solvation = -3998.428129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.97582 -39.57981 -38.63290 -37.01595 -34.27967 -33.68454 -32.91008 -32.07344 -30.49983 -29.95145 -28.11308 -27.76713 -27.07559 -25.18300 -24.24626 -23.66364 -22.52386 -21.65202 -20.98180 -20.36021 -19.02096 -18.86475 -17.50244 -17.06424 -16.57846 -16.24954 -16.13272 -15.93258 -15.29270 -15.00494 -14.69413 -14.53714 -14.30827 -14.02663 -13.82009 -13.50714 -13.47121 -13.31419 -12.98456 -12.67882 -12.46737 -12.38923 -12.24748 -12.21400 -11.85928 -11.76304 -11.65374 -11.45944 -11.32021 -11.17137 -11.14420 -10.71097 -10.42504 -10.24223 -10.16070 -10.06617 -9.96076 -9.83623 -9.44131 -9.34497 -9.28989 -8.98958 -8.56477 -8.05654 -6.09654 -4.09685 1.60883 1.84944 2.51721 2.92015 3.23057 3.33692 3.36559 3.54460 3.92791 4.10879 4.23539 4.31787 4.37390 4.39972 4.48451 4.63644 4.78867 4.82827 4.90908 4.97768 5.09543 5.17240 5.20589 5.23174 5.26964 5.35803 5.40436 5.42485 5.53030 5.57090 5.58029 5.62429 5.67992 5.71760 5.73557 5.89323 5.94139 6.00803 6.07450 6.16886 6.29692 6.34926 6.48786 6.53018 6.53264 6.55092 6.65539 6.75591 7.00471 7.11803 7.46102 7.52410 7.73432 8.48299 8.89352 8.94982 9.51392 11.03536 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.003019 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.050349 B = 9271.639325 C = 9846.142988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.172 4.172 3 C -0.113 4.113 4 C 0.150 3.850 5 N -0.470 5.470 6 C 0.168 3.832 7 C -0.028 4.028 8 H 0.098 0.902 9 C -0.144 4.144 10 C 0.050 3.950 11 O -0.376 6.376 12 C 0.061 3.939 13 N -0.277 5.277 14 N -0.316 5.316 15 C 0.377 3.623 16 N -0.460 5.460 17 C 0.067 3.933 18 C -0.118 4.118 19 C -0.127 4.127 20 C 0.023 3.977 21 H 0.036 0.964 22 C -0.514 4.514 23 H 0.076 0.924 24 C 0.072 3.928 25 N -0.899 5.899 26 Si 0.887 3.113 27 H -0.279 1.279 28 H -0.264 1.264 29 H -0.298 1.298 30 C 0.094 3.906 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.051 0.949 49 H 0.061 0.939 50 H 0.264 0.736 51 H 0.051 0.949 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.328 9.077 16.593 25.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.173 4.173 3 C -0.169 4.169 4 C 0.028 3.972 5 N -0.165 5.165 6 C -0.099 4.099 7 C -0.049 4.049 8 H 0.116 0.884 9 C -0.183 4.183 10 C -0.027 4.027 11 O -0.295 6.295 12 C -0.017 4.017 13 N -0.117 5.117 14 N -0.160 5.160 15 C 0.021 3.979 16 N -0.184 5.184 17 C -0.060 4.060 18 C -0.156 4.156 19 C -0.164 4.164 20 C 0.003 3.997 21 H 0.054 0.946 22 C -0.552 4.552 23 H 0.094 0.906 24 C -0.130 4.130 25 N -0.537 5.537 26 Si 0.717 3.283 27 H -0.206 1.206 28 H -0.189 1.189 29 H -0.226 1.226 30 C -0.031 4.031 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.446 8.980 15.434 24.965 hybrid contribution -1.087 -0.300 1.606 1.962 sum 16.360 8.680 17.040 25.166 Atomic orbital electron populations 1.24020 0.95023 1.03078 0.94946 1.21662 0.95712 0.94697 1.05218 1.20803 0.99802 0.94309 1.02014 1.20828 1.00716 0.96077 0.79608 1.46286 1.12895 1.44036 1.13235 1.24053 0.88651 1.05715 0.91478 1.20985 0.89593 0.94861 0.99450 0.88409 1.23006 0.96180 0.97165 1.01902 1.23163 0.93290 0.90115 0.96139 1.88878 1.39274 1.29572 1.71763 1.23594 0.83290 0.91542 1.03255 1.73923 1.12528 1.12330 1.12915 1.74776 0.99174 1.21213 1.20834 1.22801 0.91056 0.97539 0.86544 1.58895 1.06444 1.31753 1.21354 1.22152 0.98807 0.89368 0.95685 1.21677 0.93820 1.00653 0.99406 1.22099 0.98742 1.01215 0.94348 1.19204 0.90875 0.93244 0.96352 0.94610 1.20924 0.95264 1.47173 0.91880 0.90603 1.24968 0.97424 0.94611 0.95970 1.69896 1.11565 1.47197 1.24997 0.86849 0.78442 0.78476 0.84497 1.20646 1.18914 1.22561 1.22147 0.94869 1.01452 0.84666 0.87138 0.87919 0.91771 0.91530 0.92111 0.88196 0.88723 0.89174 0.90070 0.91779 0.89663 0.88708 0.90417 0.91950 0.93496 0.91549 0.91847 0.93061 0.91974 0.92603 0.93094 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 13.88 29.01 0.40 -0.99 16 2 C -0.17 -1.65 5.64 -101.07 -0.57 -2.22 16 3 C -0.11 -0.88 10.04 36.00 0.36 -0.52 16 4 C 0.15 1.42 6.14 -5.19 -0.03 1.39 16 5 N -0.47 -6.13 2.79 -115.36 -0.32 -6.45 16 6 C 0.17 2.20 6.64 -154.02 -1.02 1.18 16 7 C -0.03 -0.26 3.51 -89.76 -0.31 -0.57 16 8 H 0.10 0.72 6.92 -51.93 -0.36 0.36 16 9 C -0.14 -1.22 6.59 -25.21 -0.17 -1.39 16 10 C 0.05 0.40 7.70 37.73 0.29 0.69 16 11 O -0.38 -3.82 11.52 -35.23 -0.41 -4.23 16 12 C 0.06 0.58 7.17 38.21 0.27 0.85 16 13 N -0.28 -4.67 11.87 32.99 0.39 -4.28 16 14 N -0.32 -6.02 11.46 30.32 0.35 -5.67 16 15 C 0.38 6.27 6.89 -318.87 -2.20 4.07 16 16 N -0.46 -7.75 4.67 -174.54 -0.82 -8.56 16 17 C 0.07 0.99 5.35 -3.83 -0.02 0.97 16 18 C -0.12 -1.82 6.09 -26.65 -0.16 -1.98 16 19 C -0.13 -2.54 4.73 -26.61 -0.13 -2.67 16 20 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 21 H 0.04 0.83 7.21 -51.93 -0.37 0.46 16 22 C -0.51 -14.12 9.14 -34.44 -0.31 -14.44 16 23 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 24 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 25 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 26 Si 0.89 21.28 24.35 -169.99 -4.14 17.14 16 27 H -0.28 -6.51 6.89 56.52 0.39 -6.12 16 28 H -0.26 -5.98 6.53 56.52 0.37 -5.61 16 29 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 30 C 0.09 1.93 4.11 -3.84 -0.02 1.92 16 31 H 0.11 1.28 7.99 -52.49 -0.42 0.86 16 32 H 0.10 0.98 8.01 -52.48 -0.42 0.56 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.47 8.01 -51.93 -0.42 0.05 16 35 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 36 H 0.10 0.92 6.23 -51.93 -0.32 0.59 16 37 H 0.09 0.65 7.02 -51.93 -0.36 0.28 16 38 H 0.09 0.94 7.72 -51.93 -0.40 0.54 16 39 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.86 7.92 -51.93 -0.41 0.44 16 44 H 0.06 0.75 6.39 -51.93 -0.33 0.42 16 45 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.05 1.10 3.34 -51.93 -0.17 0.92 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.05 1.11 8.10 -51.93 -0.42 0.69 16 52 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 LS Contribution 402.71 15.07 6.07 6.07 Total: -1.00 -32.41 402.71 -10.64 -43.05 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.66 Total: 0.80 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.88 Total: -11.43 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.38 Total: -51.41 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -0.41 Total: -4.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.14 Total: 17.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.41 -10.64 -43.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829129371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.315 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds