Wall clock time and date at job start Wed Apr 1 2020 03:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47285 * 2 1 4 4 C 1.52996 * 109.47199 * 64.99648 * 3 2 1 5 5 C 1.53002 * 109.46963 * 185.00028 * 4 3 2 6 6 N 1.46502 * 109.47031 * 184.99836 * 3 2 1 7 7 N 1.28447 * 125.19037 * 304.83442 * 6 3 2 8 8 C 1.30865 * 110.92106 * 180.27922 * 7 6 3 9 9 C 1.50707 * 126.06748 * 179.74580 * 8 7 6 10 10 C 1.39669 * 107.86360 * 359.71710 * 8 7 6 11 11 C 1.36601 * 125.18818 * 124.62078 * 6 3 2 12 12 C 1.47167 * 126.88408 * 0.02562 * 11 6 3 13 13 O 1.21634 * 119.99747 * 354.12310 * 12 11 6 14 14 N 1.34777 * 119.99813 * 174.12808 * 12 11 6 15 15 C 1.46497 * 119.99628 * 184.73983 * 14 12 11 16 16 H 1.08998 * 115.51814 * 350.58123 * 15 14 12 17 17 C 1.53003 * 117.44147 * 205.16680 * 15 14 12 18 18 H 1.09000 * 119.53669 * 5.75813 * 17 15 14 19 19 C 1.54389 * 118.12526 * 160.85169 * 17 15 14 20 20 N 1.48154 * 104.61400 * 87.18981 * 19 17 15 21 21 C 1.36935 * 127.83375 * 140.41871 * 20 19 17 22 22 H 1.08001 * 119.99963 * 196.14879 * 21 20 19 23 23 C 1.38811 * 120.00359 * 16.15227 * 21 20 19 24 24 N 1.31621 * 119.99522 * 8.70387 * 23 21 20 25 25 Si 1.86793 * 120.00243 * 188.70870 * 23 21 20 26 26 H 1.48507 * 109.47018 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47346 * 119.99457 * 25 23 21 28 28 H 1.48503 * 109.47220 * 240.00162 * 25 23 21 29 29 C 1.48146 * 104.32611 * 320.41640 * 20 19 17 30 30 C 1.53002 * 117.40722 * 135.94015 * 15 14 12 31 31 H 1.09000 * 119.53619 * 355.89531 * 30 15 14 32 32 H 1.09000 * 109.47148 * 59.99941 * 1 2 3 33 33 H 1.08997 * 109.47547 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47302 * 300.00065 * 1 2 3 35 35 H 1.08994 * 109.47212 * 239.99476 * 2 1 3 36 36 H 1.09006 * 109.47137 * 119.99631 * 2 1 3 37 37 H 1.08998 * 109.46913 * 304.99941 * 3 2 1 38 38 H 1.09002 * 109.47300 * 305.00365 * 4 3 2 39 39 H 1.09007 * 109.47277 * 65.00189 * 4 3 2 40 40 H 1.08994 * 109.47120 * 300.00124 * 5 4 3 41 41 H 1.08999 * 109.46934 * 60.00622 * 5 4 3 42 42 H 1.09008 * 109.46697 * 180.02562 * 5 4 3 43 43 H 1.09004 * 109.46941 * 269.96192 * 9 8 7 44 44 H 1.09003 * 109.46793 * 29.95814 * 9 8 7 45 45 H 1.08990 * 109.46810 * 149.95743 * 9 8 7 46 46 H 1.08004 * 127.31676 * 180.02562 * 10 8 7 47 47 H 0.96996 * 119.99809 * 4.73685 * 14 12 11 48 48 H 1.08997 * 110.41127 * 205.97596 * 19 17 15 49 49 H 1.08998 * 110.40551 * 328.41364 * 19 17 15 50 50 H 0.97003 * 119.99337 * 180.02562 * 24 23 21 51 51 H 1.08996 * 110.40745 * 158.36949 * 29 20 19 52 52 H 1.09000 * 110.40670 * 280.80599 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0354 3.6025 1.2557 6 7 3.5001 1.4442 -0.1203 7 7 4.3078 0.8207 0.6598 8 6 5.5506 1.0188 0.3007 9 6 6.7713 0.4538 0.9804 10 6 5.5447 1.8462 -0.8245 11 6 4.2099 2.1058 -1.0818 12 6 3.6648 2.9344 -2.1691 13 8 2.4623 2.9980 -2.3408 14 7 4.4980 3.6225 -2.9745 15 6 3.9538 4.5278 -3.9896 16 1 2.8757 4.4712 -4.1398 17 6 4.8223 4.8161 -5.2158 18 1 5.7614 4.2785 -5.3475 19 6 4.1344 5.3752 -6.4797 20 7 4.1267 6.8436 -6.2826 21 6 4.3518 7.8179 -7.2181 22 1 4.5742 8.8270 -6.9041 23 6 4.2941 7.5086 -8.5701 24 7 3.8574 6.3288 -8.9571 25 14 4.8362 8.7666 -9.8400 26 1 5.2811 10.0049 -9.1515 27 1 5.9595 8.2124 -10.6376 28 1 3.6984 9.0830 -10.7404 29 6 3.8202 7.0186 -4.8438 30 6 4.6151 5.8996 -4.1371 31 1 5.4123 6.1883 -3.4521 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 1.6054 1.9815 -0.8418 38 1 0.5562 2.0471 1.4400 39 1 2.1407 1.6420 2.1427 40 1 3.1143 3.6819 1.1230 41 1 1.5298 4.0870 0.4205 42 1 1.7474 4.0897 2.1873 43 1 7.1100 1.1450 1.7523 44 1 6.5229 -0.5052 1.4350 45 1 7.5638 0.3131 0.2455 46 1 6.4002 2.2063 -1.3768 47 1 5.4579 3.5183 -2.8820 48 1 4.7058 5.1143 -7.3705 49 1 3.1151 4.9968 -6.5566 50 1 3.8175 6.1125 -9.9019 51 1 4.1546 7.9975 -4.5003 52 1 2.7518 6.8967 -4.6652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960711581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:13 Heat of formation + Delta-G solvation = 87.439697 kcal Electronic energy + Delta-G solvation = -30753.594497 eV Core-core repulsion = 26756.258049 eV Total energy + Delta-G solvation = -3997.336448 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.80152 -39.73116 -38.28708 -37.24880 -34.59911 -32.89355 -32.81047 -32.06277 -31.14094 -30.00149 -28.71890 -27.19628 -25.90116 -25.74821 -23.79618 -23.14337 -21.91008 -21.44663 -20.59486 -20.49735 -19.36424 -19.17289 -17.69413 -16.89315 -16.57372 -16.34499 -16.02543 -15.10448 -14.77992 -14.74650 -14.56981 -14.47085 -14.34480 -13.76332 -13.68477 -13.40331 -13.27040 -12.99568 -12.79194 -12.70841 -12.58686 -12.41643 -12.27586 -12.20035 -11.80368 -11.62693 -11.57539 -11.31084 -11.23264 -11.00282 -10.93337 -10.87359 -10.75578 -10.43879 -10.26892 -10.16347 -9.95089 -9.77296 -9.28179 -9.24919 -8.99981 -8.77189 -8.41182 -6.89552 -5.82821 -3.17439 1.13069 2.16410 2.38973 3.03309 3.09502 3.36327 3.42357 3.44786 4.10721 4.24524 4.38479 4.44808 4.46162 4.52465 4.79376 4.82754 4.89174 5.01534 5.07763 5.08735 5.18430 5.30372 5.30764 5.34084 5.37830 5.38454 5.41886 5.44674 5.52105 5.60173 5.61743 5.70558 5.72641 5.76756 5.78380 5.84777 5.86995 5.95690 6.01527 6.09960 6.17207 6.34994 6.48152 6.65134 6.65379 6.70521 6.85413 7.30454 7.39787 7.50086 7.68790 7.94721 8.07289 8.17248 9.07907 9.70552 10.47255 11.31668 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002212 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.922870 B =12654.682628 C =13335.228156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.132 3.868 4 C -0.131 4.131 5 C -0.154 4.154 6 N -0.243 5.243 7 N -0.273 5.273 8 C 0.017 3.983 9 C -0.065 4.065 10 C -0.190 4.190 11 C -0.032 4.032 12 C 0.594 3.406 13 O -0.537 6.537 14 N -0.679 5.679 15 C 0.095 3.905 16 H 0.134 0.866 17 C -0.177 4.177 18 H 0.105 0.895 19 C 0.185 3.815 20 N -0.592 5.592 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.914 5.914 25 Si 0.913 3.087 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.290 1.290 29 C 0.156 3.844 30 C -0.180 4.180 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.158 0.842 47 H 0.402 0.598 48 H 0.091 0.909 49 H 0.027 0.973 50 H 0.254 0.746 51 H 0.052 0.948 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.964 -13.055 21.833 25.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.032 3.968 4 C -0.169 4.169 5 C -0.211 4.211 6 N -0.030 5.030 7 N -0.106 5.106 8 C -0.139 4.139 9 C -0.123 4.123 10 C -0.219 4.219 11 C -0.161 4.161 12 C 0.379 3.621 13 O -0.415 6.415 14 N -0.327 5.327 15 C -0.010 4.010 16 H 0.152 0.848 17 C -0.198 4.198 18 H 0.123 0.877 19 C 0.059 3.941 20 N -0.316 5.316 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.560 5.560 25 Si 0.743 3.257 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.217 1.217 29 C 0.029 3.971 30 C -0.202 4.202 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.156 0.844 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.176 0.824 47 H 0.237 0.763 48 H 0.110 0.890 49 H 0.045 0.955 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -0.727 -13.451 22.228 25.991 hybrid contribution 1.457 0.898 -1.215 2.099 sum 0.731 -12.553 21.013 24.488 Atomic orbital electron populations 1.21800 0.94056 1.02448 1.02606 1.21791 0.96921 0.94438 1.03415 1.22324 0.72853 0.99145 1.02485 1.21944 1.02381 0.96399 0.96195 1.21773 1.01613 0.95469 1.02279 1.45841 1.07353 1.31939 1.17871 1.73039 1.01138 1.17876 1.18594 1.21960 0.92777 1.01654 0.97461 1.20061 0.91795 1.00679 0.99807 1.22090 0.94881 1.04346 1.00575 1.21374 0.92019 1.05314 0.97379 1.16862 0.86052 0.78739 0.80404 1.90725 1.14441 1.64614 1.71730 1.45035 1.09601 1.43430 1.34655 1.21907 0.98256 0.90561 0.90319 0.84819 1.24673 1.01174 1.01212 0.92790 0.87744 1.21070 0.97188 0.83245 0.92607 1.45178 1.81380 1.01703 1.03312 1.19033 1.40912 0.90167 0.85418 0.90467 1.24920 1.00754 0.97501 0.97085 1.69907 1.50234 1.21003 1.14894 0.86036 0.77907 0.80322 0.81410 1.20350 1.21606 1.21653 1.21119 0.95525 0.94506 0.85965 1.24396 1.03392 0.90712 1.01693 0.87807 0.91919 0.91932 0.92037 0.91370 0.90610 0.84361 0.89466 0.90756 0.93159 0.91886 0.92237 0.90980 0.91154 0.90631 0.82434 0.76310 0.89041 0.95540 0.93550 0.92912 0.95437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.15 0.36 -0.77 16 2 C -0.13 -1.20 5.50 -26.73 -0.15 -1.34 16 3 C 0.13 1.45 2.42 -67.93 -0.16 1.28 16 4 C -0.13 -1.23 5.40 -26.73 -0.14 -1.37 16 5 C -0.15 -1.59 9.80 37.16 0.36 -1.22 16 6 N -0.24 -2.99 2.54 -50.69 -0.13 -3.12 16 7 N -0.27 -3.32 11.57 33.64 0.39 -2.93 16 8 C 0.02 0.19 7.22 -82.47 -0.60 -0.41 16 9 C -0.06 -0.47 10.45 36.01 0.38 -0.09 16 10 C -0.19 -2.03 10.44 -38.99 -0.41 -2.43 16 11 C -0.03 -0.41 6.96 -82.06 -0.57 -0.98 16 12 C 0.59 8.54 7.79 -12.64 -0.10 8.44 16 13 O -0.54 -9.08 13.96 5.25 0.07 -9.01 16 14 N -0.68 -9.06 5.55 -54.96 -0.31 -9.37 16 15 C 0.10 1.55 5.99 -67.93 -0.41 1.14 16 16 H 0.13 2.45 7.38 -51.93 -0.38 2.07 16 17 C -0.18 -3.23 7.06 -89.22 -0.63 -3.85 16 18 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 19 C 0.18 4.36 5.69 -2.40 -0.01 4.34 16 20 N -0.59 -14.92 3.38 -168.86 -0.57 -15.49 16 21 C -0.23 -6.24 10.35 -15.06 -0.16 -6.39 16 22 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 23 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 24 N -0.91 -26.47 10.88 55.49 0.60 -25.87 16 25 Si 0.91 21.67 29.56 -169.99 -5.03 16.65 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 29 C 0.16 3.22 7.04 -2.41 -0.02 3.20 16 30 C -0.18 -3.11 7.06 -89.22 -0.63 -3.74 16 31 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.39 6.46 -51.93 -0.34 0.06 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.14 1.77 5.32 -51.93 -0.28 1.50 16 38 H 0.09 0.65 6.34 -51.93 -0.33 0.33 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.05 0.60 7.75 -51.93 -0.40 0.19 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.16 1.24 7.59 -52.48 -0.40 0.85 16 47 H 0.40 4.29 7.86 -40.82 -0.32 3.97 16 48 H 0.09 2.40 6.54 -51.93 -0.34 2.06 16 49 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 51 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 52 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 416.53 15.07 6.28 6.28 Total: -1.00 -31.68 416.53 -10.33 -42.02 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.67 Total: 5.28 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.97 Total: -4.44 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.01 Total: -56.78 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.68 -10.33 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960711581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.456 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds