Wall clock time and date at job start Wed Apr 1 2020 05:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00124 * 2 1 4 4 C 1.50703 * 119.99605 * 180.02562 * 2 1 3 5 5 N 1.46503 * 109.47118 * 95.53183 * 4 2 1 6 6 C 1.36740 * 127.13784 * 95.51532 * 5 4 2 7 7 C 1.50700 * 126.34395 * 359.96754 * 6 5 4 8 8 H 1.09005 * 110.80606 * 0.98592 * 7 6 5 9 9 C 1.54809 * 110.90790 * 237.35347 * 7 6 5 10 10 C 1.54096 * 104.19219 * 220.92124 * 9 7 6 11 11 O 1.43743 * 107.29025 * 357.97408 * 10 9 7 12 12 C 1.44420 * 107.00412 * 26.48524 * 11 10 9 13 13 N 1.30286 * 107.30786 * 180.23104 * 6 5 4 14 14 N 1.28530 * 110.05592 * 359.77069 * 13 6 5 15 15 C 1.31221 * 109.85891 * 0.02562 * 14 13 6 16 16 N 1.38579 * 126.47517 * 179.97438 * 15 14 13 17 17 C 1.46849 * 110.99721 * 105.22473 * 16 15 14 18 18 C 1.53036 * 109.52374 * 174.16417 * 17 16 15 19 19 C 1.53116 * 109.28138 * 59.17335 * 18 17 16 20 20 C 1.53123 * 109.16229 * 302.35018 * 19 18 17 21 21 H 1.08999 * 109.49762 * 297.67467 * 20 19 18 22 22 C 1.50697 * 109.50046 * 177.59400 * 20 19 18 23 23 H 1.08003 * 119.99509 * 239.99336 * 22 20 19 24 24 C 1.37872 * 120.00358 * 60.00407 * 22 20 19 25 25 N 1.31514 * 119.99997 * 180.02562 * 24 22 20 26 26 Si 1.86802 * 119.99815 * 359.97438 * 24 22 20 27 27 H 1.48507 * 109.46782 * 270.00248 * 26 24 22 28 28 H 1.48496 * 109.46977 * 30.00305 * 26 24 22 29 29 H 1.48501 * 109.47033 * 150.00575 * 26 24 22 30 30 C 1.46845 * 111.00146 * 341.01397 * 16 15 14 31 31 H 1.08002 * 119.99986 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99625 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.46872 * 266.40271 * 3 2 1 34 34 H 1.09000 * 109.46806 * 26.40330 * 3 2 1 35 35 H 1.09003 * 109.46667 * 146.40455 * 3 2 1 36 36 H 1.08999 * 109.47206 * 335.53474 * 4 2 1 37 37 H 1.09004 * 109.47242 * 215.53031 * 4 2 1 38 38 H 1.08994 * 110.48808 * 339.60816 * 9 7 6 39 39 H 1.09008 * 110.48343 * 102.11830 * 9 7 6 40 40 H 1.09002 * 109.87485 * 117.39697 * 10 9 7 41 41 H 1.09002 * 109.87969 * 238.55131 * 10 9 7 42 42 H 1.09001 * 110.65285 * 201.47857 * 12 11 10 43 43 H 1.08998 * 110.60041 * 78.46910 * 12 11 10 44 44 H 1.09000 * 109.46620 * 54.14444 * 17 16 15 45 45 H 1.09010 * 109.45153 * 294.17012 * 17 16 15 46 46 H 1.08997 * 109.49905 * 299.23422 * 18 17 16 47 47 H 1.08997 * 109.53799 * 179.13908 * 18 17 16 48 48 H 1.09001 * 109.52442 * 182.44022 * 19 18 17 49 49 H 1.09002 * 109.57139 * 62.28438 * 19 18 17 50 50 H 0.97005 * 119.99743 * 180.02562 * 25 24 22 51 51 H 1.09006 * 109.46185 * 65.82260 * 30 16 15 52 52 H 1.09001 * 109.45899 * 305.85404 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4229 -1.6609 -1.3756 6 6 3.6073 -1.4088 -2.0108 7 6 4.8032 -0.7042 -1.4239 8 1 4.6160 -0.4213 -0.3880 9 6 5.1880 0.5316 -2.2732 10 6 6.7280 0.4965 -2.3151 11 8 7.1516 -0.6235 -1.5198 12 6 6.0738 -1.5847 -1.5360 13 7 3.5081 -1.8855 -3.2192 14 7 2.3523 -2.4219 -3.3880 15 6 1.6461 -2.3147 -2.2873 16 7 0.3538 -2.7743 -2.0896 17 6 0.3472 -3.9846 -1.2579 18 6 -1.0969 -4.3792 -0.9404 19 6 -1.8513 -4.6320 -2.2486 20 6 -1.7880 -3.3723 -3.1169 21 1 -2.2845 -2.5501 -2.6017 22 6 -2.4776 -3.6322 -4.4314 23 1 -1.9277 -3.5424 -5.3566 24 6 -3.8104 -3.9844 -4.4530 25 7 -4.4119 -4.2117 -5.6001 26 14 -4.7613 -4.1401 -2.8526 27 1 -4.6573 -5.5331 -2.3486 28 1 -4.1941 -3.2061 -1.8470 29 1 -6.1883 -3.8049 -3.0902 30 6 -0.3238 -3.0071 -3.3713 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5400 0.9354 0.0004 33 1 2.3010 1.5874 -1.0256 34 1 1.4481 2.0799 0.4570 35 1 2.9866 1.1916 0.5687 36 1 1.4350 -2.0877 0.4247 37 1 2.9694 -1.2020 0.5967 38 1 4.7769 0.4463 -3.2790 39 1 4.8383 1.4468 -1.7953 40 1 7.0680 0.3708 -3.3431 41 1 7.1313 1.4199 -1.8994 42 1 6.1488 -2.2607 -0.6842 43 1 6.0723 -2.1434 -2.4718 44 1 0.8832 -3.7900 -0.3290 45 1 0.8358 -4.7973 -1.7957 46 1 -1.5819 -3.5725 -0.3907 47 1 -1.1025 -5.2861 -0.3359 48 1 -2.8918 -4.8711 -2.0288 49 1 -1.3908 -5.4645 -2.7806 50 1 -5.3498 -4.4591 -5.6153 51 1 0.1679 -3.8244 -3.8990 52 1 -0.2752 -2.1023 -3.9773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829129371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:36 Heat of formation + Delta-G solvation = 42.899308 kcal Electronic energy + Delta-G solvation = -32213.168077 eV Core-core repulsion = 28213.900212 eV Total energy + Delta-G solvation = -3999.267864 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.13310 -40.42218 -39.98183 -37.84943 -35.87727 -34.62584 -34.28692 -33.43707 -32.20073 -30.75436 -29.20998 -28.44718 -27.89502 -27.09142 -25.67524 -24.58468 -23.34634 -23.04853 -22.28837 -21.37431 -20.44370 -19.79245 -19.00785 -18.30802 -17.76679 -17.21943 -17.15869 -17.01932 -16.43063 -16.00162 -15.87352 -15.71835 -15.54577 -15.26541 -14.90812 -14.77010 -14.70704 -14.29008 -14.20609 -14.03872 -13.90920 -13.23696 -13.12507 -12.97021 -12.93379 -12.77606 -12.65398 -12.54701 -12.44004 -12.41780 -12.36996 -12.04503 -11.95700 -11.81563 -11.63911 -11.39608 -11.17099 -11.06812 -10.95184 -10.71212 -10.66553 -10.54565 -10.16662 -9.38826 -8.30120 -6.36132 0.60555 0.87108 1.31471 1.38223 1.49564 1.55167 1.72390 2.33431 2.63871 2.86034 3.04960 3.30619 3.49215 3.59750 3.67814 3.70408 3.76362 3.90918 3.95331 4.00865 4.09757 4.18743 4.23556 4.25598 4.30528 4.36186 4.45251 4.49651 4.62747 4.65858 4.69514 4.72503 4.77529 4.83331 4.86687 4.87390 4.89345 4.92864 4.95623 4.98867 5.06216 5.10584 5.12408 5.13853 5.36004 5.50177 5.58286 5.63453 5.64979 5.80286 5.81508 5.81809 6.20592 6.28972 6.70547 7.29086 7.70314 8.87248 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.003019 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.050349 B = 9271.639325 C = 9846.142988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.169 4.169 3 C -0.113 4.113 4 C 0.139 3.861 5 N -0.459 5.459 6 C 0.194 3.806 7 C -0.025 4.025 8 H 0.133 0.867 9 C -0.140 4.140 10 C 0.048 3.952 11 O -0.387 6.387 12 C 0.062 3.938 13 N -0.319 5.319 14 N -0.366 5.366 15 C 0.363 3.637 16 N -0.449 5.449 17 C 0.065 3.935 18 C -0.108 4.108 19 C -0.127 4.127 20 C 0.029 3.971 21 H 0.036 0.964 22 C -0.525 4.525 23 H 0.024 0.976 24 C 0.011 3.989 25 N -0.952 5.952 26 Si 0.956 3.044 27 H -0.262 1.262 28 H -0.237 1.237 29 H -0.302 1.302 30 C 0.114 3.886 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.053 0.947 44 H 0.103 0.897 45 H 0.035 0.965 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.045 0.955 49 H 0.049 0.951 50 H 0.266 0.734 51 H 0.025 0.975 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.705 10.099 21.965 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.170 4.170 3 C -0.169 4.169 4 C 0.019 3.981 5 N -0.153 5.153 6 C -0.074 4.074 7 C -0.046 4.046 8 H 0.151 0.849 9 C -0.179 4.179 10 C -0.028 4.028 11 O -0.306 6.306 12 C -0.016 4.016 13 N -0.158 5.158 14 N -0.210 5.210 15 C 0.006 3.994 16 N -0.173 5.173 17 C -0.061 4.061 18 C -0.145 4.145 19 C -0.164 4.164 20 C 0.009 3.991 21 H 0.054 0.946 22 C -0.563 4.563 23 H 0.042 0.958 24 C -0.186 4.186 25 N -0.592 5.592 26 Si 0.782 3.218 27 H -0.188 1.188 28 H -0.160 1.160 29 H -0.230 1.230 30 C -0.013 4.013 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.053 0.947 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.044 0.956 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.865 10.012 20.835 29.836 hybrid contribution -1.377 -0.546 -0.189 1.493 sum 17.488 9.467 20.646 28.665 Atomic orbital electron populations 1.24073 0.95662 1.02862 0.96148 1.21859 0.95556 0.95566 1.03987 1.20846 1.00920 0.93451 1.01698 1.21282 1.02829 0.96266 0.77757 1.46432 1.11944 1.42895 1.14015 1.24742 0.89266 1.03133 0.90306 1.21253 0.87655 0.94615 1.01053 0.84906 1.22992 0.96440 0.97875 1.00610 1.23286 0.92947 0.90566 0.96026 1.88876 1.39651 1.30093 1.71941 1.23569 0.83305 0.91682 1.02998 1.73842 1.12175 1.14342 1.15418 1.74667 1.00548 1.22938 1.22883 1.22684 0.91051 0.98454 0.87238 1.58836 1.06730 1.32787 1.18953 1.22310 0.99099 0.88099 0.96636 1.21644 0.93087 1.02922 0.96868 1.21975 0.99170 0.98865 0.96405 1.19046 0.91191 0.94703 0.94136 0.94609 1.21230 0.95684 1.46808 0.92597 0.95777 1.25934 0.98476 0.94051 1.00096 1.70072 1.12103 1.49019 1.28020 0.85734 0.76184 0.79899 0.79975 1.18767 1.15995 1.22981 1.21618 0.94282 0.99016 0.86357 0.88256 0.87505 0.93034 0.90794 0.89541 0.87324 0.84891 0.91804 0.87570 0.92407 0.87129 0.86681 0.92823 0.87910 0.94691 0.90092 0.88269 0.93644 0.93258 0.92484 0.95616 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 13.88 67.78 0.94 -1.83 16 2 C -0.17 -2.65 5.64 -16.49 -0.09 -2.74 16 3 C -0.11 -1.31 10.04 71.24 0.72 -0.60 16 4 C 0.14 2.03 6.14 85.63 0.53 2.56 16 5 N -0.46 -10.89 2.79 -518.89 -1.45 -12.34 16 6 C 0.19 4.76 6.64 137.64 0.91 5.67 16 7 C -0.02 -0.38 3.51 -10.24 -0.04 -0.42 16 8 H 0.13 1.17 6.92 -2.38 -0.02 1.16 16 9 C -0.14 -2.05 6.59 31.58 0.21 -1.85 16 10 C 0.05 0.66 7.70 72.35 0.56 1.22 16 11 O -0.39 -6.86 11.52 -148.98 -1.72 -8.57 16 12 C 0.06 1.04 7.17 72.67 0.52 1.56 16 13 N -0.32 -10.96 11.87 -49.54 -0.59 -11.55 16 14 N -0.37 -14.50 11.46 -58.00 -0.66 -15.17 16 15 C 0.36 11.98 6.89 260.11 1.79 13.77 16 16 N -0.45 -14.87 4.67 -706.13 -3.30 -18.17 16 17 C 0.06 1.75 5.35 86.33 0.46 2.21 16 18 C -0.11 -2.92 6.09 30.64 0.19 -2.74 16 19 C -0.13 -4.93 4.73 30.67 0.15 -4.79 16 20 C 0.03 1.31 1.85 -11.49 -0.02 1.29 16 21 H 0.04 1.65 7.21 -2.39 -0.02 1.63 16 22 C -0.52 -30.55 9.14 25.60 0.23 -30.31 16 23 H 0.02 1.59 7.99 -2.91 -0.02 1.57 16 24 C 0.01 0.66 5.45 84.65 0.46 1.12 16 25 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 26 Si 0.96 43.87 24.35 68.60 1.67 45.54 16 27 H -0.26 -11.24 6.89 99.48 0.69 -10.56 16 28 H -0.24 -9.73 6.53 99.48 0.65 -9.08 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 30 C 0.11 4.94 4.11 86.32 0.35 5.30 16 31 H 0.10 2.06 7.99 -2.91 -0.02 2.04 16 32 H 0.11 1.83 8.01 -2.91 -0.02 1.81 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.77 8.01 -2.39 -0.02 0.75 16 35 H 0.09 0.57 8.13 -2.39 -0.02 0.55 16 36 H 0.11 1.45 6.23 -2.39 -0.01 1.44 16 37 H 0.13 0.97 7.02 -2.38 -0.02 0.96 16 38 H 0.06 1.30 7.72 -2.39 -0.02 1.28 16 39 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.16 7.92 -2.39 -0.02 1.14 16 44 H 0.10 2.00 6.39 -2.39 -0.02 1.99 16 45 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.05 1.82 3.34 -2.39 -0.01 1.82 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 51 H 0.03 1.21 8.10 -2.38 -0.02 1.19 16 52 H 0.05 2.26 8.10 -2.39 -0.02 2.24 16 Total: -1.00 -78.22 402.71 2.95 -75.27 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.82 Total: 15.74 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 7.87 Total: -10.57 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -5.70 Total: -117.41 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -1.72 Total: -8.57 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.54 kcal Total: -78.22 2.95 -75.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829129371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.173 kcal (2) G-P(sol) polarization free energy of solvation -78.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds