Wall clock time and date at job start Wed Apr 1 2020 04:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47362 * 2 1 4 4 C 1.53003 * 109.47233 * 120.00059 * 2 1 3 5 5 N 1.46895 * 109.47087 * 174.99848 * 4 2 1 6 6 C 1.48537 * 111.00246 * 307.39611 * 5 4 2 7 7 C 1.55102 * 103.28388 * 200.33405 * 6 5 4 8 8 C 1.54589 * 102.84597 * 37.30354 * 7 6 5 9 9 H 1.09008 * 110.30945 * 97.12154 * 8 7 6 10 10 C 1.53002 * 110.30886 * 219.18555 * 8 7 6 11 11 N 1.46500 * 109.47056 * 292.21081 * 10 8 7 12 12 C 1.34780 * 120.00095 * 180.02562 * 11 10 8 13 13 O 1.21571 * 119.99712 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99776 * 179.97438 * 12 11 10 15 15 C 1.39245 * 119.99531 * 174.06087 * 14 12 11 16 16 C 1.39687 * 119.57907 * 341.28820 * 15 14 12 17 17 C 1.38649 * 119.49730 * 179.76841 * 16 15 14 18 18 C 1.38348 * 118.67005 * 0.49448 * 17 16 15 19 19 C 1.40575 * 119.13209 * 359.74857 * 18 17 16 20 20 C 1.41332 * 119.78914 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99927 * 6.35715 * 20 19 18 22 22 C 1.40023 * 119.99942 * 186.36438 * 20 19 18 23 23 N 1.30743 * 120.00460 * 353.67156 * 22 20 19 24 24 Si 1.86802 * 119.99928 * 173.67772 * 22 20 19 25 25 H 1.48506 * 109.47356 * 94.98196 * 24 22 20 26 26 H 1.48501 * 109.47216 * 214.98089 * 24 22 20 27 27 H 1.48501 * 109.47223 * 334.98310 * 24 22 20 28 28 N 1.31907 * 119.57469 * 161.55876 * 15 14 12 29 29 C 1.47905 * 111.00335 * 189.99816 * 5 4 2 30 30 H 1.09002 * 109.47174 * 299.99933 * 1 2 3 31 31 H 1.09001 * 109.47273 * 60.00324 * 1 2 3 32 32 H 1.09003 * 109.47119 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47174 * 240.00067 * 2 1 3 34 34 H 1.09010 * 109.46930 * 299.99964 * 3 2 1 35 35 H 1.09000 * 109.47377 * 59.99651 * 3 2 1 36 36 H 1.08994 * 109.47297 * 180.02562 * 3 2 1 37 37 H 1.08997 * 109.47151 * 54.99857 * 4 2 1 38 38 H 1.08995 * 109.47030 * 294.99582 * 4 2 1 39 39 H 1.09001 * 110.66366 * 318.71546 * 6 5 4 40 40 H 1.08997 * 110.66846 * 81.67982 * 6 5 4 41 41 H 1.09003 * 110.71021 * 278.99113 * 7 6 5 42 42 H 1.09005 * 110.80761 * 155.66349 * 7 6 5 43 43 H 1.09000 * 109.46941 * 172.21472 * 10 8 7 44 44 H 1.08994 * 109.47253 * 52.21235 * 10 8 7 45 45 H 0.97003 * 120.00431 * 0.02562 * 11 10 8 46 46 H 0.96994 * 120.00092 * 354.34249 * 14 12 11 47 47 H 1.08001 * 120.25109 * 0.02562 * 16 15 14 48 48 H 1.07995 * 120.66372 * 180.25088 * 17 16 15 49 49 H 1.08001 * 120.43348 * 179.77442 * 18 17 16 50 50 H 0.96995 * 120.00552 * 180.02562 * 23 22 20 51 51 H 1.09005 * 109.91103 * 26.49002 * 29 5 4 52 52 H 1.08998 * 110.08216 * 265.29173 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5040 -0.8267 1.1904 6 6 3.9430 -1.4316 -0.0933 7 6 5.3731 -1.9415 0.2237 8 6 5.2421 -2.4504 1.6776 9 1 5.0807 -3.5284 1.6880 10 6 6.4954 -2.0943 2.4797 11 7 7.6346 -2.8633 1.9727 12 6 8.8517 -2.7127 2.5317 13 8 9.0043 -1.9383 3.4564 14 7 9.8996 -3.4206 2.0655 15 6 11.1790 -3.1763 2.5578 16 6 11.4462 -1.9743 3.2174 17 6 12.7194 -1.7349 3.7111 18 6 13.6956 -2.6973 3.5244 19 6 13.3656 -3.8845 2.8478 20 6 14.3522 -4.8767 2.6489 21 1 15.3258 -4.7690 3.1036 22 6 14.0672 -5.9995 1.8621 23 7 12.8544 -6.1930 1.4139 24 14 15.4200 -7.2210 1.4531 25 1 15.3902 -8.3385 2.4307 26 1 15.2072 -7.7553 0.0840 27 1 16.7382 -6.5404 1.5195 28 7 12.1246 -4.0807 2.3906 29 6 4.0143 -1.7205 2.2526 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 3.1299 1.4424 -0.0005 37 1 1.6054 -1.7198 1.2952 38 1 1.7517 -0.1583 2.1369 39 1 3.2925 -2.2614 -0.3697 40 1 3.9653 -0.6819 -0.8841 41 1 6.0949 -1.1270 0.1637 42 1 5.6514 -2.7551 -0.4462 43 1 6.3343 -2.3339 3.5308 44 1 6.7018 -1.0290 2.3774 45 1 7.5130 -3.4810 1.2347 46 1 9.7631 -4.0974 1.3842 47 1 10.6657 -1.2388 3.3454 48 1 12.9457 -0.8138 4.2276 49 1 14.6979 -2.5388 3.8941 50 1 12.6569 -6.9709 0.8692 51 1 3.2475 -2.4443 2.5288 52 1 4.3048 -1.1362 3.1257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881150102.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:44 Heat of formation + Delta-G solvation = 9.413091 kcal Electronic energy + Delta-G solvation = -29618.527491 eV Core-core repulsion = 25617.807556 eV Total energy + Delta-G solvation = -4000.719936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.19109 -39.56372 -37.86056 -36.47277 -34.55497 -34.11318 -33.21291 -31.48058 -30.35466 -29.82204 -28.91963 -27.46103 -26.34003 -25.39764 -24.49456 -22.23745 -21.73558 -21.51452 -20.67350 -20.04279 -19.82960 -18.09667 -17.32311 -16.78454 -16.52549 -15.87585 -15.62593 -15.10898 -14.99512 -14.62390 -14.51256 -14.31274 -14.06175 -13.96874 -13.81513 -13.39877 -13.30236 -12.89250 -12.69972 -12.67283 -12.46215 -12.24268 -12.12240 -11.94350 -11.84960 -11.51256 -11.29856 -11.28960 -11.22174 -11.07982 -10.99740 -10.87284 -10.85117 -10.81915 -10.63740 -10.09946 -9.79479 -9.27506 -9.05493 -8.84121 -8.72501 -7.98695 -7.63872 -7.01588 -6.39347 -4.46652 2.71454 2.95815 3.00701 3.09908 3.13588 3.27937 3.63130 3.74961 3.96942 4.20344 4.29733 4.48259 4.50756 4.57878 4.68004 4.79605 4.81957 4.95674 5.05025 5.15647 5.17006 5.23492 5.27511 5.32527 5.37112 5.52242 5.53545 5.56080 5.61044 5.65746 5.74319 5.80315 5.86201 5.93976 5.94876 5.98957 6.06716 6.19980 6.47525 6.55113 6.57911 6.71273 6.76841 6.85965 6.98703 7.13691 7.27245 7.55743 7.66468 7.95102 8.11152 8.21050 8.47736 8.73786 8.93783 9.09176 10.09121 10.34070 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.001732 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.659132 B =16162.441464 C =16943.607458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.140 4.140 4 C 0.051 3.949 5 N -0.513 5.513 6 C 0.035 3.965 7 C -0.121 4.121 8 C -0.110 4.110 9 H 0.081 0.919 10 C 0.152 3.848 11 N -0.748 5.748 12 C 0.706 3.294 13 O -0.570 6.570 14 N -0.659 5.659 15 C 0.374 3.626 16 C -0.312 4.312 17 C -0.049 4.049 18 C -0.292 4.292 19 C 0.280 3.720 20 C -0.437 4.437 21 H 0.085 0.915 22 C 0.072 3.928 23 N -0.724 5.724 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.261 1.261 28 N -0.509 5.509 29 C 0.045 3.955 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.394 0.606 46 H 0.403 0.597 47 H 0.133 0.867 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.269 0.731 51 H 0.047 0.953 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.014 6.202 -5.902 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.197 4.197 4 C -0.077 4.077 5 N -0.237 5.237 6 C -0.093 4.093 7 C -0.159 4.159 8 C -0.130 4.130 9 H 0.100 0.900 10 C 0.027 3.973 11 N -0.405 5.405 12 C 0.406 3.594 13 O -0.446 6.446 14 N -0.306 5.306 15 C 0.139 3.861 16 C -0.337 4.337 17 C -0.074 4.074 18 C -0.314 4.314 19 C 0.154 3.846 20 C -0.469 4.469 21 H 0.103 0.897 22 C -0.152 4.152 23 N -0.346 5.346 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.185 1.185 28 N -0.228 5.228 29 C -0.084 4.084 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.227 0.773 46 H 0.238 0.762 47 H 0.151 0.849 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.080 0.920 51 H 0.066 0.934 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.032 6.546 -5.540 24.577 hybrid contribution 0.192 -1.401 -0.514 1.505 sum -22.840 5.145 -6.054 24.182 Atomic orbital electron populations 1.21825 0.95116 1.01583 1.01996 1.21208 0.95375 0.97387 0.97721 1.21748 1.02195 0.94782 1.01018 1.22395 0.87508 0.98929 0.98909 1.64794 1.10394 1.45905 1.02625 1.23265 0.95415 0.97611 0.93003 1.22650 0.96998 1.01195 0.95079 1.22254 0.94559 1.00428 0.95731 0.90018 1.21201 0.82743 0.96068 0.97248 1.45091 1.07681 1.48272 1.39439 1.15761 0.80018 0.81395 0.82210 1.90838 1.83066 1.40437 1.30290 1.42255 1.05311 1.40083 1.42975 1.18224 0.84307 0.90387 0.93224 1.21636 0.98487 0.99898 1.13639 1.20807 0.92961 0.97115 0.96517 1.21698 0.98973 0.98188 1.12589 1.18167 0.88302 0.90653 0.87499 1.19542 0.98529 1.02377 1.26463 0.89712 1.26026 0.95950 0.98335 0.94917 1.70124 1.19179 1.23363 1.21976 0.86342 0.81894 0.80407 0.78310 1.19610 1.20210 1.18499 1.68019 1.00556 1.27840 1.26345 1.22826 0.95318 0.94527 0.95718 0.92561 0.92476 0.92922 0.91129 0.93408 0.92917 0.91467 0.94814 0.90561 0.93900 0.89898 0.90014 0.90850 0.91674 0.91080 0.77258 0.76243 0.84942 0.88384 0.88288 0.91955 0.93449 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.19 37.16 0.34 -0.44 16 2 C -0.10 -0.61 2.60 -90.62 -0.24 -0.85 16 3 C -0.14 -0.94 9.08 37.16 0.34 -0.60 16 4 C 0.05 0.35 4.42 -3.83 -0.02 0.34 16 5 N -0.51 -4.11 4.85 -230.35 -1.12 -5.23 16 6 C 0.03 0.25 5.09 -1.81 -0.01 0.24 16 7 C -0.12 -0.94 6.36 -24.78 -0.16 -1.10 16 8 C -0.11 -0.90 3.04 -89.27 -0.27 -1.17 16 9 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 10 C 0.15 1.71 4.76 -4.04 -0.02 1.69 16 11 N -0.75 -9.80 5.41 -65.23 -0.35 -10.15 16 12 C 0.71 13.27 8.40 -86.91 -0.73 12.54 16 13 O -0.57 -12.75 13.14 5.30 0.07 -12.68 16 14 N -0.66 -13.53 5.42 -15.78 -0.09 -13.62 16 15 C 0.37 9.47 7.51 -154.99 -1.16 8.31 16 16 C -0.31 -7.84 8.83 -38.89 -0.34 -8.19 16 17 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 18 C -0.29 -7.47 9.83 -38.66 -0.38 -7.85 16 19 C 0.28 7.84 6.54 -85.00 -0.56 7.28 16 20 C -0.44 -11.79 9.13 -37.74 -0.34 -12.14 16 21 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 22 C 0.07 1.83 5.49 -17.35 -0.10 1.73 16 23 N -0.72 -18.91 11.49 55.55 0.64 -18.28 16 24 Si 0.91 18.57 29.56 -169.99 -5.03 13.54 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 28 N -0.51 -14.06 7.92 -10.26 -0.08 -14.15 16 29 C 0.04 0.35 6.36 -2.76 -0.02 0.34 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.45 6.51 -51.93 -0.34 0.12 16 34 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.53 7.75 -51.93 -0.40 0.13 16 37 H 0.03 0.23 7.81 -51.93 -0.41 -0.18 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.04 0.30 8.01 -51.93 -0.42 -0.12 16 40 H 0.08 0.60 7.55 -51.93 -0.39 0.20 16 41 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 45 H 0.39 4.10 8.38 -40.82 -0.34 3.75 16 46 H 0.40 7.35 8.84 -40.82 -0.36 6.98 16 47 H 0.13 3.32 5.33 -52.50 -0.28 3.04 16 48 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 49 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 50 H 0.27 6.35 8.29 -40.82 -0.34 6.01 16 51 H 0.05 0.34 7.57 -51.93 -0.39 -0.05 16 52 H 0.09 0.72 7.68 -51.93 -0.40 0.32 16 LS Contribution 412.70 15.07 6.22 6.22 Total: -1.00 -31.93 412.70 -12.55 -44.48 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -8.75 Total: 11.33 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -4.06 Total: -1.47 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -1.00 Total: -61.42 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.93 -12.55 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150102.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.889 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds