Wall clock time and date at job start Wed Apr 1 2020 04:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47206 * 2 1 4 4 C 1.53004 * 109.46823 * 120.00068 * 2 1 3 5 5 N 1.46897 * 109.47035 * 177.17029 * 4 2 1 6 6 C 1.46842 * 111.00154 * 183.86099 * 5 4 2 7 7 C 1.53038 * 109.52428 * 185.84160 * 6 5 4 8 8 C 1.53119 * 109.27610 * 300.81810 * 7 6 5 9 9 N 1.46500 * 109.52293 * 177.56367 * 8 7 6 10 10 C 1.34775 * 120.00108 * 154.99879 * 9 8 7 11 11 O 1.21579 * 120.00095 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99796 * 179.97438 * 10 9 8 13 13 C 1.39460 * 119.99908 * 184.53385 * 12 10 9 14 14 C 1.38647 * 119.64882 * 185.31739 * 13 12 10 15 15 C 1.40817 * 118.67504 * 179.72789 * 14 13 12 16 16 C 1.41544 * 121.00037 * 180.25625 * 15 14 13 17 17 H 1.08005 * 120.00213 * 149.67326 * 16 15 14 18 18 C 1.40034 * 119.99730 * 329.67816 * 16 15 14 19 19 N 1.30743 * 119.99788 * 168.05800 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 348.05692 * 18 16 15 21 21 H 1.48503 * 109.47119 * 88.39087 * 20 18 16 22 22 H 1.48500 * 109.47052 * 208.38804 * 20 18 16 23 23 H 1.48497 * 109.47183 * 328.38735 * 20 18 16 24 24 C 1.41171 * 118.00483 * 0.27573 * 15 14 13 25 25 C 1.36595 * 119.12710 * 359.97438 * 24 15 14 26 26 N 1.32062 * 121.25769 * 0.02562 * 25 24 15 27 27 C 1.53118 * 109.16506 * 57.65437 * 8 7 6 28 28 C 1.46847 * 111.00061 * 308.06722 * 5 4 2 29 29 H 1.08999 * 109.47446 * 184.76396 * 1 2 3 30 30 H 1.09004 * 109.47465 * 304.76503 * 1 2 3 31 31 H 1.09001 * 109.47362 * 64.76444 * 1 2 3 32 32 H 1.09003 * 109.47046 * 239.99873 * 2 1 3 33 33 H 1.09004 * 109.47205 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47553 * 300.00065 * 3 2 1 35 35 H 1.09003 * 109.47222 * 59.99981 * 3 2 1 36 36 H 1.09001 * 109.46944 * 57.17201 * 4 2 1 37 37 H 1.09000 * 109.47081 * 297.17386 * 4 2 1 38 38 H 1.08998 * 109.46410 * 65.82209 * 6 5 4 39 39 H 1.09001 * 109.45276 * 305.84400 * 6 5 4 40 40 H 1.09003 * 109.50164 * 180.87605 * 7 6 5 41 41 H 1.08997 * 109.50358 * 60.75852 * 7 6 5 42 42 H 1.09007 * 109.52086 * 297.68386 * 8 7 6 43 43 H 0.97005 * 119.99657 * 334.99219 * 9 8 7 44 44 H 0.96997 * 120.00336 * 4.54224 * 12 10 9 45 45 H 1.07997 * 120.66044 * 0.02562 * 14 13 12 46 46 H 0.97000 * 119.99659 * 180.02562 * 19 18 16 47 47 H 1.08001 * 120.43729 * 179.97438 * 24 15 14 48 48 H 1.08000 * 119.36781 * 179.97438 * 25 24 15 49 49 H 1.08999 * 109.49899 * 62.28666 * 27 8 7 50 50 H 1.08991 * 109.50344 * 182.40448 * 27 8 7 51 51 H 1.08996 * 109.46515 * 294.17806 * 28 5 4 52 52 H 1.09004 * 109.46387 * 54.15319 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5073 -0.7808 1.2156 6 6 4.0292 -1.5471 2.3544 7 6 5.5573 -1.4657 2.3683 8 6 6.1056 -2.0305 1.0550 9 7 7.5649 -1.9019 1.0381 10 6 8.3060 -2.7347 0.2807 11 8 7.7636 -3.5929 -0.3882 12 7 9.6485 -2.6160 0.2648 13 6 10.4089 -3.4139 -0.5896 14 6 11.7929 -3.3659 -0.5221 15 6 12.5406 -4.1844 -1.3905 16 6 13.9557 -4.1785 -1.3598 17 1 14.5051 -5.0718 -1.6181 18 6 14.6432 -3.0146 -0.9946 19 7 15.9244 -3.0652 -0.7389 20 14 13.7299 -1.3897 -0.8727 21 1 13.1755 -1.2350 0.4963 22 1 14.6666 -0.2729 -1.1565 23 1 12.6216 -1.3694 -1.8609 24 6 11.8364 -5.0107 -2.2929 25 6 10.4706 -4.9861 -2.2897 26 7 9.8012 -4.2057 -1.4610 27 6 5.5092 -1.2463 -0.1172 28 6 3.9825 -1.3340 -0.0590 29 1 -0.3634 -1.0241 0.0853 30 1 -0.3634 0.5860 0.8442 31 1 -0.3634 0.4381 -0.9296 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6357 -1.7333 1.2749 37 1 1.7185 -0.1790 2.1385 38 1 3.7218 -2.5888 2.2627 39 1 3.6350 -1.1323 3.2822 40 1 5.9451 -2.0474 3.2047 41 1 5.8654 -0.4255 2.4739 42 1 5.8316 -3.0819 0.9681 43 1 7.9976 -1.2173 1.5720 44 1 10.0858 -1.9759 0.8478 45 1 12.2876 -2.7173 0.1856 46 1 16.4006 -2.2590 -0.4855 47 1 12.3704 -5.6538 -2.9767 48 1 9.9280 -5.6164 -2.9787 49 1 5.8166 -0.2027 -0.0507 50 1 5.8626 -1.6713 -1.0566 51 1 3.6753 -2.3767 -0.1394 52 1 3.5545 -0.7647 -0.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871720315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:05 Heat of formation + Delta-G solvation = 4.810767 kcal Electronic energy + Delta-G solvation = -30277.252528 eV Core-core repulsion = 26276.333021 eV Total energy + Delta-G solvation = -4000.919507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.29642 -39.43074 -38.24757 -36.42939 -34.45794 -34.05421 -33.76425 -31.35048 -31.15510 -31.02818 -28.73050 -27.42332 -26.19736 -25.89929 -23.61314 -23.26764 -22.36503 -21.57924 -20.45796 -20.04321 -19.75120 -18.20755 -17.73588 -16.85223 -16.16966 -15.68410 -15.54682 -15.30604 -15.07406 -14.97381 -14.64573 -14.47021 -14.19246 -13.93506 -13.76163 -13.68323 -13.21555 -13.10676 -12.93474 -12.79863 -12.68742 -12.62506 -12.42885 -12.18494 -11.62742 -11.58196 -11.44775 -11.29173 -11.22502 -11.03546 -10.95901 -10.84528 -10.70958 -10.62885 -10.52294 -10.04490 -9.88791 -9.66596 -9.35792 -8.87459 -8.57864 -8.21186 -7.87607 -7.24124 -7.04067 -4.73471 2.41224 2.63524 2.87144 2.99747 3.12513 3.23967 3.57364 3.71660 3.87824 4.33167 4.39269 4.52923 4.59356 4.60605 4.73292 4.81662 4.85897 5.01791 5.12824 5.19478 5.23951 5.31254 5.35680 5.37427 5.41948 5.45002 5.46252 5.57431 5.59242 5.66202 5.71184 5.73631 5.79316 5.85994 5.98933 6.00466 6.11444 6.18467 6.27701 6.37128 6.41788 6.57394 6.66491 6.79626 6.82351 6.94404 7.06913 7.21487 7.30656 7.65653 7.95605 8.21171 8.23574 8.45096 8.65991 9.01889 9.49249 9.97472 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.002036 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.771505 B =13747.630187 C =14134.607983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.139 4.139 4 C 0.060 3.940 5 N -0.536 5.536 6 C 0.061 3.939 7 C -0.123 4.123 8 C 0.167 3.833 9 N -0.749 5.749 10 C 0.694 3.306 11 O -0.529 6.529 12 N -0.673 5.673 13 C 0.388 3.612 14 C -0.328 4.328 15 C 0.130 3.870 16 C -0.437 4.437 17 H 0.095 0.905 18 C 0.084 3.916 19 N -0.805 5.805 20 Si 0.923 3.077 21 H -0.271 1.271 22 H -0.293 1.293 23 H -0.247 1.247 24 C -0.272 4.272 25 C 0.130 3.870 26 N -0.553 5.553 27 C -0.127 4.127 28 C 0.053 3.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.403 0.597 45 H 0.110 0.890 46 H 0.287 0.713 47 H 0.110 0.890 48 H 0.129 0.871 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.035 0.965 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.683 9.630 6.796 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.196 4.196 4 C -0.067 4.067 5 N -0.261 5.261 6 C -0.068 4.068 7 C -0.161 4.161 8 C 0.061 3.939 9 N -0.406 5.406 10 C 0.393 3.607 11 O -0.400 6.400 12 N -0.321 5.321 13 C 0.160 3.840 14 C -0.354 4.354 15 C 0.121 3.879 16 C -0.468 4.468 17 H 0.113 0.887 18 C -0.136 4.136 19 N -0.429 5.429 20 Si 0.751 3.249 21 H -0.197 1.197 22 H -0.221 1.221 23 H -0.171 1.171 24 C -0.295 4.295 25 C -0.022 4.022 26 N -0.273 5.273 27 C -0.166 4.166 28 C -0.075 4.075 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.224 0.776 44 H 0.238 0.762 45 H 0.128 0.872 46 H 0.098 0.902 47 H 0.128 0.872 48 H 0.146 0.854 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.053 0.947 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.721 9.354 6.230 27.156 hybrid contribution 0.965 0.585 0.706 1.331 sum -23.756 9.939 6.936 26.669 Atomic orbital electron populations 1.21820 0.95106 1.01629 1.01909 1.21268 0.95365 0.97399 0.97983 1.21732 1.02218 0.94766 1.00894 1.22170 0.87090 0.98702 0.98762 1.61998 1.08616 1.52905 1.02587 1.21988 0.94582 0.96019 0.94165 1.21860 0.94937 1.02265 0.97041 1.20756 0.78248 1.00507 0.94374 1.45276 1.06593 1.37689 1.50999 1.16062 0.81353 0.82308 0.80958 1.91011 1.70312 1.35027 1.43637 1.42665 1.05175 1.41605 1.42655 1.17755 0.86589 0.90366 0.89336 1.21279 0.91493 1.13602 1.08984 1.17703 0.93648 0.88692 0.87816 1.19508 0.89508 0.99376 1.38393 0.88662 1.26190 0.94961 1.01848 0.90630 1.69610 1.09584 1.31768 1.31938 0.86193 0.79510 0.79219 0.80026 1.19736 1.22059 1.17075 1.21689 0.94743 1.08636 1.04455 1.21624 0.91359 0.94552 0.94662 1.67291 1.39249 1.11691 1.09039 1.22010 0.93945 1.01151 0.99516 1.22171 0.95432 0.97897 0.92002 0.92854 0.92645 0.92501 0.90824 0.91439 0.93449 0.93035 0.95021 0.90737 0.94598 0.90419 0.90843 0.90524 0.89789 0.77559 0.76237 0.87208 0.90219 0.87222 0.85398 0.91113 0.90609 0.94693 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.19 37.16 0.34 -0.50 16 2 C -0.10 -0.69 2.44 -90.62 -0.22 -0.91 16 3 C -0.14 -0.98 9.02 37.15 0.33 -0.64 16 4 C 0.06 0.44 4.54 -3.82 -0.02 0.42 16 5 N -0.54 -4.49 4.12 -234.67 -0.97 -5.46 16 6 C 0.06 0.48 5.46 -3.84 -0.02 0.46 16 7 C -0.12 -1.03 5.57 -26.65 -0.15 -1.18 16 8 C 0.17 1.92 2.52 -67.81 -0.17 1.75 16 9 N -0.75 -9.61 5.09 -58.55 -0.30 -9.91 16 10 C 0.69 12.64 8.49 -86.92 -0.74 11.90 16 11 O -0.53 -11.88 14.29 5.30 0.08 -11.80 16 12 N -0.67 -12.63 5.40 -15.86 -0.09 -12.72 16 13 C 0.39 9.00 7.41 -154.67 -1.15 7.86 16 14 C -0.33 -7.84 7.06 -38.46 -0.27 -8.11 16 15 C 0.13 3.29 5.17 -106.55 -0.55 2.73 16 16 C -0.44 -11.57 9.67 -37.65 -0.36 -11.93 16 17 H 0.10 2.62 8.06 -52.48 -0.42 2.20 16 18 C 0.08 2.13 5.48 -17.34 -0.10 2.03 16 19 N -0.80 -20.76 13.92 55.55 0.77 -19.99 16 20 Si 0.92 20.24 24.44 -169.99 -4.15 16.08 16 21 H -0.27 -5.54 6.46 56.52 0.37 -5.18 16 22 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.25 -5.69 6.84 56.52 0.39 -5.30 16 24 C -0.27 -6.38 9.85 -39.06 -0.38 -6.77 16 25 C 0.13 2.97 11.10 -18.05 -0.20 2.77 16 26 N -0.55 -13.56 7.89 -12.75 -0.10 -13.66 16 27 C -0.13 -1.43 5.67 -26.65 -0.15 -1.59 16 28 C 0.05 0.51 5.04 -3.83 -0.02 0.49 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.55 6.02 -51.93 -0.31 0.24 16 33 H 0.07 0.56 7.69 -51.93 -0.40 0.16 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.17 7.58 -51.93 -0.39 0.78 16 43 H 0.39 3.85 8.62 -40.82 -0.35 3.50 16 44 H 0.40 6.08 8.71 -40.82 -0.36 5.73 16 45 H 0.11 2.51 4.26 -52.49 -0.22 2.29 16 46 H 0.29 6.69 8.29 -40.82 -0.34 6.35 16 47 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 48 H 0.13 2.53 8.06 -52.49 -0.42 2.11 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.08 0.74 5.74 -51.93 -0.30 0.45 16 LS Contribution 404.29 15.07 6.09 6.09 Total: -1.00 -31.32 404.29 -11.19 -42.51 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -8.71 Total: 10.07 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.82 Total: -1.22 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.68 Total: -61.74 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.15 Total: 16.08 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.32 -11.19 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871720315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.320 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds