Wall clock time and date at job start Wed Apr 1 2020 04:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47115 * 2 1 4 4 C 1.53001 * 109.47366 * 239.99569 * 2 1 3 5 5 N 1.46907 * 109.46906 * 120.00092 * 2 1 3 6 6 C 1.47839 * 111.00385 * 63.78836 * 5 2 1 7 7 C 1.54898 * 104.89682 * 213.57916 * 6 5 2 8 8 C 1.55438 * 101.51959 * 37.06743 * 7 6 5 9 9 H 1.09007 * 110.84327 * 82.82445 * 8 7 6 10 10 C 1.53004 * 110.69286 * 205.97227 * 8 7 6 11 11 N 1.46501 * 109.47031 * 288.62539 * 10 8 7 12 12 C 1.34776 * 119.99796 * 179.97438 * 11 10 8 13 13 O 1.21580 * 120.00021 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00026 * 179.97438 * 12 11 10 15 15 C 1.39245 * 120.00233 * 185.04894 * 14 12 11 16 16 C 1.39683 * 119.57742 * 174.54414 * 15 14 12 17 17 C 1.38646 * 119.49533 * 179.79113 * 16 15 14 18 18 C 1.38348 * 118.66946 * 0.47451 * 17 16 15 19 19 C 1.40568 * 119.13468 * 359.74814 * 18 17 16 20 20 C 1.41335 * 119.78979 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00142 * 0.02562 * 20 19 18 22 22 C 1.40027 * 119.99824 * 180.02562 * 20 19 18 23 23 N 1.30744 * 120.00582 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99792 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47127 * 59.99746 * 24 22 20 26 26 H 1.48498 * 109.47060 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47305 * 299.99681 * 24 22 20 28 28 N 1.31909 * 119.57544 * 354.81446 * 15 14 12 29 29 C 1.47449 * 110.99730 * 302.94487 * 5 2 1 30 30 H 1.09003 * 109.47268 * 302.46080 * 1 2 3 31 31 H 1.08997 * 109.47073 * 62.46345 * 1 2 3 32 32 H 1.08998 * 109.47434 * 182.46221 * 1 2 3 33 33 H 1.09004 * 109.47537 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47389 * 299.99748 * 3 2 1 35 35 H 1.09000 * 109.47304 * 60.00321 * 3 2 1 36 36 H 1.09000 * 109.47156 * 300.00690 * 4 2 1 37 37 H 1.09005 * 109.46635 * 60.00095 * 4 2 1 38 38 H 1.08991 * 109.47123 * 180.02562 * 4 2 1 39 39 H 1.09001 * 110.37355 * 332.46998 * 6 5 2 40 40 H 1.09003 * 110.36993 * 94.69629 * 6 5 2 41 41 H 1.08999 * 110.99044 * 155.21728 * 7 6 5 42 42 H 1.08995 * 110.99652 * 279.03634 * 7 6 5 43 43 H 1.08996 * 109.46499 * 48.62461 * 10 8 7 44 44 H 1.09000 * 109.46633 * 168.62713 * 10 8 7 45 45 H 0.97002 * 120.00152 * 359.97438 * 11 10 8 46 46 H 0.97001 * 120.00111 * 5.05457 * 14 12 11 47 47 H 1.08000 * 120.25345 * 359.97438 * 16 15 14 48 48 H 1.08000 * 120.66401 * 180.20295 * 17 16 15 49 49 H 1.08007 * 120.43740 * 179.76911 * 18 17 16 50 50 H 0.96996 * 120.00768 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.88948 * 242.66642 * 29 5 2 52 52 H 1.09000 * 109.88708 * 3.69432 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6926 1.1995 6 6 1.6215 -2.1163 1.1890 7 6 1.3881 -2.4755 2.6775 8 6 0.7506 -1.1645 3.2170 9 1 -0.3187 -1.1381 3.0066 10 6 1.0085 -1.0156 4.7177 11 7 0.2021 -1.9943 5.4513 12 6 0.2675 -2.0486 6.7964 13 8 0.9953 -1.2851 7.4010 14 7 -0.4747 -2.9486 7.4713 15 6 -0.4882 -2.9361 8.8636 16 6 -1.3468 -3.7959 9.5526 17 6 -1.3556 -3.7850 10.9390 18 6 -0.5143 -2.9090 11.6013 19 6 0.3231 -2.0652 10.8511 20 6 1.1885 -1.1653 11.5135 21 1 1.2054 -1.1277 12.5927 22 6 2.0241 -0.3224 10.7704 23 7 2.0042 -0.3682 9.4639 24 14 3.1674 0.8675 11.6459 25 1 4.1035 0.1075 12.5126 26 1 3.9408 1.6406 10.6412 27 1 2.3672 1.8000 12.4798 28 7 0.3062 -2.1085 9.5150 29 6 1.4899 -0.0660 2.4246 30 1 -0.3634 0.5516 0.8671 31 1 -0.3633 0.4751 -0.9112 32 1 -0.3634 -1.0267 0.0441 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1299 -0.7217 -1.2489 39 1 0.7026 -2.2492 0.6179 40 1 2.4193 -2.7303 0.7710 41 1 0.6996 -3.3151 2.7733 42 1 2.3315 -2.6869 3.1808 43 1 2.0649 -1.1878 4.9236 44 1 0.7357 -0.0091 5.0351 45 1 -0.3788 -2.6032 4.9690 46 1 -0.9995 -3.6053 6.9872 47 1 -1.9966 -4.4661 9.0096 48 1 -2.0095 -4.4441 11.4908 49 1 -0.5007 -2.8740 12.6808 50 1 2.5827 0.2159 8.9492 51 1 2.3100 0.3334 3.0213 52 1 0.7982 0.7346 2.1623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881141725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:40 Heat of formation + Delta-G solvation = 36.803343 kcal Electronic energy + Delta-G solvation = -30739.999856 eV Core-core repulsion = 26740.467651 eV Total energy + Delta-G solvation = -3999.532205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.33023 -39.33462 -37.70438 -36.06263 -34.10202 -33.47523 -32.92093 -30.39904 -30.15918 -29.65641 -28.72708 -27.66082 -27.31410 -25.57913 -24.66376 -22.22752 -21.92965 -21.12934 -20.49703 -19.69843 -18.94345 -17.95591 -17.11541 -16.82732 -16.20386 -15.59591 -15.10219 -14.74707 -14.62576 -14.46096 -14.39096 -14.12973 -13.90773 -13.72274 -13.56266 -13.04679 -13.00883 -12.77120 -12.68299 -12.44858 -12.37929 -12.07131 -11.99250 -11.88945 -11.77665 -11.52747 -11.27693 -11.23716 -11.09945 -10.92381 -10.91370 -10.83065 -10.67755 -10.60914 -10.40638 -9.89373 -9.62826 -9.06409 -8.96553 -8.47487 -8.40006 -7.89709 -7.15109 -6.88546 -6.04940 -4.33577 2.90447 3.18567 3.20974 3.22689 3.29568 3.32667 3.67646 4.11912 4.27773 4.33298 4.43195 4.59381 4.62475 4.68236 4.84269 4.93833 5.01371 5.06822 5.20626 5.22502 5.27751 5.32608 5.33792 5.43895 5.51012 5.56678 5.56931 5.67603 5.72294 5.79824 5.86936 5.93961 5.94820 6.05261 6.07072 6.10538 6.15061 6.23292 6.52785 6.66591 6.77650 6.85340 6.90082 6.92151 7.04491 7.29542 7.42161 7.67518 7.80137 7.86764 8.22841 8.35410 8.72538 8.86203 9.11849 9.66532 10.33128 10.55793 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.002410 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.980597 B =11617.376812 C =13214.008920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.095 3.905 3 C -0.139 4.139 4 C -0.139 4.139 5 N -0.516 5.516 6 C 0.038 3.962 7 C -0.123 4.123 8 C -0.119 4.119 9 H 0.078 0.922 10 C 0.158 3.842 11 N -0.759 5.759 12 C 0.662 3.338 13 O -0.462 6.462 14 N -0.674 5.674 15 C 0.387 3.613 16 C -0.359 4.359 17 C -0.036 4.036 18 C -0.308 4.308 19 C 0.271 3.729 20 C -0.425 4.425 21 H 0.081 0.919 22 C 0.056 3.944 23 N -0.648 5.648 24 Si 0.894 3.106 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.268 1.268 28 N -0.471 5.471 29 C 0.046 3.954 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.382 0.618 46 H 0.394 0.606 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.272 0.728 51 H 0.082 0.918 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.976 -0.485 -21.846 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.005 3.995 3 C -0.197 4.197 4 C -0.196 4.196 5 N -0.240 5.240 6 C -0.089 4.089 7 C -0.161 4.161 8 C -0.138 4.138 9 H 0.096 0.904 10 C 0.033 3.967 11 N -0.420 5.420 12 C 0.361 3.639 13 O -0.326 6.326 14 N -0.322 5.322 15 C 0.147 3.853 16 C -0.386 4.386 17 C -0.060 4.060 18 C -0.331 4.331 19 C 0.146 3.854 20 C -0.456 4.456 21 H 0.099 0.901 22 C -0.174 4.174 23 N -0.266 5.266 24 Si 0.719 3.281 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.193 1.193 28 N -0.189 5.189 29 C -0.082 4.082 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.214 0.786 46 H 0.226 0.774 47 H 0.108 0.892 48 H 0.113 0.887 49 H 0.114 0.886 50 H 0.084 0.916 51 H 0.101 0.899 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.004 1.047 -21.957 21.982 hybrid contribution -1.679 -0.832 0.277 1.894 sum -1.683 0.215 -21.680 21.746 Atomic orbital electron populations 1.22546 0.97039 1.02175 1.02426 1.21215 0.92383 0.94867 0.91049 1.21872 1.01986 0.94165 1.01640 1.21868 1.01915 0.99985 0.95866 1.63863 1.56920 1.01987 1.01189 1.23090 0.99539 0.89456 0.96822 1.22841 1.01553 0.96787 0.94926 1.22677 1.00083 0.95915 0.95161 0.90397 1.20943 0.95580 0.92378 0.87808 1.45265 1.50093 1.41094 1.05503 1.16442 0.82947 0.83379 0.81179 1.91391 1.36997 1.39440 1.64773 1.42564 1.49613 1.34981 1.05068 1.18352 0.92123 0.92509 0.82315 1.20432 1.11785 1.11786 0.94550 1.20533 0.96144 0.96078 0.93251 1.21612 1.06844 1.06049 0.98583 1.18391 0.89953 0.90126 0.86973 1.19532 1.16692 1.15332 0.94023 0.90075 1.26193 0.97956 0.98095 0.95110 1.70334 1.25561 1.26239 1.04451 0.86611 0.80688 0.80825 0.79988 1.19243 1.20430 1.19260 1.68703 1.21123 1.20924 1.08174 1.22839 0.98440 0.96181 0.90718 0.92066 0.92147 0.92279 0.91748 0.92410 0.92445 0.92654 0.92376 0.91789 0.93165 0.90454 0.90948 0.90169 0.91629 0.92006 0.78590 0.77360 0.89239 0.88696 0.88643 0.91595 0.89936 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 7.91 37.16 0.29 -1.03 16 2 C 0.09 0.73 0.66 -131.60 -0.09 0.65 16 3 C -0.14 -1.05 8.39 37.15 0.31 -0.74 16 4 C -0.14 -0.96 8.30 37.16 0.31 -0.65 16 5 N -0.52 -4.69 5.00 -215.65 -1.08 -5.77 16 6 C 0.04 0.32 5.11 -2.31 -0.01 0.31 16 7 C -0.12 -1.10 6.47 -24.44 -0.16 -1.26 16 8 C -0.12 -1.14 2.96 -88.63 -0.26 -1.40 16 9 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 10 C 0.16 2.12 4.97 -4.04 -0.02 2.10 16 11 N -0.76 -11.13 5.48 -65.23 -0.36 -11.49 16 12 C 0.66 13.71 8.52 -86.92 -0.74 12.97 16 13 O -0.46 -11.97 12.10 5.30 0.06 -11.91 16 14 N -0.67 -13.57 5.39 -15.79 -0.09 -13.65 16 15 C 0.39 9.65 7.43 -154.99 -1.15 8.50 16 16 C -0.36 -8.23 9.95 -38.89 -0.39 -8.61 16 17 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 18 C -0.31 -7.91 9.83 -38.66 -0.38 -8.29 16 19 C 0.27 7.77 6.55 -85.00 -0.56 7.21 16 20 C -0.43 -11.93 9.14 -37.73 -0.34 -12.28 16 21 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 22 C 0.06 1.51 5.50 -17.34 -0.10 1.41 16 23 N -0.65 -18.34 8.98 55.55 0.50 -17.84 16 24 Si 0.89 19.63 29.56 -169.99 -5.02 14.61 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 28 N -0.47 -13.50 5.74 -10.26 -0.06 -13.56 16 29 C 0.05 0.44 5.20 -2.83 -0.01 0.43 16 30 H 0.06 0.47 6.25 -51.93 -0.32 0.15 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.43 6.10 -51.93 -0.32 0.11 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.45 6.68 -51.93 -0.35 0.11 16 36 H 0.05 0.37 6.86 -51.93 -0.36 0.02 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.39 5.39 -51.93 -0.28 0.11 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.84 7.95 -51.93 -0.41 0.42 16 43 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.38 4.32 8.49 -40.82 -0.35 3.97 16 46 H 0.39 6.08 8.71 -40.82 -0.36 5.72 16 47 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 48 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 49 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 50 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 51 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16 52 H 0.06 0.57 4.77 -51.93 -0.25 0.32 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -33.35 401.21 -12.12 -45.47 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.43 Total: 10.01 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.70 Total: -1.91 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -1.08 Total: -62.31 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.35 -12.12 -45.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.269 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds