Wall clock time and date at job start Wed Apr 1 2020 05:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50699 * 119.99867 * 2 1 4 4 C 1.50700 * 119.99708 * 180.02562 * 2 1 3 5 5 N 1.46500 * 109.46769 * 110.43293 * 4 2 1 6 6 C 1.36745 * 127.14114 * 82.45354 * 5 4 2 7 7 C 1.50696 * 126.34496 * 359.94159 * 6 5 4 8 8 H 1.09001 * 110.80720 * 3.63088 * 7 6 5 9 9 C 1.54812 * 110.90735 * 239.99768 * 7 6 5 10 10 C 1.54096 * 104.18598 * 220.91979 * 9 7 6 11 11 O 1.43739 * 107.29908 * 357.97478 * 10 9 7 12 12 C 1.44382 * 106.97561 * 26.51007 * 11 10 9 13 13 N 1.30290 * 107.30527 * 179.97438 * 6 5 4 14 14 N 1.28532 * 110.05415 * 359.72690 * 13 6 5 15 15 C 1.31212 * 109.86085 * 0.45446 * 14 13 6 16 16 N 1.38577 * 126.47218 * 179.82381 * 15 14 13 17 17 C 1.46849 * 111.00235 * 118.69676 * 16 15 14 18 18 C 1.53038 * 109.52445 * 185.83971 * 17 16 15 19 19 C 1.53119 * 109.27279 * 300.81758 * 18 17 16 20 20 C 1.53111 * 109.16444 * 57.65823 * 19 18 17 21 21 H 1.08999 * 109.51028 * 62.32343 * 20 19 18 22 22 C 1.50706 * 109.50381 * 182.40627 * 20 19 18 23 23 H 1.07993 * 120.00488 * 114.36364 * 22 20 19 24 24 C 1.37883 * 119.99315 * 294.35923 * 22 20 19 25 25 N 1.31507 * 120.00134 * 1.08483 * 24 22 20 26 26 Si 1.86804 * 119.99275 * 181.08465 * 24 22 20 27 27 H 1.48497 * 109.47110 * 265.00454 * 26 24 22 28 28 H 1.48502 * 109.46870 * 145.01093 * 26 24 22 29 29 H 1.48497 * 109.47386 * 25.01156 * 26 24 22 30 30 C 1.46849 * 110.99862 * 242.90024 * 16 15 14 31 31 H 1.08002 * 120.00281 * 185.98073 * 1 2 3 32 32 H 1.08006 * 120.00051 * 5.98230 * 1 2 3 33 33 H 1.08999 * 109.47259 * 273.08884 * 3 2 1 34 34 H 1.08998 * 109.47406 * 33.09161 * 3 2 1 35 35 H 1.09002 * 109.47144 * 153.09174 * 3 2 1 36 36 H 1.08992 * 109.47202 * 350.42894 * 4 2 1 37 37 H 1.08998 * 109.46741 * 230.42534 * 4 2 1 38 38 H 1.09000 * 110.48710 * 339.60011 * 9 7 6 39 39 H 1.09001 * 110.48103 * 102.24632 * 9 7 6 40 40 H 1.09004 * 109.87842 * 117.39702 * 10 9 7 41 41 H 1.08995 * 109.87943 * 238.39478 * 10 9 7 42 42 H 1.08998 * 110.61736 * 201.44564 * 12 11 10 43 43 H 1.08994 * 110.61853 * 78.44377 * 12 11 10 44 44 H 1.08993 * 109.46585 * 65.81729 * 17 16 15 45 45 H 1.09004 * 109.44690 * 305.84794 * 17 16 15 46 46 H 1.09000 * 109.50258 * 180.87693 * 18 17 16 47 47 H 1.09001 * 109.53782 * 60.77430 * 18 17 16 48 48 H 1.09004 * 109.52183 * 297.74356 * 19 18 17 49 49 H 1.09011 * 109.56959 * 177.59196 * 19 18 17 50 50 H 0.96998 * 119.99516 * 179.97438 * 25 24 22 51 51 H 1.09002 * 109.45785 * 54.14658 * 30 16 15 52 52 H 1.08999 * 109.46501 * 294.17759 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.7252 -1.4863 -1.2950 6 6 3.9220 -0.9571 -1.6917 7 6 4.8200 -0.0663 -0.8725 8 1 4.4222 0.0642 0.1339 9 6 5.0242 1.3018 -1.5677 10 6 6.5186 1.6133 -1.3567 11 8 7.0720 0.5423 -0.5739 12 6 6.2644 -0.6271 -0.8286 13 7 4.1417 -1.3652 -2.9094 14 7 3.1753 -2.1151 -3.3040 15 6 2.2753 -2.2187 -2.3548 16 7 1.0939 -2.9405 -2.4151 17 6 1.0671 -3.9927 -1.3911 18 6 -0.1805 -4.8586 -1.5800 19 6 -1.4284 -3.9786 -1.4670 20 6 -1.3526 -2.8623 -2.5122 21 1 -1.3444 -3.2988 -3.5109 22 6 -2.5485 -1.9566 -2.3687 23 1 -2.4148 -0.9304 -2.0599 24 6 -3.8134 -2.4382 -2.6318 25 7 -3.9783 -3.6935 -2.9873 26 14 -5.2928 -1.3073 -2.4834 27 1 -5.8995 -1.4602 -1.1366 28 1 -6.2941 -1.6634 -3.5206 29 1 -4.8610 0.1005 -2.6749 30 6 -0.0710 -2.0543 -2.2963 31 1 -0.5401 -0.9302 0.0975 32 1 -0.5400 0.9303 -0.0975 33 1 2.1972 1.6475 -1.0261 34 1 1.4996 2.0503 0.5611 35 1 3.0388 1.1616 0.4651 36 1 1.3675 -2.1265 0.1699 37 1 2.8121 -1.2928 0.7915 38 1 4.7965 1.2271 -2.6310 39 1 4.4051 2.0652 -1.0966 40 1 7.0254 1.6683 -2.3202 41 1 6.6287 2.5588 -0.8257 42 1 6.3709 -1.3505 -0.0204 43 1 6.5309 -1.0766 -1.7851 44 1 1.0459 -3.5361 -0.4016 45 1 1.9579 -4.6137 -1.4854 46 1 -0.2081 -5.6299 -0.8102 47 1 -0.1535 -5.3272 -2.5638 48 1 -1.4766 -3.5413 -0.4696 49 1 -2.3185 -4.5828 -1.6432 50 1 -4.8682 -4.0323 -3.1720 51 1 -0.0067 -1.2674 -3.0479 52 1 -0.0869 -1.6067 -1.3025 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829129439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:42 Heat of formation + Delta-G solvation = 65.456392 kcal Electronic energy + Delta-G solvation = -32761.729430 eV Core-core repulsion = 28763.439715 eV Total energy + Delta-G solvation = -3998.289716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.96627 -39.55991 -38.69068 -36.84576 -34.21340 -33.55447 -32.90950 -31.78486 -30.20258 -29.87498 -28.21766 -27.83337 -26.94919 -25.14024 -23.84208 -23.54853 -22.48838 -21.75333 -20.96612 -20.37067 -19.09105 -18.84098 -17.40475 -16.98135 -16.43626 -16.12116 -15.95780 -15.64854 -15.23546 -15.19988 -14.81610 -14.50942 -14.03316 -13.88401 -13.64600 -13.45070 -13.42644 -13.00454 -12.75663 -12.70185 -12.44427 -12.26171 -12.08045 -11.95946 -11.79461 -11.70859 -11.52036 -11.36082 -11.16187 -11.05197 -10.94217 -10.85300 -10.34052 -10.27311 -10.09048 -10.04511 -9.91167 -9.71919 -9.37383 -9.24925 -8.97353 -8.70862 -8.47643 -8.22447 -6.10961 -4.16981 1.65512 1.91591 2.65805 2.98252 3.21898 3.30746 3.32364 3.57598 3.78131 4.15389 4.24034 4.35178 4.36969 4.45098 4.51481 4.66916 4.83361 4.87321 4.92095 5.03087 5.19385 5.22342 5.27895 5.32827 5.41631 5.43568 5.46241 5.54276 5.60801 5.61399 5.70844 5.73428 5.75190 5.84604 5.86092 5.98472 6.09122 6.16930 6.24711 6.39509 6.42397 6.46606 6.52296 6.54977 6.62881 6.75004 6.91033 7.14257 7.25906 7.59378 7.61415 7.87314 7.96053 8.28352 8.86806 8.97978 9.48189 10.96768 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016872 B = 0.003255 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.198741 B = 8599.370679 C = 9417.422703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.179 4.179 3 C -0.116 4.116 4 C 0.133 3.867 5 N -0.489 5.489 6 C 0.175 3.825 7 C -0.033 4.033 8 H 0.100 0.900 9 C -0.146 4.146 10 C 0.050 3.950 11 O -0.376 6.376 12 C 0.061 3.939 13 N -0.286 5.286 14 N -0.274 5.274 15 C 0.368 3.632 16 N -0.444 5.444 17 C 0.061 3.939 18 C -0.118 4.118 19 C -0.110 4.110 20 C 0.057 3.943 21 H 0.042 0.958 22 C -0.517 4.517 23 H 0.054 0.946 24 C 0.067 3.933 25 N -0.884 5.884 26 Si 0.889 3.111 27 H -0.282 1.282 28 H -0.285 1.285 29 H -0.274 1.274 30 C 0.053 3.947 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.033 0.967 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.032 0.968 49 H 0.089 0.911 50 H 0.261 0.739 51 H 0.064 0.936 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.878 7.270 10.098 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.180 4.180 3 C -0.172 4.172 4 C 0.010 3.990 5 N -0.186 5.186 6 C -0.093 4.093 7 C -0.054 4.054 8 H 0.118 0.882 9 C -0.185 4.185 10 C -0.027 4.027 11 O -0.295 6.295 12 C -0.017 4.017 13 N -0.126 5.126 14 N -0.114 5.114 15 C 0.013 3.987 16 N -0.168 5.168 17 C -0.066 4.066 18 C -0.156 4.156 19 C -0.148 4.148 20 C 0.038 3.962 21 H 0.061 0.939 22 C -0.556 4.556 23 H 0.073 0.927 24 C -0.136 4.136 25 N -0.522 5.522 26 Si 0.717 3.283 27 H -0.208 1.208 28 H -0.211 1.211 29 H -0.199 1.199 30 C -0.073 4.073 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.051 0.949 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.051 0.949 49 H 0.107 0.893 50 H 0.071 0.929 51 H 0.083 0.917 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.555 6.691 8.357 18.884 hybrid contribution -1.910 1.064 1.820 2.844 sum 13.645 7.755 10.177 18.706 Atomic orbital electron populations 1.24154 0.94824 1.03641 0.94609 1.21665 0.95625 0.94811 1.05903 1.20931 0.99780 0.94345 1.02171 1.21129 0.97427 0.97579 0.82820 1.47689 1.17746 1.38506 1.14633 1.24024 0.88168 1.02132 0.94967 1.21099 0.93903 0.92842 0.97531 0.88184 1.23069 0.97123 0.95372 1.02886 1.23155 0.92185 0.91217 0.96153 1.88870 1.53580 1.19587 1.67423 1.23587 0.86578 0.88750 1.02760 1.74068 1.19753 1.11072 1.07751 1.74544 0.99180 1.15666 1.22054 1.23590 0.95316 0.95160 0.84628 1.59308 0.97693 1.11532 1.48238 1.22316 1.00504 0.92748 0.91045 1.21713 0.94462 0.97505 1.01874 1.21691 0.96399 0.98248 0.98439 1.18700 0.88595 0.92496 0.96411 0.93938 1.21002 0.90868 0.96937 1.46756 0.92740 1.24913 0.98814 0.94999 0.94834 1.69905 1.22581 1.13726 1.46017 0.86624 0.82756 0.81123 0.77765 1.20786 1.21127 1.19914 1.23018 0.88893 0.94849 1.00500 0.86489 0.87311 0.91671 0.91363 0.91860 0.87515 0.88704 0.89252 0.89890 0.91848 0.89673 0.88729 0.90343 0.94936 0.91382 0.92531 0.91181 0.94933 0.89288 0.92869 0.91741 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 12.08 29.01 0.35 -1.33 16 2 C -0.18 -2.03 5.50 -101.07 -0.56 -2.59 16 3 C -0.12 -1.08 8.59 36.00 0.31 -0.77 16 4 C 0.13 1.53 5.14 -5.19 -0.03 1.51 16 5 N -0.49 -7.01 2.79 -115.37 -0.32 -7.33 16 6 C 0.17 2.42 6.53 -154.02 -1.01 1.42 16 7 C -0.03 -0.33 2.61 -89.76 -0.23 -0.56 16 8 H 0.10 0.85 5.27 -51.93 -0.27 0.58 16 9 C -0.15 -1.32 6.40 -25.20 -0.16 -1.48 16 10 C 0.05 0.42 7.70 37.73 0.29 0.71 16 11 O -0.38 -3.98 11.52 -35.23 -0.41 -4.39 16 12 C 0.06 0.61 7.16 38.22 0.27 0.89 16 13 N -0.29 -4.93 11.87 32.99 0.39 -4.54 16 14 N -0.27 -5.39 12.23 30.31 0.37 -5.02 16 15 C 0.37 6.59 6.63 -318.88 -2.11 4.48 16 16 N -0.44 -8.28 4.70 -174.55 -0.82 -9.10 16 17 C 0.06 0.99 5.17 -3.83 -0.02 0.97 16 18 C -0.12 -2.06 6.09 -26.65 -0.16 -2.22 16 19 C -0.11 -2.30 5.09 -26.61 -0.14 -2.44 16 20 C 0.06 1.31 2.17 -91.69 -0.20 1.12 16 21 H 0.04 1.14 8.14 -51.93 -0.42 0.71 16 22 C -0.52 -13.03 8.49 -34.44 -0.29 -13.32 16 23 H 0.05 1.34 7.75 -52.49 -0.41 0.94 16 24 C 0.07 1.74 5.34 -17.82 -0.10 1.64 16 25 N -0.88 -23.98 11.73 55.43 0.65 -23.33 16 26 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 30 C 0.05 1.04 4.44 -3.83 -0.02 1.03 16 31 H 0.12 1.64 6.35 -52.49 -0.33 1.31 16 32 H 0.11 1.28 8.05 -52.48 -0.42 0.86 16 33 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 34 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.06 0.49 5.33 -51.93 -0.28 0.22 16 36 H 0.11 1.30 4.12 -51.93 -0.21 1.09 16 37 H 0.09 0.84 7.56 -51.93 -0.39 0.45 16 38 H 0.09 0.96 7.79 -51.93 -0.40 0.56 16 39 H 0.08 0.62 6.74 -51.93 -0.35 0.27 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 44 H 0.03 0.48 5.15 -51.93 -0.27 0.21 16 45 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 2.13 6.55 -51.92 -0.34 1.79 16 50 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 51 H 0.06 1.41 8.10 -51.93 -0.42 0.99 16 52 H 0.05 0.87 2.13 -51.93 -0.11 0.76 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -29.52 388.83 -11.05 -40.57 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.96 Total: 3.10 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -3.80 Total: -10.96 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.27 Total: -49.33 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.41 Total: -4.39 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.52 -11.05 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829129439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.031 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds