Wall clock time and date at job start Wed Apr 1 2020 04:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47206 * 2 1 4 4 C 1.53004 * 109.46823 * 120.00068 * 2 1 3 5 5 N 1.46897 * 109.47035 * 177.17029 * 4 2 1 6 6 C 1.46842 * 111.00154 * 183.86099 * 5 4 2 7 7 C 1.53038 * 109.52428 * 185.84160 * 6 5 4 8 8 C 1.53119 * 109.27610 * 300.81810 * 7 6 5 9 9 N 1.46500 * 109.52293 * 177.56367 * 8 7 6 10 10 C 1.34775 * 120.00108 * 154.99879 * 9 8 7 11 11 O 1.21579 * 120.00095 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99796 * 179.97438 * 10 9 8 13 13 C 1.39460 * 119.99908 * 184.53385 * 12 10 9 14 14 C 1.38647 * 119.64882 * 185.31739 * 13 12 10 15 15 C 1.40817 * 118.67504 * 179.72789 * 14 13 12 16 16 C 1.41544 * 121.00037 * 180.25625 * 15 14 13 17 17 H 1.08005 * 120.00213 * 149.67326 * 16 15 14 18 18 C 1.40034 * 119.99730 * 329.67816 * 16 15 14 19 19 N 1.30743 * 119.99788 * 168.05800 * 18 16 15 20 20 Si 1.86799 * 119.99844 * 348.05692 * 18 16 15 21 21 H 1.48503 * 109.47119 * 88.39087 * 20 18 16 22 22 H 1.48500 * 109.47052 * 208.38804 * 20 18 16 23 23 H 1.48497 * 109.47183 * 328.38735 * 20 18 16 24 24 C 1.41171 * 118.00483 * 0.27573 * 15 14 13 25 25 C 1.36595 * 119.12710 * 359.97438 * 24 15 14 26 26 N 1.32062 * 121.25769 * 0.02562 * 25 24 15 27 27 C 1.53118 * 109.16506 * 57.65437 * 8 7 6 28 28 C 1.46847 * 111.00061 * 308.06722 * 5 4 2 29 29 H 1.08999 * 109.47446 * 184.76396 * 1 2 3 30 30 H 1.09004 * 109.47465 * 304.76503 * 1 2 3 31 31 H 1.09001 * 109.47362 * 64.76444 * 1 2 3 32 32 H 1.09003 * 109.47046 * 239.99873 * 2 1 3 33 33 H 1.09004 * 109.47205 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47553 * 300.00065 * 3 2 1 35 35 H 1.09003 * 109.47222 * 59.99981 * 3 2 1 36 36 H 1.09001 * 109.46944 * 57.17201 * 4 2 1 37 37 H 1.09000 * 109.47081 * 297.17386 * 4 2 1 38 38 H 1.08998 * 109.46410 * 65.82209 * 6 5 4 39 39 H 1.09001 * 109.45276 * 305.84400 * 6 5 4 40 40 H 1.09003 * 109.50164 * 180.87605 * 7 6 5 41 41 H 1.08997 * 109.50358 * 60.75852 * 7 6 5 42 42 H 1.09007 * 109.52086 * 297.68386 * 8 7 6 43 43 H 0.97005 * 119.99657 * 334.99219 * 9 8 7 44 44 H 0.96997 * 120.00336 * 4.54224 * 12 10 9 45 45 H 1.07997 * 120.66044 * 0.02562 * 14 13 12 46 46 H 0.97000 * 119.99659 * 180.02562 * 19 18 16 47 47 H 1.08001 * 120.43729 * 179.97438 * 24 15 14 48 48 H 1.08000 * 119.36781 * 179.97438 * 25 24 15 49 49 H 1.08999 * 109.49899 * 62.28666 * 27 8 7 50 50 H 1.08991 * 109.50344 * 182.40448 * 27 8 7 51 51 H 1.08996 * 109.46515 * 294.17806 * 28 5 4 52 52 H 1.09004 * 109.46387 * 54.15319 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5073 -0.7808 1.2156 6 6 4.0292 -1.5471 2.3544 7 6 5.5573 -1.4657 2.3683 8 6 6.1056 -2.0305 1.0550 9 7 7.5649 -1.9019 1.0381 10 6 8.3060 -2.7347 0.2807 11 8 7.7636 -3.5929 -0.3882 12 7 9.6485 -2.6160 0.2648 13 6 10.4089 -3.4139 -0.5896 14 6 11.7929 -3.3659 -0.5221 15 6 12.5406 -4.1844 -1.3905 16 6 13.9557 -4.1785 -1.3598 17 1 14.5051 -5.0718 -1.6181 18 6 14.6432 -3.0146 -0.9946 19 7 15.9244 -3.0652 -0.7389 20 14 13.7299 -1.3897 -0.8727 21 1 13.1755 -1.2350 0.4963 22 1 14.6666 -0.2729 -1.1565 23 1 12.6216 -1.3694 -1.8609 24 6 11.8364 -5.0107 -2.2929 25 6 10.4706 -4.9861 -2.2897 26 7 9.8012 -4.2057 -1.4610 27 6 5.5092 -1.2463 -0.1172 28 6 3.9825 -1.3340 -0.0590 29 1 -0.3634 -1.0241 0.0853 30 1 -0.3634 0.5860 0.8442 31 1 -0.3634 0.4381 -0.9296 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6357 -1.7333 1.2749 37 1 1.7185 -0.1790 2.1385 38 1 3.7218 -2.5888 2.2627 39 1 3.6350 -1.1323 3.2822 40 1 5.9451 -2.0474 3.2047 41 1 5.8654 -0.4255 2.4739 42 1 5.8316 -3.0819 0.9681 43 1 7.9976 -1.2173 1.5720 44 1 10.0858 -1.9759 0.8478 45 1 12.2876 -2.7173 0.1856 46 1 16.4006 -2.2590 -0.4855 47 1 12.3704 -5.6538 -2.9767 48 1 9.9280 -5.6164 -2.9787 49 1 5.8166 -0.2027 -0.0507 50 1 5.8626 -1.6713 -1.0566 51 1 3.6753 -2.3767 -0.1394 52 1 3.5545 -0.7647 -0.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871720315.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:04 Heat of formation + Delta-G solvation = -15.341005 kcal Electronic energy + Delta-G solvation = -30278.126374 eV Core-core repulsion = 26276.333021 eV Total energy + Delta-G solvation = -4001.793354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.65923 -40.54972 -39.71095 -37.29765 -36.09441 -35.55215 -35.07630 -33.20436 -32.19968 -31.82436 -30.34834 -27.93301 -27.92162 -26.85089 -24.36961 -24.29942 -24.19654 -22.95616 -21.67722 -21.21080 -20.43458 -19.70266 -19.42080 -18.13665 -17.51850 -17.12341 -16.55077 -16.51788 -16.25726 -16.06748 -15.97333 -15.90081 -15.26694 -15.09475 -14.91405 -14.83396 -14.73383 -14.52234 -14.30495 -13.90655 -13.50940 -13.41375 -13.23221 -13.02734 -12.79095 -12.74380 -12.65418 -12.61031 -12.34013 -12.18712 -12.06200 -11.82464 -11.81861 -11.61754 -11.57819 -11.48349 -11.34609 -11.18671 -11.11420 -10.14653 -10.03640 -9.70463 -9.25779 -8.99079 -8.94002 -6.73288 0.60230 0.76477 1.22810 1.39803 1.48039 1.53525 2.09340 2.21203 2.71111 2.91128 3.09092 3.53478 3.70149 3.78860 3.97370 4.00114 4.04406 4.11640 4.23845 4.27360 4.39494 4.43830 4.49148 4.58960 4.60018 4.61989 4.66761 4.75897 4.76338 4.76806 4.79541 4.87109 4.92245 4.98739 5.04933 5.08689 5.12042 5.14053 5.18050 5.25987 5.30905 5.31435 5.47074 5.52374 5.54186 5.57585 5.68411 5.85760 6.10226 6.12112 6.16483 6.28563 6.52308 6.68614 6.93237 7.53702 7.76465 8.11444 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.002036 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.771505 B =13747.630187 C =14134.607983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.134 4.134 4 C 0.062 3.938 5 N -0.536 5.536 6 C 0.060 3.940 7 C -0.111 4.111 8 C 0.166 3.834 9 N -0.725 5.725 10 C 0.692 3.308 11 O -0.575 6.575 12 N -0.665 5.665 13 C 0.385 3.615 14 C -0.332 4.332 15 C 0.115 3.885 16 C -0.468 4.468 17 H 0.066 0.934 18 C 0.050 3.950 19 N -0.836 5.836 20 Si 0.973 3.027 21 H -0.242 1.242 22 H -0.278 1.278 23 H -0.265 1.265 24 C -0.282 4.282 25 C 0.129 3.871 26 N -0.572 5.572 27 C -0.120 4.120 28 C 0.061 3.939 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.029 0.971 37 H 0.086 0.914 38 H 0.029 0.971 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.411 0.589 44 H 0.421 0.579 45 H 0.121 0.879 46 H 0.298 0.702 47 H 0.121 0.879 48 H 0.158 0.842 49 H 0.078 0.922 50 H 0.043 0.957 51 H 0.023 0.977 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.808 11.950 8.557 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 C -0.192 4.192 4 C -0.066 4.066 5 N -0.260 5.260 6 C -0.069 4.069 7 C -0.149 4.149 8 C 0.061 3.939 9 N -0.382 5.382 10 C 0.392 3.608 11 O -0.449 6.449 12 N -0.314 5.314 13 C 0.155 3.845 14 C -0.358 4.358 15 C 0.106 3.894 16 C -0.499 4.499 17 H 0.084 0.916 18 C -0.167 4.167 19 N -0.462 5.462 20 Si 0.796 3.204 21 H -0.167 1.167 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.306 4.306 25 C -0.022 4.022 26 N -0.292 5.292 27 C -0.159 4.159 28 C -0.068 4.068 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.247 0.753 44 H 0.259 0.741 45 H 0.139 0.861 46 H 0.109 0.891 47 H 0.139 0.861 48 H 0.175 0.825 49 H 0.096 0.904 50 H 0.062 0.938 51 H 0.041 0.959 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.847 11.723 8.058 30.383 hybrid contribution 1.522 -0.202 0.135 1.542 sum -25.324 11.522 8.193 29.003 Atomic orbital electron populations 1.21789 0.94178 1.01862 1.02331 1.21255 0.96135 0.97151 0.97428 1.21682 1.01344 0.94883 1.01259 1.22209 0.86182 0.98802 0.99381 1.62025 1.09472 1.52569 1.01979 1.22059 0.94167 0.95838 0.94793 1.21804 0.95154 1.02888 0.95082 1.20884 0.77206 0.99354 0.96506 1.45095 1.06916 1.36682 1.49514 1.16229 0.81132 0.82449 0.81038 1.90984 1.71024 1.37162 1.45697 1.42547 1.05431 1.41299 1.42169 1.17960 0.86902 0.90236 0.89373 1.21356 0.91873 1.13611 1.08928 1.17899 0.93398 0.89582 0.88476 1.19490 0.90254 0.99343 1.40798 0.91591 1.26868 0.95584 1.04311 0.89962 1.69626 1.10622 1.33239 1.32730 0.85435 0.78168 0.75855 0.80906 1.16691 1.20456 1.18933 1.21880 0.95257 1.08794 1.04640 1.22084 0.91294 0.94267 0.94575 1.67428 1.39932 1.12217 1.09626 1.21896 0.95178 1.01034 0.97797 1.22044 0.94163 0.97387 0.93184 0.92774 0.91960 0.92316 0.91785 0.92651 0.93235 0.92540 0.95224 0.89613 0.95279 0.88321 0.89772 0.89149 0.92477 0.75272 0.74093 0.86117 0.89098 0.86128 0.82515 0.90357 0.93841 0.95916 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.19 71.98 0.66 -0.73 16 2 C -0.10 -1.21 2.44 -10.80 -0.03 -1.24 16 3 C -0.13 -1.64 9.02 71.98 0.65 -0.99 16 4 C 0.06 0.76 4.54 86.31 0.39 1.15 16 5 N -0.54 -7.88 4.12 -896.37 -3.69 -11.57 16 6 C 0.06 0.79 5.46 86.33 0.47 1.27 16 7 C -0.11 -1.55 5.57 30.65 0.17 -1.38 16 8 C 0.17 3.60 2.52 45.07 0.11 3.71 16 9 N -0.72 -17.21 5.09 -457.43 -2.33 -19.54 16 10 C 0.69 24.42 8.49 179.05 1.52 25.94 16 11 O -0.57 -25.79 14.29 -3.96 -0.06 -25.85 16 12 N -0.67 -23.80 5.40 -322.36 -1.74 -25.54 16 13 C 0.39 17.50 7.41 132.76 0.98 18.48 16 14 C -0.33 -15.60 7.06 23.00 0.16 -15.44 16 15 C 0.11 5.86 5.17 -21.11 -0.11 5.75 16 16 C -0.47 -25.47 9.67 23.52 0.23 -25.25 16 17 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 18 C 0.05 2.54 5.48 85.29 0.47 3.01 16 19 N -0.84 -43.59 13.92 21.84 0.30 -43.29 16 20 Si 0.97 40.52 24.44 68.60 1.68 42.20 16 21 H -0.24 -8.90 6.46 99.48 0.64 -8.26 16 22 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.26 -11.76 6.84 99.48 0.68 -11.08 16 24 C -0.28 -13.35 9.85 22.61 0.22 -13.12 16 25 C 0.13 5.86 11.10 84.27 0.94 6.80 16 26 N -0.57 -27.75 7.89 -194.26 -1.53 -29.29 16 27 C -0.12 -2.62 5.67 30.65 0.17 -2.45 16 28 C 0.06 1.11 5.04 86.33 0.44 1.55 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.89 6.02 -2.39 -0.01 0.88 16 33 H 0.05 0.82 7.69 -2.38 -0.02 0.80 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.10 0.96 8.12 -2.39 -0.02 0.95 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.59 7.58 -2.38 -0.02 1.57 16 43 H 0.41 6.76 8.62 -92.70 -0.80 5.96 16 44 H 0.42 11.54 8.71 -92.71 -0.81 10.73 16 45 H 0.12 5.30 4.26 -2.91 -0.01 5.29 16 46 H 0.30 13.83 8.29 -92.71 -0.77 13.06 16 47 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 48 H 0.16 6.02 8.06 -2.91 -0.02 5.99 16 49 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 50 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.09 1.52 5.74 -2.38 -0.01 1.51 16 Total: -1.00 -69.09 404.29 -0.68 -69.78 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -0.77 Total: 36.04 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 7.45 Total: 7.05 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -8.99 Total: -129.23 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.06 Total: -25.85 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.68 Total: 42.20 kcal Total: -69.09 -0.68 -69.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871720315.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.436 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds