Wall clock time and date at job start Wed Apr 1 2020 04:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47305 * 2 1 4 4 C 1.53003 * 109.46794 * 60.00144 * 3 2 1 5 5 C 1.53007 * 109.46947 * 300.00463 * 3 2 1 6 6 N 1.46891 * 109.47450 * 180.02562 * 3 2 1 7 7 C 1.46901 * 111.00115 * 179.97438 * 6 3 2 8 8 C 1.53247 * 109.33884 * 187.25166 * 7 6 3 9 9 N 1.47081 * 108.52344 * 306.17299 * 8 7 6 10 10 C 1.34776 * 120.87828 * 231.19161 * 9 8 7 11 11 O 1.21576 * 120.00083 * 5.87448 * 10 9 8 12 12 N 1.34776 * 119.99388 * 185.88518 * 10 9 8 13 13 C 1.39249 * 119.99590 * 185.49416 * 12 10 9 14 14 C 1.39687 * 119.57636 * 338.02987 * 13 12 10 15 15 C 1.38641 * 119.49525 * 180.02562 * 14 13 12 16 16 C 1.38344 * 118.67496 * 0.02562 * 15 14 13 17 17 C 1.40577 * 119.13035 * 359.97438 * 16 15 14 18 18 C 1.41338 * 119.78818 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99767 * 359.97438 * 18 17 16 20 20 C 1.40026 * 119.99853 * 179.97438 * 18 17 16 21 21 N 1.30750 * 120.00038 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99974 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46857 * 60.00629 * 22 20 18 24 24 H 1.48496 * 109.47018 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46847 * 300.00225 * 22 20 18 26 26 N 1.31906 * 119.57494 * 158.01193 * 13 12 10 27 27 C 1.47074 * 118.23577 * 51.45687 * 9 8 7 28 28 C 1.46900 * 111.00069 * 304.30238 * 6 3 2 29 29 H 1.08999 * 109.47122 * 300.00165 * 1 2 3 30 30 H 1.09003 * 109.47562 * 59.99723 * 1 2 3 31 31 H 1.09004 * 109.47463 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46957 * 240.00603 * 2 1 3 33 33 H 1.08994 * 109.47390 * 120.00408 * 2 1 3 34 34 H 1.09004 * 109.47023 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.47150 * 300.00011 * 4 3 2 36 36 H 1.08994 * 109.46936 * 60.00182 * 4 3 2 37 37 H 1.08996 * 109.46960 * 299.99229 * 5 3 2 38 38 H 1.08997 * 109.47050 * 59.99845 * 5 3 2 39 39 H 1.09004 * 109.46782 * 179.97438 * 5 3 2 40 40 H 1.09004 * 109.49191 * 67.29627 * 7 6 3 41 41 H 1.08996 * 109.49573 * 307.21213 * 7 6 3 42 42 H 1.09002 * 109.62582 * 186.46214 * 8 7 6 43 43 H 1.08996 * 109.62540 * 65.88269 * 8 7 6 44 44 H 0.96991 * 120.00593 * 5.48534 * 12 10 9 45 45 H 1.07999 * 120.25164 * 359.72757 * 14 13 12 46 46 H 1.08000 * 120.66308 * 179.97438 * 15 14 13 47 47 H 1.08000 * 120.44050 * 180.02562 * 16 15 14 48 48 H 0.96998 * 119.99509 * 179.97438 * 21 20 18 49 49 H 1.08995 * 109.63216 * 68.25123 * 27 9 8 50 50 H 1.09002 * 109.62787 * 188.83714 * 27 9 8 51 51 H 1.08996 * 109.49062 * 292.70479 * 28 6 3 52 52 H 1.09000 * 109.49220 * 52.76176 * 28 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1638 -1.2492 6 7 3.5089 1.4425 -0.0006 7 6 4.0353 2.8140 -0.0013 8 6 5.5563 2.7737 -0.1844 9 7 6.1273 1.8887 0.8423 10 6 7.1461 2.3013 1.6222 11 8 7.5348 3.4514 1.5565 12 7 7.7341 1.4388 2.4747 13 6 8.7082 1.8912 3.3611 14 6 9.3994 3.0724 3.0818 15 6 10.3693 3.5210 3.9652 16 6 10.6242 2.7783 5.1042 17 6 9.8946 1.5979 5.3290 18 6 10.1433 0.8287 6.4884 19 1 10.8922 1.1483 7.1980 20 6 9.4188 -0.3475 6.7170 21 7 8.5125 -0.7345 5.8577 22 14 9.7470 -1.3637 8.2497 23 1 9.4825 -0.5393 9.4562 24 1 8.8559 -2.5515 8.2562 25 1 11.1639 -1.8083 8.2547 26 7 8.9660 1.1988 4.4539 27 6 5.5608 0.5397 0.9914 28 6 4.0359 0.6695 1.1319 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8930 3.1915 1.2491 35 1 0.4400 2.1637 1.2493 36 1 1.8933 1.6498 2.1392 37 1 1.8932 1.6500 -2.1392 38 1 0.4399 2.1638 -1.2492 39 1 1.8929 3.1916 -1.2490 40 1 3.7958 3.2960 0.9467 41 1 3.5852 3.3760 -0.8195 42 1 5.9654 3.7776 -0.0712 43 1 5.7956 2.3872 -1.1751 44 1 7.4788 0.5031 2.4710 45 1 9.1834 3.6295 2.1821 46 1 10.9154 4.4315 3.7677 47 1 11.3733 3.1015 5.8119 48 1 8.0110 -1.5495 6.0159 49 1 5.8005 -0.0574 0.1116 50 1 5.9729 0.0659 1.8824 51 1 3.7963 1.1809 2.0642 52 1 3.5857 -0.3232 1.1355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143148.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:38 Heat of formation + Delta-G solvation = 20.388621 kcal Electronic energy + Delta-G solvation = -31336.959547 eV Core-core repulsion = 27336.715546 eV Total energy + Delta-G solvation = -4000.244001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.94991 -40.69222 -39.62037 -37.32662 -36.09871 -35.17197 -33.98016 -32.47378 -32.23264 -31.18532 -30.27090 -28.31278 -27.87961 -27.24754 -25.51752 -23.96959 -23.82359 -23.48301 -22.29222 -20.75516 -19.92212 -19.25046 -18.97219 -18.05562 -17.36476 -16.83701 -16.72791 -16.33549 -16.23373 -15.97142 -15.88035 -15.58376 -15.52335 -15.25545 -14.77736 -14.64407 -14.55463 -14.04348 -13.83285 -13.70629 -13.63489 -13.42781 -13.01390 -12.91564 -12.86827 -12.73811 -12.65353 -12.61338 -12.54939 -12.39916 -12.17682 -11.96406 -11.85856 -11.74664 -11.61524 -11.47082 -11.14255 -11.05131 -10.71173 -9.99723 -9.87838 -9.62681 -9.25970 -8.93600 -8.29581 -6.50043 0.82007 1.12595 1.42663 1.44217 1.54264 1.56988 2.06454 2.24760 2.74600 2.81618 2.89331 3.73519 3.76280 3.92328 3.95640 3.96468 4.16355 4.18598 4.22015 4.30401 4.35424 4.42402 4.48585 4.54913 4.62406 4.65013 4.68489 4.72913 4.78700 4.82893 4.87470 4.90583 4.94367 4.97459 5.01640 5.04889 5.10530 5.19071 5.21422 5.23938 5.27185 5.42208 5.49100 5.50763 5.61605 5.68750 5.78157 5.99296 6.04737 6.13963 6.19557 6.28819 6.71010 6.83038 6.98429 7.44380 8.10296 8.45815 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013148 B = 0.002709 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.131688 B =10335.168007 C =12027.335609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C 0.105 3.895 4 C -0.181 4.181 5 C -0.138 4.138 6 N -0.521 5.521 7 C 0.045 3.955 8 C 0.134 3.866 9 N -0.621 5.621 10 C 0.707 3.293 11 O -0.603 6.603 12 N -0.656 5.656 13 C 0.362 3.638 14 C -0.328 4.328 15 C -0.049 4.049 16 C -0.309 4.309 17 C 0.244 3.756 18 C -0.466 4.466 19 H 0.092 0.908 20 C 0.026 3.974 21 N -0.753 5.753 22 Si 0.988 3.012 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.259 1.259 26 N -0.533 5.533 27 C 0.111 3.889 28 C 0.043 3.957 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.023 0.977 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.409 0.591 45 H 0.139 0.861 46 H 0.130 0.870 47 H 0.114 0.886 48 H 0.279 0.721 49 H 0.097 0.903 50 H 0.077 0.923 51 H 0.023 0.977 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 -1.952 -13.375 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C 0.016 3.984 4 C -0.239 4.239 5 C -0.195 4.195 6 N -0.245 5.245 7 C -0.084 4.084 8 C 0.011 3.989 9 N -0.359 5.359 10 C 0.408 3.592 11 O -0.483 6.483 12 N -0.305 5.305 13 C 0.126 3.874 14 C -0.353 4.353 15 C -0.074 4.074 16 C -0.331 4.331 17 C 0.118 3.882 18 C -0.498 4.498 19 H 0.110 0.890 20 C -0.196 4.196 21 N -0.375 5.375 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.183 1.183 26 N -0.252 5.252 27 C -0.012 4.012 28 C -0.086 4.086 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.130 0.870 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.248 0.752 45 H 0.156 0.844 46 H 0.148 0.852 47 H 0.132 0.868 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.095 0.905 51 H 0.041 0.959 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.657 -2.286 -13.781 22.514 hybrid contribution 0.438 0.477 1.520 1.652 sum -17.218 -1.809 -12.261 21.215 Atomic orbital electron populations 1.21876 0.94628 1.02152 1.02302 1.21605 0.96489 0.94349 1.02416 1.21178 0.85522 0.96495 0.95176 1.22527 1.02761 1.00260 0.98391 1.21932 1.01446 0.99815 0.96326 1.62231 1.07563 1.12747 1.41939 1.22532 0.93935 0.90539 1.01384 1.21716 0.92404 0.94573 0.90181 1.47415 1.33837 1.17093 1.37542 1.15860 0.80328 0.83885 0.79079 1.90734 1.66814 1.18984 1.71772 1.42310 1.39668 1.12272 1.36237 1.18580 0.88375 0.91513 0.88971 1.22017 1.05063 1.02241 1.05941 1.21187 0.95110 0.97951 0.93141 1.21891 1.08486 1.00706 1.02045 1.18703 0.87461 0.90316 0.91724 1.19908 1.19079 1.06146 1.04620 0.89030 1.26958 0.93392 0.98418 1.00818 1.70197 1.14711 1.19128 1.33426 0.85176 0.79436 0.77319 0.77208 1.18617 1.19131 1.18343 1.68049 1.21212 1.33795 1.02188 1.22053 0.93461 0.82629 1.03033 1.22583 0.93819 1.00244 0.91931 0.92737 0.91560 0.92223 0.90897 0.92278 0.93335 0.90469 0.93854 0.91538 0.90750 0.92559 0.95867 0.87038 0.90141 0.89260 0.75213 0.84396 0.85212 0.86821 0.91039 0.88499 0.90496 0.95910 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.21 71.98 0.66 -0.90 16 2 C -0.11 -1.41 4.64 30.59 0.14 -1.27 16 3 C 0.11 1.52 0.48 3.53 0.00 1.52 16 4 C -0.18 -2.94 7.44 71.98 0.54 -2.40 16 5 C -0.14 -1.61 7.90 71.98 0.57 -1.04 16 6 N -0.52 -9.23 4.44 -844.81 -3.75 -12.99 16 7 C 0.04 0.88 4.77 86.39 0.41 1.29 16 8 C 0.13 3.22 6.61 86.35 0.57 3.79 16 9 N -0.62 -18.28 3.00 -835.07 -2.51 -20.78 16 10 C 0.71 28.27 8.21 179.05 1.47 29.74 16 11 O -0.60 -27.93 12.47 -3.95 -0.05 -27.98 16 12 N -0.66 -28.46 5.26 -322.12 -1.70 -30.16 16 13 C 0.36 19.01 7.50 133.26 1.00 20.01 16 14 C -0.33 -16.95 8.89 22.72 0.20 -16.75 16 15 C -0.05 -2.43 10.15 22.39 0.23 -2.20 16 16 C -0.31 -16.12 9.83 22.87 0.22 -15.89 16 17 C 0.24 14.04 6.55 40.19 0.26 14.31 16 18 C -0.47 -25.52 9.14 23.47 0.21 -25.31 16 19 H 0.09 4.67 7.85 -2.91 -0.02 4.64 16 20 C 0.03 1.32 5.50 85.29 0.47 1.79 16 21 N -0.75 -39.57 11.46 21.84 0.25 -39.32 16 22 Si 0.99 37.71 29.56 68.60 2.03 39.74 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 N -0.53 -30.43 7.89 -186.35 -1.47 -31.90 16 27 C 0.11 2.57 6.51 86.50 0.56 3.13 16 28 C 0.04 0.86 4.83 86.54 0.42 1.28 16 29 H 0.05 0.59 6.43 -2.39 -0.02 0.57 16 30 H 0.07 0.58 6.43 -2.39 -0.02 0.57 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 0.82 6.19 -2.39 -0.01 0.81 16 34 H 0.05 0.88 6.57 -2.38 -0.02 0.86 16 35 H 0.08 1.04 6.43 -2.39 -0.02 1.02 16 36 H 0.04 0.83 6.67 -2.39 -0.02 0.81 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.07 0.70 6.43 -2.39 -0.02 0.68 16 39 H 0.06 0.66 6.25 -2.38 -0.01 0.65 16 40 H 0.02 0.55 6.72 -2.38 -0.02 0.54 16 41 H 0.11 1.71 5.95 -2.39 -0.01 1.70 16 42 H 0.08 2.23 7.04 -2.39 -0.02 2.21 16 43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.41 16.07 6.49 -92.72 -0.60 15.46 16 45 H 0.14 7.13 5.19 -8.04 -0.04 7.09 16 46 H 0.13 5.37 8.06 -2.91 -0.02 5.35 16 47 H 0.11 5.40 8.06 -2.91 -0.02 5.38 16 48 H 0.28 13.14 8.29 -92.71 -0.77 12.37 16 49 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.08 1.94 5.87 -2.39 -0.01 1.92 16 51 H 0.02 0.56 6.80 -2.39 -0.02 0.54 16 52 H 0.11 1.80 5.83 -2.39 -0.01 1.79 16 Total: -1.00 -69.29 387.81 1.07 -68.22 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: 0.33 Total: 44.08 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 7.94 Total: 11.09 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -9.18 Total: -135.14 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Total: -69.29 1.07 -68.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143148.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.606 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds