Wall clock time and date at job start Wed Apr 1 2020 04:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47115 * 2 1 4 4 C 1.53001 * 109.47366 * 239.99569 * 2 1 3 5 5 N 1.46907 * 109.46906 * 120.00092 * 2 1 3 6 6 C 1.47839 * 111.00385 * 63.78836 * 5 2 1 7 7 C 1.54898 * 104.89682 * 213.57916 * 6 5 2 8 8 C 1.55438 * 101.51959 * 37.06743 * 7 6 5 9 9 H 1.09007 * 110.84327 * 82.82445 * 8 7 6 10 10 C 1.53004 * 110.69286 * 205.97227 * 8 7 6 11 11 N 1.46501 * 109.47031 * 288.62539 * 10 8 7 12 12 C 1.34776 * 119.99796 * 179.97438 * 11 10 8 13 13 O 1.21580 * 120.00021 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00026 * 179.97438 * 12 11 10 15 15 C 1.39245 * 120.00233 * 185.04894 * 14 12 11 16 16 C 1.39683 * 119.57742 * 174.54414 * 15 14 12 17 17 C 1.38646 * 119.49533 * 179.79113 * 16 15 14 18 18 C 1.38348 * 118.66946 * 0.47451 * 17 16 15 19 19 C 1.40568 * 119.13468 * 359.74814 * 18 17 16 20 20 C 1.41335 * 119.78979 * 180.02562 * 19 18 17 21 21 H 1.08000 * 120.00142 * 0.02562 * 20 19 18 22 22 C 1.40027 * 119.99824 * 180.02562 * 20 19 18 23 23 N 1.30744 * 120.00582 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99792 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47127 * 59.99746 * 24 22 20 26 26 H 1.48498 * 109.47060 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47305 * 299.99681 * 24 22 20 28 28 N 1.31909 * 119.57544 * 354.81446 * 15 14 12 29 29 C 1.47449 * 110.99730 * 302.94487 * 5 2 1 30 30 H 1.09003 * 109.47268 * 302.46080 * 1 2 3 31 31 H 1.08997 * 109.47073 * 62.46345 * 1 2 3 32 32 H 1.08998 * 109.47434 * 182.46221 * 1 2 3 33 33 H 1.09004 * 109.47537 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47389 * 299.99748 * 3 2 1 35 35 H 1.09000 * 109.47304 * 60.00321 * 3 2 1 36 36 H 1.09000 * 109.47156 * 300.00690 * 4 2 1 37 37 H 1.09005 * 109.46635 * 60.00095 * 4 2 1 38 38 H 1.08991 * 109.47123 * 180.02562 * 4 2 1 39 39 H 1.09001 * 110.37355 * 332.46998 * 6 5 2 40 40 H 1.09003 * 110.36993 * 94.69629 * 6 5 2 41 41 H 1.08999 * 110.99044 * 155.21728 * 7 6 5 42 42 H 1.08995 * 110.99652 * 279.03634 * 7 6 5 43 43 H 1.08996 * 109.46499 * 48.62461 * 10 8 7 44 44 H 1.09000 * 109.46633 * 168.62713 * 10 8 7 45 45 H 0.97002 * 120.00152 * 359.97438 * 11 10 8 46 46 H 0.97001 * 120.00111 * 5.05457 * 14 12 11 47 47 H 1.08000 * 120.25345 * 359.97438 * 16 15 14 48 48 H 1.08000 * 120.66401 * 180.20295 * 17 16 15 49 49 H 1.08007 * 120.43740 * 179.76911 * 18 17 16 50 50 H 0.96996 * 120.00768 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.88948 * 242.66642 * 29 5 2 52 52 H 1.09000 * 109.88708 * 3.69432 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6926 1.1995 6 6 1.6215 -2.1163 1.1890 7 6 1.3881 -2.4755 2.6775 8 6 0.7506 -1.1645 3.2170 9 1 -0.3187 -1.1381 3.0066 10 6 1.0085 -1.0156 4.7177 11 7 0.2021 -1.9943 5.4513 12 6 0.2675 -2.0486 6.7964 13 8 0.9953 -1.2851 7.4010 14 7 -0.4747 -2.9486 7.4713 15 6 -0.4882 -2.9361 8.8636 16 6 -1.3468 -3.7959 9.5526 17 6 -1.3556 -3.7850 10.9390 18 6 -0.5143 -2.9090 11.6013 19 6 0.3231 -2.0652 10.8511 20 6 1.1885 -1.1653 11.5135 21 1 1.2054 -1.1277 12.5927 22 6 2.0241 -0.3224 10.7704 23 7 2.0042 -0.3682 9.4639 24 14 3.1674 0.8675 11.6459 25 1 4.1035 0.1075 12.5126 26 1 3.9408 1.6406 10.6412 27 1 2.3672 1.8000 12.4798 28 7 0.3062 -2.1085 9.5150 29 6 1.4899 -0.0660 2.4246 30 1 -0.3634 0.5516 0.8671 31 1 -0.3633 0.4751 -0.9112 32 1 -0.3634 -1.0267 0.0441 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1299 -0.7217 -1.2489 39 1 0.7026 -2.2492 0.6179 40 1 2.4193 -2.7303 0.7710 41 1 0.6996 -3.3151 2.7733 42 1 2.3315 -2.6869 3.1808 43 1 2.0649 -1.1878 4.9236 44 1 0.7357 -0.0091 5.0351 45 1 -0.3788 -2.6032 4.9690 46 1 -0.9995 -3.6053 6.9872 47 1 -1.9966 -4.4661 9.0096 48 1 -2.0095 -4.4441 11.4908 49 1 -0.5007 -2.8740 12.6808 50 1 2.5827 0.2159 8.9492 51 1 2.3100 0.3334 3.0213 52 1 0.7982 0.7346 2.1623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881141725.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:38 Heat of formation + Delta-G solvation = 14.951711 kcal Electronic energy + Delta-G solvation = -30740.947414 eV Core-core repulsion = 26740.467651 eV Total energy + Delta-G solvation = -4000.479763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.26351 -40.81206 -39.47092 -37.05123 -35.85784 -34.81086 -34.72089 -32.19136 -31.47082 -30.51242 -30.22869 -28.22373 -28.01016 -27.43459 -25.83973 -23.69754 -23.00987 -22.94012 -21.49165 -21.23602 -19.76406 -19.57992 -18.71248 -18.07386 -17.47133 -16.75168 -16.37839 -16.30295 -16.21775 -15.67045 -15.57579 -15.30797 -15.07086 -14.83779 -14.75692 -14.56007 -14.40984 -14.06894 -13.68493 -13.65508 -13.34985 -13.15432 -12.96087 -12.85285 -12.71490 -12.67341 -12.55050 -12.54459 -12.29412 -12.18414 -12.02731 -11.92343 -11.77262 -11.73049 -11.62270 -11.45583 -11.37158 -10.84563 -10.83766 -9.89768 -9.79480 -9.16258 -9.07705 -8.75717 -7.99697 -6.38850 0.99493 1.30977 1.40021 1.51883 1.55025 1.83535 2.28104 2.59946 2.99757 3.06440 3.36442 3.62079 3.64770 3.92070 3.97722 4.03952 4.10017 4.27176 4.35607 4.38498 4.40468 4.46081 4.52283 4.68710 4.72629 4.73220 4.81620 4.83238 4.88030 4.90116 4.95307 4.98121 4.98909 5.00642 5.02987 5.09074 5.09927 5.14376 5.25853 5.29264 5.33627 5.40236 5.47376 5.68317 5.72764 5.88680 5.94640 6.05960 6.09308 6.27602 6.34438 6.44982 6.84494 7.09848 7.29947 8.05261 8.41023 8.60643 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.002410 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.980597 B =11617.376812 C =13214.008920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 C -0.138 4.138 4 C -0.136 4.136 5 N -0.528 5.528 6 C 0.042 3.958 7 C -0.120 4.120 8 C -0.103 4.103 9 H 0.095 0.905 10 C 0.164 3.836 11 N -0.733 5.733 12 C 0.655 3.345 13 O -0.517 6.517 14 N -0.661 5.661 15 C 0.364 3.636 16 C -0.346 4.346 17 C -0.034 4.034 18 C -0.332 4.332 19 C 0.236 3.764 20 C -0.467 4.467 21 H 0.085 0.915 22 C 0.009 3.991 23 N -0.684 5.684 24 Si 0.973 3.027 25 H -0.260 1.260 26 H -0.275 1.275 27 H -0.260 1.260 28 N -0.506 5.506 29 C 0.049 3.951 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.404 0.596 46 H 0.417 0.583 47 H 0.132 0.868 48 H 0.138 0.862 49 H 0.104 0.896 50 H 0.268 0.732 51 H 0.063 0.937 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 -1.648 -23.523 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.002 3.998 3 C -0.196 4.196 4 C -0.193 4.193 5 N -0.252 5.252 6 C -0.085 4.085 7 C -0.158 4.158 8 C -0.123 4.123 9 H 0.113 0.887 10 C 0.039 3.961 11 N -0.394 5.394 12 C 0.354 3.646 13 O -0.385 6.385 14 N -0.312 5.312 15 C 0.124 3.876 16 C -0.371 4.371 17 C -0.058 4.058 18 C -0.355 4.355 19 C 0.110 3.890 20 C -0.497 4.497 21 H 0.103 0.897 22 C -0.217 4.217 23 N -0.302 5.302 24 Si 0.795 3.205 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.185 1.185 28 N -0.226 5.226 29 C -0.079 4.079 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.240 0.760 46 H 0.254 0.746 47 H 0.150 0.850 48 H 0.155 0.845 49 H 0.122 0.878 50 H 0.079 0.921 51 H 0.082 0.918 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.613 -0.175 -23.706 23.762 hybrid contribution -1.314 -0.605 0.703 1.608 sum -2.927 -0.779 -23.004 23.202 Atomic orbital electron populations 1.22501 0.96280 1.02341 1.02658 1.21302 0.92976 0.94784 0.90758 1.21872 1.01409 0.94365 1.01948 1.21844 1.01395 1.00247 0.95824 1.63838 1.57460 1.02569 1.01375 1.23080 1.00227 0.88887 0.96271 1.22820 1.00987 0.96759 0.95239 1.22544 1.01095 0.96679 0.91948 0.88716 1.20926 0.94038 0.91023 0.90156 1.44938 1.49782 1.41160 1.03496 1.16750 0.82380 0.82853 0.82657 1.91383 1.39218 1.41456 1.66440 1.42382 1.49667 1.35453 1.03662 1.18869 0.92135 0.92472 0.84161 1.20916 1.10651 1.10751 0.94821 1.21020 0.95523 0.95476 0.93758 1.21797 1.07641 1.06867 0.99162 1.18892 0.91062 0.91239 0.87797 1.19859 1.18409 1.17015 0.94460 0.89668 1.27056 0.99255 0.99593 0.95817 1.70554 1.26539 1.27235 1.05921 0.85410 0.78292 0.78216 0.78632 1.18474 1.19988 1.18481 1.68662 1.22769 1.22597 1.08523 1.22740 0.97898 0.96353 0.90901 0.92681 0.91169 0.91987 0.92655 0.91077 0.93157 0.92277 0.91165 0.92602 0.91811 0.90289 0.89191 0.92003 0.93880 0.93866 0.76031 0.74580 0.84991 0.84472 0.87817 0.92115 0.91820 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 7.91 71.98 0.57 -1.61 16 2 C 0.09 1.27 0.66 3.52 0.00 1.28 16 3 C -0.14 -1.96 8.39 71.98 0.60 -1.36 16 4 C -0.14 -1.62 8.30 71.98 0.60 -1.02 16 5 N -0.53 -9.08 5.00 -836.18 -4.18 -13.26 16 6 C 0.04 0.62 5.11 86.77 0.44 1.07 16 7 C -0.12 -1.96 6.47 32.08 0.21 -1.75 16 8 C -0.10 -1.88 2.96 -9.51 -0.03 -1.90 16 9 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 10 C 0.16 4.47 4.97 86.38 0.43 4.90 16 11 N -0.73 -21.04 5.48 -478.54 -2.62 -23.66 16 12 C 0.66 27.41 8.52 179.06 1.53 28.93 16 13 O -0.52 -27.98 12.10 -3.97 -0.05 -28.03 16 14 N -0.66 -26.00 5.39 -322.12 -1.74 -27.74 16 15 C 0.36 18.01 7.43 133.26 0.99 19.00 16 16 C -0.35 -14.95 9.95 22.72 0.23 -14.72 16 17 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 18 C -0.33 -17.11 9.83 22.86 0.22 -16.89 16 19 C 0.24 13.97 6.55 40.19 0.26 14.24 16 20 C -0.47 -27.28 9.14 23.47 0.21 -27.07 16 21 H 0.09 4.65 7.85 -2.91 -0.02 4.63 16 22 C 0.01 0.48 5.50 85.29 0.47 0.95 16 23 N -0.68 -40.71 8.98 21.84 0.20 -40.52 16 24 Si 0.97 41.94 29.56 68.60 2.03 43.97 16 25 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 28 N -0.51 -29.89 5.74 -186.37 -1.07 -30.96 16 29 C 0.05 0.93 5.20 86.64 0.45 1.38 16 30 H 0.05 0.74 6.25 -2.39 -0.01 0.73 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.72 6.10 -2.39 -0.01 0.71 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.77 6.68 -2.39 -0.02 0.76 16 36 H 0.06 0.66 6.86 -2.39 -0.02 0.64 16 37 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.79 5.39 -2.39 -0.01 0.78 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.26 7.95 -2.39 -0.02 1.24 16 43 H 0.04 1.39 8.00 -2.39 -0.02 1.37 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.40 8.19 8.49 -92.71 -0.79 7.40 16 46 H 0.42 11.81 8.71 -92.71 -0.81 11.00 16 47 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 48 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 49 H 0.10 4.99 8.06 -2.91 -0.02 4.96 16 50 H 0.27 15.19 8.29 -92.71 -0.77 14.42 16 51 H 0.06 1.43 7.82 -2.39 -0.02 1.41 16 52 H 0.07 1.21 4.77 -2.39 -0.01 1.20 16 Total: -1.00 -76.91 401.21 -0.67 -77.58 By element: Atomic # 1 Polarization: 39.10 SS G_CDS: -0.65 Total: 38.45 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 7.42 Total: 4.16 kcal Atomic # 7 Polarization: -126.72 SS G_CDS: -9.41 Total: -136.12 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -76.91 -0.67 -77.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881141725.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.528 kcal (2) G-P(sol) polarization free energy of solvation -76.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds