Wall clock time and date at job start Wed Apr 1 2020 04:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47515 * 2 1 4 4 C 1.53006 * 109.46974 * 240.00126 * 2 1 3 5 5 N 1.46904 * 109.47449 * 120.00247 * 2 1 3 6 6 C 1.47840 * 110.99780 * 64.34190 * 5 2 1 7 7 C 1.54900 * 104.89455 * 213.58138 * 6 5 2 8 8 C 1.55432 * 101.51852 * 37.06590 * 7 6 5 9 9 H 1.09002 * 110.84439 * 82.82956 * 8 7 6 10 10 C 1.53014 * 110.69241 * 205.97496 * 8 7 6 11 11 N 1.46496 * 109.46881 * 288.62707 * 10 8 7 12 12 C 1.34777 * 119.99707 * 180.02562 * 11 10 8 13 13 O 1.21583 * 119.99913 * 359.97438 * 12 11 10 14 14 N 1.34779 * 120.00048 * 179.97438 * 12 11 10 15 15 C 1.39457 * 120.00075 * 184.40329 * 14 12 11 16 16 C 1.38646 * 119.64974 * 174.71687 * 15 14 12 17 17 C 1.40818 * 118.67175 * 179.79765 * 16 15 14 18 18 C 1.41549 * 120.99106 * 180.21575 * 17 16 15 19 19 H 1.08000 * 119.99663 * 211.70913 * 18 17 16 20 20 C 1.40024 * 120.00389 * 31.70749 * 18 17 16 21 21 N 1.30742 * 120.00029 * 7.01353 * 20 18 17 22 22 Si 1.86801 * 120.00317 * 187.01185 * 20 18 17 23 23 H 1.48499 * 109.46946 * 89.99920 * 22 20 18 24 24 H 1.48497 * 109.47341 * 210.00257 * 22 20 18 25 25 H 1.48501 * 109.46828 * 330.00173 * 22 20 18 26 26 C 1.41161 * 118.00893 * 0.46515 * 17 16 15 27 27 C 1.36591 * 119.12417 * 359.75232 * 26 17 16 28 28 N 1.32067 * 121.26346 * 0.02562 * 27 26 17 29 29 C 1.47437 * 110.99906 * 303.50127 * 5 2 1 30 30 H 1.09007 * 109.46659 * 302.25952 * 1 2 3 31 31 H 1.08999 * 109.47335 * 62.25575 * 1 2 3 32 32 H 1.08996 * 109.47042 * 182.26205 * 1 2 3 33 33 H 1.09001 * 109.47128 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46906 * 300.00373 * 3 2 1 35 35 H 1.09005 * 109.46598 * 60.00245 * 3 2 1 36 36 H 1.08997 * 109.46976 * 299.99952 * 4 2 1 37 37 H 1.08999 * 109.46589 * 59.99936 * 4 2 1 38 38 H 1.08998 * 109.46997 * 180.02562 * 4 2 1 39 39 H 1.09004 * 110.37656 * 332.46715 * 6 5 2 40 40 H 1.09005 * 110.37707 * 94.69684 * 6 5 2 41 41 H 1.09004 * 110.99602 * 155.21987 * 7 6 5 42 42 H 1.09004 * 110.99315 * 279.03426 * 7 6 5 43 43 H 1.08996 * 109.46688 * 48.62279 * 10 8 7 44 44 H 1.08997 * 109.46473 * 168.62629 * 10 8 7 45 45 H 0.96998 * 120.00303 * 359.97438 * 11 10 8 46 46 H 0.97003 * 119.99924 * 4.39951 * 14 12 11 47 47 H 1.07998 * 120.66099 * 359.97438 * 16 15 14 48 48 H 0.96999 * 120.00452 * 179.97438 * 21 20 18 49 49 H 1.08003 * 120.43702 * 179.77431 * 26 17 16 50 50 H 1.08003 * 119.36478 * 179.97438 * 27 26 17 51 51 H 1.09001 * 109.88904 * 242.66274 * 29 5 2 52 52 H 1.09003 * 109.88927 * 3.68806 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 1.6329 -2.1193 1.1824 7 6 1.3957 -2.4853 2.6687 8 6 0.7454 -1.1812 3.2095 9 1 -0.3230 -1.1625 2.9944 10 6 0.9955 -1.0352 4.7120 11 7 0.1937 -2.0226 5.4387 12 6 0.2526 -2.0802 6.7839 13 8 0.9717 -1.3129 7.3943 14 7 -0.4855 -2.9882 7.4526 15 6 -0.4955 -2.9881 8.8471 16 6 -1.3405 -3.8519 9.5270 17 6 -1.3307 -3.8376 10.9351 18 6 -2.1699 -4.7017 11.6786 19 1 -2.5533 -4.3881 12.6383 20 6 -2.5029 -5.9631 11.1698 21 7 -1.9324 -6.3986 10.0770 22 14 -3.7621 -7.0236 12.0525 23 1 -5.1174 -6.7269 11.5229 24 1 -3.4460 -8.4571 11.8287 25 1 -3.7240 -6.7296 13.5076 26 6 -0.4630 -2.9320 11.5829 27 6 0.3302 -2.1157 10.8278 28 7 0.2986 -2.1588 9.5082 29 6 1.4796 -0.0743 2.4241 30 1 -0.3633 0.5486 0.8691 31 1 -0.3634 0.4784 -0.9095 32 1 -0.3633 -1.0268 0.0406 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8901 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1300 -0.7217 -1.2491 39 1 0.7176 -2.2576 0.6068 40 1 2.4374 -2.7257 0.7660 41 1 0.7134 -3.3307 2.7587 42 1 2.3385 -2.6910 3.1755 43 1 2.0523 -1.1998 4.9220 44 1 0.7134 -0.0319 5.0313 45 1 -0.3803 -2.6345 4.9518 46 1 -1.0098 -3.6418 6.9639 47 1 -1.9910 -4.5242 8.9875 48 1 -2.1628 -7.2725 9.7248 49 1 -0.4265 -2.8855 12.6613 50 1 0.9952 -1.4210 11.3193 51 1 2.2939 0.3295 3.0258 52 1 0.7828 0.7217 2.1613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871735872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:25 Heat of formation + Delta-G solvation = 12.534578 kcal Electronic energy + Delta-G solvation = -29958.880073 eV Core-core repulsion = 25958.295495 eV Total energy + Delta-G solvation = -4000.584578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.44146 -39.66930 -38.05867 -36.22808 -34.31979 -33.77072 -33.65052 -30.59870 -30.33965 -29.73345 -28.45647 -27.71381 -27.36073 -25.96546 -24.91044 -22.31692 -21.97767 -21.61687 -20.65589 -19.99280 -19.02230 -17.97496 -17.64829 -16.89903 -16.27202 -15.53944 -15.30225 -15.21739 -14.85620 -14.54080 -14.38070 -14.18720 -14.17816 -13.95378 -13.82269 -13.37991 -13.13551 -12.84400 -12.76378 -12.59151 -12.55175 -12.45197 -12.25093 -12.07165 -11.95998 -11.60248 -11.41775 -11.35542 -11.33610 -11.23147 -11.02702 -10.96548 -10.89063 -10.77081 -10.26729 -10.12537 -9.71390 -9.55450 -9.36716 -8.76996 -8.55424 -7.90188 -7.70575 -7.01109 -6.72265 -4.60653 2.71067 2.81951 3.03182 3.04198 3.06743 3.25125 3.59800 3.87591 3.90520 4.22574 4.32186 4.49189 4.54490 4.58297 4.68332 4.75283 4.81163 4.99624 5.10299 5.16512 5.18107 5.21956 5.25564 5.38375 5.44537 5.50159 5.51081 5.59276 5.62888 5.67623 5.71595 5.76902 5.79983 5.84853 5.89899 5.97778 6.00521 6.09092 6.54954 6.62165 6.69085 6.74031 6.80743 6.85133 6.97590 7.13406 7.30547 7.43035 7.50168 7.89272 8.13182 8.41679 8.47692 8.73864 8.79030 9.20456 9.72818 10.15788 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021152 B = 0.001818 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.458314 B =15400.888241 C =16319.977511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 C -0.138 4.138 4 C -0.139 4.139 5 N -0.515 5.515 6 C 0.038 3.962 7 C -0.124 4.124 8 C -0.120 4.120 9 H 0.080 0.920 10 C 0.155 3.845 11 N -0.754 5.754 12 C 0.691 3.309 13 O -0.533 6.533 14 N -0.668 5.668 15 C 0.354 3.646 16 C -0.236 4.236 17 C 0.146 3.854 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.915 3.085 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.278 4.278 27 C 0.117 3.883 28 N -0.548 5.548 29 C 0.046 3.954 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.390 0.610 46 H 0.404 0.596 47 H 0.127 0.873 48 H 0.280 0.720 49 H 0.102 0.898 50 H 0.123 0.877 51 H 0.082 0.918 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 6.677 -22.220 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.004 3.996 3 C -0.196 4.196 4 C -0.197 4.197 5 N -0.239 5.239 6 C -0.089 4.089 7 C -0.162 4.162 8 C -0.140 4.140 9 H 0.098 0.902 10 C 0.030 3.970 11 N -0.412 5.412 12 C 0.390 3.610 13 O -0.404 6.404 14 N -0.316 5.316 15 C 0.127 3.873 16 C -0.262 4.262 17 C 0.138 3.862 18 C -0.492 4.492 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.428 5.428 22 Si 0.739 3.261 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.302 4.302 27 C -0.037 4.037 28 N -0.267 5.267 29 C -0.082 4.082 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.223 0.777 46 H 0.238 0.762 47 H 0.144 0.856 48 H 0.091 0.909 49 H 0.121 0.879 50 H 0.140 0.860 51 H 0.100 0.900 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.215 7.871 -22.345 24.063 hybrid contribution -2.582 -1.955 0.310 3.254 sum 1.633 5.916 -22.036 22.874 Atomic orbital electron populations 1.22545 0.96969 1.02208 1.02451 1.21230 0.92432 0.94889 0.91022 1.21868 1.01968 0.94131 1.01633 1.21873 1.01918 1.00025 0.95855 1.63862 1.56837 1.02066 1.01174 1.23091 0.99742 0.89320 0.96752 1.22860 1.01529 0.96777 0.95076 1.22691 1.00343 0.96178 0.94783 0.90166 1.21033 0.95637 0.92052 0.88312 1.45168 1.50406 1.40398 1.05221 1.16090 0.81540 0.82192 0.81181 1.91015 1.40775 1.42325 1.66288 1.42562 1.49383 1.34497 1.05169 1.17984 0.93902 0.93806 0.81595 1.21531 1.05132 1.04374 0.95136 1.17584 0.88687 0.88969 0.91001 1.19534 1.26188 0.98822 1.04674 0.90100 1.25904 0.95246 0.98467 0.94568 1.69743 1.35374 1.18717 1.18948 0.86207 0.80634 0.78559 0.80676 1.19356 1.20279 1.18586 1.21751 1.03685 1.05551 0.99226 1.21509 0.96715 0.96644 0.88822 1.67225 1.25146 1.25143 1.09178 1.22833 0.98320 0.96155 0.90853 0.92077 0.92090 0.92266 0.91750 0.92378 0.92491 0.92613 0.92326 0.91778 0.93073 0.90336 0.90778 0.90141 0.91439 0.91803 0.77737 0.76203 0.85569 0.90942 0.87936 0.85958 0.89981 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.20 7.91 37.16 0.29 -0.90 16 2 C 0.09 0.66 0.66 -131.59 -0.09 0.57 16 3 C -0.14 -0.92 8.40 37.16 0.31 -0.61 16 4 C -0.14 -0.87 8.29 37.16 0.31 -0.57 16 5 N -0.52 -4.21 5.00 -215.64 -1.08 -5.28 16 6 C 0.04 0.29 5.10 -2.30 -0.01 0.28 16 7 C -0.12 -1.01 6.47 -24.44 -0.16 -1.17 16 8 C -0.12 -1.02 2.96 -88.63 -0.26 -1.28 16 9 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 10 C 0.15 1.82 4.97 -4.04 -0.02 1.80 16 11 N -0.75 -10.15 5.48 -65.22 -0.36 -10.51 16 12 C 0.69 13.39 8.52 -86.92 -0.74 12.65 16 13 O -0.53 -12.79 14.60 5.29 0.08 -12.71 16 14 N -0.67 -13.27 5.40 -15.86 -0.09 -13.36 16 15 C 0.35 8.69 7.42 -154.68 -1.15 7.54 16 16 C -0.24 -6.01 8.57 -38.46 -0.33 -6.34 16 17 C 0.15 3.87 5.55 -106.55 -0.59 3.27 16 18 C -0.46 -11.90 9.12 -37.65 -0.34 -12.24 16 19 H 0.08 2.00 7.86 -52.49 -0.41 1.59 16 20 C 0.08 1.84 5.33 -17.35 -0.09 1.74 16 21 N -0.80 -19.92 10.93 55.55 0.61 -19.32 16 22 Si 0.91 18.14 29.57 -169.99 -5.03 13.12 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.28 -6.89 9.85 -39.07 -0.38 -7.28 16 27 C 0.12 2.86 11.10 -18.05 -0.20 2.66 16 28 N -0.55 -14.28 7.85 -12.75 -0.10 -14.38 16 29 C 0.05 0.39 5.20 -2.84 -0.01 0.37 16 30 H 0.06 0.42 6.21 -51.92 -0.32 0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.40 6.14 -51.93 -0.32 0.08 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.39 6.72 -51.93 -0.35 0.04 16 36 H 0.05 0.35 6.83 -51.93 -0.35 -0.01 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.36 5.39 -51.93 -0.28 0.08 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.76 7.95 -51.93 -0.41 0.34 16 43 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.39 4.07 8.49 -40.82 -0.35 3.72 16 46 H 0.40 6.53 8.71 -40.82 -0.36 6.18 16 47 H 0.13 3.18 6.44 -52.49 -0.34 2.84 16 48 H 0.28 6.32 8.29 -40.82 -0.34 5.98 16 49 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 50 H 0.12 2.62 8.06 -52.48 -0.42 2.19 16 51 H 0.08 0.75 7.82 -51.93 -0.41 0.34 16 52 H 0.06 0.50 4.76 -51.93 -0.25 0.25 16 LS Contribution 404.56 15.07 6.10 6.10 Total: -1.00 -31.96 404.56 -11.68 -43.64 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -8.34 Total: 12.19 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -3.47 Total: 0.50 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -1.01 Total: -62.84 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.12 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.96 -11.68 -43.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.174 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds