Wall clock time and date at job start Wed Apr 1 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 C 1.53000 * 109.46861 * 240.00076 * 2 1 3 5 5 N 1.46894 * 109.47571 * 120.00137 * 2 1 3 6 6 C 1.46200 * 111.00483 * 185.11740 * 5 2 1 7 7 C 1.51271 * 109.10694 * 144.77268 * 6 5 2 8 8 C 1.54166 * 109.77752 * 92.30574 * 7 6 5 9 9 N 1.47610 * 111.09332 * 320.24347 * 8 7 6 10 10 C 1.34782 * 118.74377 * 138.19912 * 9 8 7 11 11 O 1.21576 * 120.00242 * 4.90269 * 10 9 8 12 12 N 1.34782 * 119.99517 * 184.89719 * 10 9 8 13 13 C 1.39245 * 119.99386 * 185.31516 * 12 10 9 14 14 C 1.39692 * 119.57200 * 174.61666 * 13 12 10 15 15 C 1.38650 * 119.49346 * 179.97438 * 14 13 12 16 16 C 1.38348 * 118.67167 * 359.97438 * 15 14 13 17 17 C 1.40575 * 119.13519 * 0.02562 * 16 15 14 18 18 C 1.41326 * 119.79239 * 180.25350 * 17 16 15 19 19 H 1.08001 * 119.99593 * 359.72544 * 18 17 16 20 20 C 1.40030 * 120.00262 * 179.72597 * 18 17 16 21 21 N 1.30735 * 119.99767 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99891 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46766 * 90.00132 * 22 20 18 24 24 H 1.48500 * 109.46942 * 209.99845 * 22 20 18 25 25 H 1.48498 * 109.47196 * 330.00428 * 22 20 18 26 26 N 1.31905 * 119.58037 * 354.62999 * 13 12 10 27 27 C 1.44885 * 122.50916 * 317.91917 * 9 8 7 28 28 C 1.41446 * 111.00079 * 54.07510 * 5 2 1 29 29 H 1.09006 * 109.47101 * 292.02391 * 1 2 3 30 30 H 1.08999 * 109.47544 * 52.02773 * 1 2 3 31 31 H 1.09004 * 109.46706 * 172.03064 * 1 2 3 32 32 H 1.09002 * 109.47098 * 190.21116 * 3 2 1 33 33 H 1.09005 * 109.47021 * 310.20427 * 3 2 1 34 34 H 1.09001 * 109.47480 * 70.20703 * 3 2 1 35 35 H 1.08994 * 109.47458 * 299.99380 * 4 2 1 36 36 H 1.09001 * 109.46878 * 60.00132 * 4 2 1 37 37 H 1.09001 * 109.46921 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.52690 * 264.66395 * 6 5 2 39 39 H 1.08997 * 109.52903 * 24.87954 * 6 5 2 40 40 H 1.08996 * 109.44059 * 212.45747 * 7 6 5 41 41 H 1.09006 * 109.44142 * 332.38765 * 7 6 5 42 42 H 1.09006 * 109.31295 * 199.77615 * 8 7 6 43 43 H 1.09003 * 109.12536 * 80.59044 * 8 7 6 44 44 H 0.96993 * 120.00060 * 5.31876 * 12 10 9 45 45 H 1.07999 * 120.25024 * 359.97140 * 14 13 12 46 46 H 1.07998 * 120.65936 * 179.97438 * 15 14 13 47 47 H 1.07997 * 120.43605 * 180.02562 * 16 15 14 48 48 H 0.97004 * 120.00206 * 179.97438 * 21 20 18 49 49 H 1.08997 * 109.43637 * 210.06868 * 27 9 8 50 50 H 1.09000 * 109.43517 * 329.94389 * 27 9 8 51 51 H 1.09004 * 109.38250 * 71.53156 * 28 5 2 52 52 H 1.08993 * 109.29994 * 311.79342 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1993 6 6 3.4761 -0.6075 1.2956 7 6 3.8704 -0.4954 2.7517 8 6 4.1410 -1.8993 3.3283 9 7 3.1615 -2.8800 2.8208 10 6 3.5968 -4.1033 2.4593 11 8 4.7591 -4.4121 2.6371 12 7 2.7433 -4.9843 1.9007 13 6 3.1633 -6.2838 1.6290 14 6 2.2421 -7.2212 1.1556 15 6 2.6622 -8.5146 0.8850 16 6 3.9910 -8.8382 1.0936 17 6 4.8692 -7.8501 1.5716 18 6 6.2306 -8.1640 1.7845 19 1 6.5924 -9.1618 1.5843 20 6 7.1105 -7.1816 2.2551 21 7 6.6724 -5.9740 2.4980 22 14 8.9098 -7.5968 2.5372 23 1 9.6786 -7.3369 1.2935 24 1 9.4460 -6.7539 3.6359 25 1 9.0352 -9.0298 2.9062 26 7 4.4257 -6.6139 1.8221 27 6 1.7491 -2.5797 2.7019 28 6 1.4583 -1.9867 1.3022 29 1 -0.3633 0.3854 0.9527 30 1 -0.3634 0.6323 -0.8101 31 1 -0.3633 -1.0178 -0.1425 32 1 3.1146 1.4480 -0.1822 33 1 1.5356 2.0062 -0.7849 34 1 1.8330 1.9011 0.9669 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7209 -1.2495 38 1 3.9226 -1.5037 0.8649 39 1 3.8263 0.2715 0.7544 40 1 4.7711 0.1123 2.8379 41 1 3.0613 -0.0264 3.3116 42 1 4.0769 -1.8609 4.4158 43 1 5.1441 -2.2158 3.0420 44 1 1.8367 -4.7131 1.6880 45 1 1.2107 -6.9407 1.0016 46 1 1.9660 -9.2545 0.5188 47 1 4.3491 -9.8369 0.8919 48 1 7.2818 -5.2934 2.8243 49 1 1.1713 -3.4943 2.8355 50 1 1.4661 -1.8575 3.4678 51 1 1.8934 -2.6315 0.5386 52 1 0.3805 -1.9247 1.1523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881152604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:16 Heat of formation + Delta-G solvation = 57.316730 kcal Electronic energy + Delta-G solvation = -32542.746898 eV Core-core repulsion = 28544.104220 eV Total energy + Delta-G solvation = -3998.642678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.51249 -39.15368 -37.75091 -35.65989 -34.19768 -33.25879 -32.59666 -32.18750 -30.23907 -29.02593 -28.10287 -27.49538 -27.01869 -25.66108 -25.15043 -22.70648 -21.79188 -21.27154 -20.53134 -19.08422 -18.74067 -17.91496 -16.96421 -16.40614 -16.36113 -15.37497 -15.27397 -14.97855 -14.57141 -14.38790 -14.27662 -14.17836 -13.80343 -13.58124 -13.41232 -13.03586 -12.81021 -12.73901 -12.70108 -12.20165 -12.10485 -12.01578 -11.95947 -11.85820 -11.70092 -11.61416 -11.20437 -11.11851 -11.09284 -10.91095 -10.80624 -10.60563 -10.60222 -10.44038 -10.39451 -9.88176 -9.63188 -8.99503 -8.97210 -8.21085 -8.02833 -7.89633 -7.15432 -6.88679 -6.06153 -4.34451 2.88497 3.16648 3.20304 3.22783 3.24100 3.31281 3.75488 4.10743 4.22196 4.48693 4.61080 4.72635 4.83793 4.98279 5.00743 5.06650 5.15569 5.24890 5.31617 5.39664 5.42196 5.51624 5.55053 5.57482 5.67190 5.68554 5.74676 5.78127 5.85857 5.92161 5.99390 6.03920 6.08047 6.10246 6.12730 6.18408 6.22975 6.32065 6.52364 6.65103 6.84724 6.89651 7.05922 7.18829 7.26662 7.37622 7.45241 7.66697 7.78538 7.86084 8.21677 8.33435 8.68898 8.84301 9.11259 9.64337 10.32515 10.54635 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013482 B = 0.003422 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.326326 B = 8179.568012 C = 9315.173416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.108 3.892 3 C -0.140 4.140 4 C -0.179 4.179 5 N -0.545 5.545 6 C 0.068 3.932 7 C -0.128 4.128 8 C 0.136 3.864 9 N -0.634 5.634 10 C 0.663 3.337 11 O -0.461 6.461 12 N -0.673 5.673 13 C 0.386 3.614 14 C -0.359 4.359 15 C -0.035 4.035 16 C -0.308 4.308 17 C 0.271 3.729 18 C -0.426 4.426 19 H 0.081 0.919 20 C 0.057 3.943 21 N -0.648 5.648 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.264 1.264 26 N -0.471 5.471 27 C 0.116 3.884 28 C 0.045 3.955 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.393 0.607 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.271 0.729 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.030 0.970 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 15.977 -1.985 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.019 3.981 3 C -0.197 4.197 4 C -0.238 4.238 5 N -0.270 5.270 6 C -0.059 4.059 7 C -0.166 4.166 8 C 0.012 3.988 9 N -0.376 5.376 10 C 0.362 3.638 11 O -0.325 6.325 12 N -0.322 5.322 13 C 0.146 3.854 14 C -0.386 4.386 15 C -0.060 4.060 16 C -0.331 4.331 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.099 0.901 20 C -0.173 4.173 21 N -0.266 5.266 22 Si 0.718 3.282 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.189 5.189 27 C -0.009 4.009 28 C -0.086 4.086 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.228 0.772 45 H 0.107 0.893 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.099 0.901 51 H 0.048 0.952 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.815 16.820 -1.014 19.017 hybrid contribution -0.218 -1.110 -1.044 1.540 sum -9.034 15.710 -2.058 18.239 Atomic orbital electron populations 1.21950 0.93946 1.01778 1.02192 1.21003 0.95075 0.94025 0.87993 1.21951 1.00746 0.94801 1.02208 1.22491 1.01578 1.01113 0.98601 1.58615 1.10411 1.19379 1.38593 1.21578 0.86300 1.01226 0.96822 1.21925 1.01585 0.96731 0.96409 1.21606 0.93353 0.86849 0.96949 1.47206 1.06968 1.13015 1.70417 1.16499 0.86277 0.80418 0.80598 1.91365 1.13300 1.73860 1.54014 1.42775 1.14709 1.10435 1.64323 1.18382 0.91595 0.82646 0.92727 1.20430 0.97996 0.95604 1.24521 1.20530 0.95071 0.94389 0.95976 1.21612 0.94563 1.00230 1.16698 1.18393 0.93187 0.85991 0.87810 1.19565 0.91811 0.97380 1.36869 0.90056 1.26186 1.00043 0.95269 0.95770 1.70351 1.34184 1.00511 1.21563 0.86555 0.83525 0.79544 0.78545 1.19747 1.20360 1.18814 1.68711 1.09555 1.18549 1.22123 1.21494 0.82800 1.00011 0.96622 1.21956 0.99781 0.89292 0.97553 0.91658 0.92402 0.92474 0.92548 0.92440 0.91652 0.92390 0.92341 0.92578 0.93664 0.90900 0.90924 0.90764 0.92903 0.89369 0.77188 0.89318 0.88706 0.88659 0.91701 0.90939 0.90132 0.95161 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 7.76 37.16 0.29 -0.82 16 2 C 0.11 0.99 0.70 -131.60 -0.09 0.89 16 3 C -0.14 -1.12 7.98 37.16 0.30 -0.82 16 4 C -0.18 -1.81 7.99 37.16 0.30 -1.51 16 5 N -0.55 -5.70 3.68 -223.79 -0.82 -6.52 16 6 C 0.07 0.79 3.93 -5.08 -0.02 0.77 16 7 C -0.13 -1.40 5.79 -26.99 -0.16 -1.56 16 8 C 0.14 1.94 6.15 -2.82 -0.02 1.93 16 9 N -0.63 -10.03 2.17 -177.95 -0.39 -10.42 16 10 C 0.66 14.04 8.17 -86.91 -0.71 13.33 16 11 O -0.46 -12.01 11.44 5.30 0.06 -11.95 16 12 N -0.67 -13.89 5.14 -15.78 -0.08 -13.97 16 13 C 0.39 9.70 7.43 -154.99 -1.15 8.54 16 14 C -0.36 -8.28 9.96 -38.89 -0.39 -8.66 16 15 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 16 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 17 C 0.27 7.79 6.55 -85.00 -0.56 7.23 16 18 C -0.43 -11.95 9.14 -37.74 -0.34 -12.30 16 19 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 20 C 0.06 1.53 5.50 -17.35 -0.10 1.43 16 21 N -0.65 -18.31 8.99 55.55 0.50 -17.82 16 22 Si 0.89 19.62 29.56 -169.99 -5.02 14.59 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 26 N -0.47 -13.54 5.74 -10.26 -0.06 -13.60 16 27 C 0.12 1.41 5.16 -3.97 -0.02 1.39 16 28 C 0.04 0.50 4.48 -5.74 -0.03 0.47 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.06 0.46 6.57 -51.93 -0.34 0.11 16 32 H 0.06 0.47 6.27 -51.93 -0.33 0.14 16 33 H 0.06 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 6.80 -51.93 -0.35 0.30 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.63 7.33 -51.93 -0.38 0.25 16 38 H 0.05 0.68 7.33 -51.93 -0.38 0.30 16 39 H 0.07 0.76 5.25 -51.93 -0.27 0.49 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.78 7.98 -51.93 -0.41 0.36 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.51 7.05 -51.93 -0.37 1.14 16 44 H 0.39 6.55 6.36 -40.82 -0.26 6.29 16 45 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 47 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 48 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 49 H 0.07 0.85 6.52 -51.93 -0.34 0.52 16 50 H 0.08 0.89 8.11 -51.93 -0.42 0.47 16 51 H 0.03 0.41 6.86 -51.93 -0.36 0.06 16 52 H 0.08 0.79 5.60 -51.93 -0.29 0.50 16 LS Contribution 389.85 15.07 5.88 5.88 Total: -1.00 -32.75 389.85 -11.68 -44.43 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.27 Total: 8.60 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.47 Total: 0.77 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -0.85 Total: -62.32 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.95 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.75 -11.68 -44.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881152604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.748 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds