Wall clock time and date at job start Wed Apr 1 2020 04:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47242 * 2 1 4 4 C 1.52997 * 109.47424 * 65.00021 * 3 2 1 5 5 C 1.52999 * 109.47494 * 185.00243 * 4 3 2 6 6 N 1.46497 * 109.47322 * 185.00233 * 3 2 1 7 7 N 1.28472 * 124.88006 * 300.33408 * 6 3 2 8 8 C 1.31808 * 110.07103 * 180.15822 * 7 6 3 9 9 C 1.47711 * 126.52003 * 179.82027 * 8 7 6 10 10 O 1.21565 * 120.00473 * 179.69256 * 9 8 7 11 11 N 1.34776 * 119.99837 * 359.69162 * 9 8 7 12 12 C 1.46498 * 120.00276 * 179.97438 * 11 9 8 13 13 H 1.09002 * 115.49181 * 9.62350 * 12 11 9 14 14 C 1.52996 * 117.44639 * 224.24161 * 12 11 9 15 15 H 1.08999 * 120.26274 * 3.83085 * 14 12 11 16 16 C 1.54391 * 118.11993 * 160.80914 * 14 12 11 17 17 N 1.48153 * 104.61752 * 87.19406 * 16 14 12 18 18 C 1.36933 * 127.83596 * 140.41095 * 17 16 14 19 19 H 1.07998 * 119.99735 * 195.56946 * 18 17 16 20 20 C 1.38810 * 120.00233 * 15.57675 * 18 17 16 21 21 N 1.31610 * 120.00117 * 9.09134 * 20 18 17 22 22 Si 1.86807 * 119.99871 * 189.09663 * 20 18 17 23 23 H 1.48495 * 109.47257 * 89.99750 * 22 20 18 24 24 H 1.48502 * 109.46996 * 209.99879 * 22 20 18 25 25 H 1.48505 * 109.47103 * 329.99633 * 22 20 18 26 26 C 1.48147 * 104.32094 * 320.41191 * 17 16 14 27 27 C 1.52999 * 117.44604 * 154.99914 * 12 11 9 28 28 H 1.09005 * 120.26238 * 356.17904 * 27 12 11 29 29 C 1.41508 * 106.96643 * 359.56217 * 8 7 6 30 30 C 1.35035 * 124.89037 * 120.00176 * 6 3 2 31 31 C 1.50703 * 126.38153 * 0.03821 * 30 6 3 32 32 H 1.08994 * 109.47203 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47562 * 300.00597 * 1 2 3 34 34 H 1.09004 * 109.47174 * 59.99871 * 1 2 3 35 35 H 1.09001 * 109.47232 * 240.00286 * 2 1 3 36 36 H 1.08999 * 109.46835 * 119.99806 * 2 1 3 37 37 H 1.09011 * 109.47337 * 304.99840 * 3 2 1 38 38 H 1.09005 * 109.47037 * 305.00432 * 4 3 2 39 39 H 1.09002 * 109.47224 * 64.99528 * 4 3 2 40 40 H 1.08998 * 109.47047 * 59.99705 * 5 4 3 41 41 H 1.08999 * 109.47008 * 179.97438 * 5 4 3 42 42 H 1.08998 * 109.46770 * 299.99967 * 5 4 3 43 43 H 0.97002 * 119.99902 * 359.97438 * 11 9 8 44 44 H 1.08996 * 110.41326 * 328.40725 * 16 14 12 45 45 H 1.09005 * 110.40679 * 205.97385 * 16 14 12 46 46 H 0.97003 * 120.00069 * 180.02562 * 21 20 18 47 47 H 1.08997 * 110.40325 * 158.36698 * 26 17 16 48 48 H 1.08998 * 110.40477 * 280.79721 * 26 17 16 49 49 H 1.07993 * 127.25091 * 180.25497 * 29 8 7 50 50 H 1.09003 * 109.47237 * 270.00167 * 31 30 6 51 51 H 1.09002 * 109.47357 * 30.00338 * 31 30 6 52 52 H 1.09000 * 109.46984 * 150.00728 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1266 1.3073 5 6 2.0354 3.6024 1.2558 6 7 3.5000 1.4442 -0.1204 7 7 4.3064 0.8866 0.7099 8 6 5.5528 1.0696 0.3222 9 6 6.7673 0.5860 1.0100 10 8 7.8646 0.8193 0.5418 11 7 6.6588 -0.1138 2.1567 12 6 7.8632 -0.5939 2.8386 13 1 8.8066 -0.2096 2.4508 14 6 7.8502 -2.0303 3.3653 15 1 6.9941 -2.6775 3.1747 16 6 9.2045 -2.7061 3.6697 17 7 9.5102 -2.3185 5.0665 18 6 10.0635 -3.0927 6.0512 19 1 10.0050 -2.7778 7.0826 20 6 10.6997 -4.2821 5.7236 21 7 10.9299 -4.5797 4.4624 22 14 11.2291 -5.4605 7.0730 23 1 10.1281 -6.4160 7.3557 24 1 12.4333 -6.2093 6.6320 25 1 11.5468 -4.6930 8.3040 26 6 9.0813 -0.9033 5.1563 27 6 7.7690 -0.8416 4.3455 28 1 6.8524 -0.6034 4.8851 29 6 5.5061 1.8122 -0.8815 30 6 4.1916 2.0267 -1.1234 31 6 3.6086 2.7760 -2.2937 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.6054 1.9816 -0.8419 38 1 0.5563 2.0470 1.4401 39 1 2.1408 1.6419 2.1426 40 1 1.5299 4.0870 0.4205 41 1 1.7466 4.0898 2.1870 42 1 3.1143 3.6819 1.1230 43 1 5.7832 -0.2996 2.5305 44 1 9.9753 -2.3340 2.9947 45 1 9.1160 -3.7893 3.5866 46 1 11.3742 -5.4111 4.2336 47 1 8.8998 -0.6264 6.1948 48 1 9.8328 -0.2496 4.7136 49 1 6.3429 2.1391 -1.4807 50 1 3.4242 2.0823 -3.1140 51 1 2.6702 3.2433 -1.9950 52 1 4.3099 3.5446 -2.6188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960702521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:59 Heat of formation + Delta-G solvation = 68.045916 kcal Electronic energy + Delta-G solvation = -30252.947976 eV Core-core repulsion = 26254.770551 eV Total energy + Delta-G solvation = -3998.177426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.79515 -41.06231 -39.72757 -37.86155 -36.12257 -34.47996 -33.64225 -32.83873 -32.55721 -31.92543 -28.95629 -28.02237 -27.97902 -27.21734 -25.17294 -23.80851 -23.29196 -22.11054 -21.95602 -21.70085 -20.91277 -20.19371 -18.88168 -18.36578 -17.61818 -17.49901 -17.23888 -16.73503 -15.92540 -15.83507 -15.69764 -15.41415 -15.19810 -14.97865 -14.87514 -14.65899 -14.53213 -14.06559 -13.81363 -13.73687 -13.58608 -13.37772 -13.24983 -13.19343 -12.98730 -12.92085 -12.78934 -12.71620 -12.48544 -12.17002 -12.05761 -12.04334 -11.92808 -11.90504 -11.71122 -11.69210 -11.54302 -11.36911 -10.84030 -10.74229 -10.14801 -9.87250 -9.72738 -8.94228 -7.92016 -5.29725 0.47989 1.11177 1.43110 1.46427 1.48983 1.57936 1.92998 2.23756 2.48174 2.83973 3.17804 3.28425 3.54090 3.60895 3.69213 3.73655 3.81392 3.89018 3.93898 3.99066 4.10025 4.23588 4.33946 4.36693 4.40423 4.42216 4.48392 4.54082 4.63036 4.69629 4.76997 4.78714 4.83129 4.86560 4.97162 4.98585 5.02528 5.06365 5.10540 5.12965 5.19528 5.24599 5.29834 5.34588 5.39650 5.42007 5.43852 5.50550 5.62000 5.92438 6.14970 6.37354 6.90974 6.98548 7.10316 7.65885 8.44690 9.22090 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017595 B = 0.002027 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.949725 B =13809.557139 C =14394.002991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.141 3.859 4 C -0.133 4.133 5 C -0.153 4.153 6 N -0.261 5.261 7 N -0.261 5.261 8 C -0.042 4.042 9 C 0.605 3.395 10 O -0.572 6.572 11 N -0.673 5.673 12 C 0.119 3.881 13 H 0.111 0.889 14 C -0.186 4.186 15 H 0.118 0.882 16 C 0.191 3.809 17 N -0.616 5.616 18 C -0.241 4.241 19 H 0.086 0.914 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.985 3.015 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.265 1.265 26 C 0.149 3.851 27 C -0.158 4.158 28 H 0.138 0.862 29 C -0.204 4.204 30 C 0.023 3.977 31 C -0.084 4.084 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.028 0.972 43 H 0.416 0.584 44 H -0.004 1.004 45 H 0.058 0.942 46 H 0.250 0.750 47 H 0.069 0.931 48 H 0.022 0.978 49 H 0.158 0.842 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.966 17.541 -13.464 36.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C 0.042 3.958 4 C -0.171 4.171 5 C -0.210 4.210 6 N -0.050 5.050 7 N -0.098 5.098 8 C -0.201 4.201 9 C 0.392 3.608 10 O -0.450 6.450 11 N -0.322 5.322 12 C 0.012 3.988 13 H 0.129 0.871 14 C -0.207 4.207 15 H 0.136 0.864 16 C 0.064 3.936 17 N -0.340 5.340 18 C -0.369 4.369 19 H 0.103 0.897 20 C -0.259 4.259 21 N -0.597 5.597 22 Si 0.812 3.188 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.024 3.976 27 C -0.179 4.179 28 H 0.155 0.845 29 C -0.232 4.232 30 C -0.102 4.102 31 C -0.142 4.142 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.157 0.843 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.047 0.953 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.040 0.960 49 H 0.176 0.824 50 H 0.111 0.889 51 H 0.111 0.889 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -28.808 17.019 -12.855 35.844 hybrid contribution 1.262 -0.840 0.185 1.527 sum -27.546 16.179 -12.669 34.367 Atomic orbital electron populations 1.21789 0.92049 1.03091 1.03504 1.21831 0.98466 0.93858 1.02744 1.22215 0.71769 0.99392 1.02385 1.21988 1.03829 0.95842 0.95415 1.21779 1.00300 0.95702 1.03255 1.45985 1.08004 1.35832 1.15222 1.73364 0.99831 1.17872 1.18763 1.21545 0.90739 1.08203 0.99575 1.17251 0.86986 0.76861 0.79749 1.90766 1.28250 1.59268 1.66694 1.45029 1.09198 1.54166 1.23773 1.21438 0.89385 0.95811 0.92199 0.87122 1.24407 1.00921 0.90604 1.04811 0.86369 1.20768 0.89699 0.98294 0.84798 1.45490 1.71813 1.07740 1.08997 1.19424 1.28070 1.01530 0.87884 0.89675 1.25822 0.99934 1.01388 0.98754 1.70114 1.47171 1.24984 1.17474 0.84995 0.76953 0.78536 0.78322 1.21043 1.22181 1.18960 1.21274 0.92190 0.85912 0.98251 1.24234 1.00983 1.02707 0.89960 0.84473 1.21664 0.97332 1.05880 0.98347 1.21903 0.90974 1.02101 0.95173 1.20556 1.02232 0.99514 0.91865 0.91993 0.91004 0.90694 0.92040 0.92046 0.84304 0.86817 0.92209 0.90407 0.91805 0.95289 0.74682 0.98593 0.92348 0.94094 0.91306 0.96014 0.82439 0.88895 0.88852 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.67 71.98 0.70 0.02 16 2 C -0.13 -1.29 5.57 30.59 0.17 -1.12 16 3 C 0.14 1.31 2.41 44.99 0.11 1.42 16 4 C -0.13 -1.17 5.35 30.59 0.16 -1.00 16 5 C -0.15 -1.44 9.80 71.98 0.71 -0.73 16 6 N -0.26 -4.44 2.49 -314.20 -0.78 -5.23 16 7 N -0.26 -6.24 11.25 -48.17 -0.54 -6.78 16 8 C -0.04 -1.22 7.13 42.46 0.30 -0.92 16 9 C 0.60 21.03 7.82 86.75 0.68 21.71 16 10 O -0.57 -24.11 16.49 -3.92 -0.06 -24.17 16 11 N -0.67 -21.47 5.56 -445.55 -2.48 -23.95 16 12 C 0.12 4.40 5.98 44.99 0.27 4.67 16 13 H 0.11 4.71 7.40 -2.39 -0.02 4.69 16 14 C -0.19 -7.60 7.06 -9.89 -0.07 -7.67 16 15 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 16 C 0.19 10.02 5.70 86.53 0.49 10.52 16 17 N -0.62 -33.23 3.38 -688.14 -2.33 -35.56 16 18 C -0.24 -13.83 10.35 84.03 0.87 -12.96 16 19 H 0.09 4.62 7.84 -2.91 -0.02 4.60 16 20 C -0.07 -3.82 5.40 84.86 0.46 -3.36 16 21 N -0.95 -59.09 10.86 21.65 0.24 -58.86 16 22 Si 0.98 46.44 29.56 68.60 2.03 48.47 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C 0.15 6.49 7.04 86.53 0.61 7.10 16 27 C -0.16 -5.76 7.05 -9.89 -0.07 -5.83 16 28 H 0.14 4.14 8.14 -2.38 -0.02 4.13 16 29 C -0.20 -4.93 10.73 22.41 0.24 -4.69 16 30 C 0.02 0.38 6.92 41.40 0.29 0.67 16 31 C -0.08 -0.55 9.92 71.24 0.71 0.15 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.22 6.46 -2.39 -0.02 0.20 16 34 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.14 0.44 6.55 -2.38 -0.02 0.42 16 38 H 0.11 0.42 6.34 -2.38 -0.02 0.41 16 39 H 0.06 0.82 8.05 -2.39 -0.02 0.80 16 40 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.03 0.43 7.75 -2.39 -0.02 0.41 16 43 H 0.42 11.27 8.55 -92.71 -0.79 10.48 16 44 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.06 3.42 6.51 -2.38 -0.02 3.41 16 46 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 48 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 50 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.09 0.18 7.03 -2.39 -0.02 0.16 16 52 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -78.28 419.54 2.81 -75.46 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.12 Total: 22.63 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.62 Total: 7.99 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -5.89 Total: -130.38 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.06 Total: -24.17 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -78.28 2.81 -75.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960702521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.507 kcal (2) G-P(sol) polarization free energy of solvation -78.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds