Wall clock time and date at job start Wed Apr 1 2020 03:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47285 * 2 1 4 4 C 1.52996 * 109.47199 * 64.99648 * 3 2 1 5 5 C 1.53002 * 109.46963 * 185.00028 * 4 3 2 6 6 N 1.46502 * 109.47031 * 184.99836 * 3 2 1 7 7 N 1.28447 * 125.19037 * 304.83442 * 6 3 2 8 8 C 1.30865 * 110.92106 * 180.27922 * 7 6 3 9 9 C 1.50707 * 126.06748 * 179.74580 * 8 7 6 10 10 C 1.39669 * 107.86360 * 359.71710 * 8 7 6 11 11 C 1.36601 * 125.18818 * 124.62078 * 6 3 2 12 12 C 1.47167 * 126.88408 * 0.02562 * 11 6 3 13 13 O 1.21634 * 119.99747 * 354.12310 * 12 11 6 14 14 N 1.34777 * 119.99813 * 174.12808 * 12 11 6 15 15 C 1.46497 * 119.99628 * 184.73983 * 14 12 11 16 16 H 1.08998 * 115.51814 * 350.58123 * 15 14 12 17 17 C 1.53003 * 117.44147 * 205.16680 * 15 14 12 18 18 H 1.09000 * 119.53669 * 5.75813 * 17 15 14 19 19 C 1.54389 * 118.12526 * 160.85169 * 17 15 14 20 20 N 1.48154 * 104.61400 * 87.18981 * 19 17 15 21 21 C 1.36935 * 127.83375 * 140.41871 * 20 19 17 22 22 H 1.08001 * 119.99963 * 196.14879 * 21 20 19 23 23 C 1.38811 * 120.00359 * 16.15227 * 21 20 19 24 24 N 1.31621 * 119.99522 * 8.70387 * 23 21 20 25 25 Si 1.86793 * 120.00243 * 188.70870 * 23 21 20 26 26 H 1.48507 * 109.47018 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47346 * 119.99457 * 25 23 21 28 28 H 1.48503 * 109.47220 * 240.00162 * 25 23 21 29 29 C 1.48146 * 104.32611 * 320.41640 * 20 19 17 30 30 C 1.53002 * 117.40722 * 135.94015 * 15 14 12 31 31 H 1.09000 * 119.53619 * 355.89531 * 30 15 14 32 32 H 1.09000 * 109.47148 * 59.99941 * 1 2 3 33 33 H 1.08997 * 109.47547 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47302 * 300.00065 * 1 2 3 35 35 H 1.08994 * 109.47212 * 239.99476 * 2 1 3 36 36 H 1.09006 * 109.47137 * 119.99631 * 2 1 3 37 37 H 1.08998 * 109.46913 * 304.99941 * 3 2 1 38 38 H 1.09002 * 109.47300 * 305.00365 * 4 3 2 39 39 H 1.09007 * 109.47277 * 65.00189 * 4 3 2 40 40 H 1.08994 * 109.47120 * 300.00124 * 5 4 3 41 41 H 1.08999 * 109.46934 * 60.00622 * 5 4 3 42 42 H 1.09008 * 109.46697 * 180.02562 * 5 4 3 43 43 H 1.09004 * 109.46941 * 269.96192 * 9 8 7 44 44 H 1.09003 * 109.46793 * 29.95814 * 9 8 7 45 45 H 1.08990 * 109.46810 * 149.95743 * 9 8 7 46 46 H 1.08004 * 127.31676 * 180.02562 * 10 8 7 47 47 H 0.96996 * 119.99809 * 4.73685 * 14 12 11 48 48 H 1.08997 * 110.41127 * 205.97596 * 19 17 15 49 49 H 1.08998 * 110.40551 * 328.41364 * 19 17 15 50 50 H 0.97003 * 119.99337 * 180.02562 * 24 23 21 51 51 H 1.08996 * 110.40745 * 158.36949 * 29 20 19 52 52 H 1.09000 * 110.40670 * 280.80599 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1266 1.3073 5 6 2.0354 3.6025 1.2557 6 7 3.5001 1.4442 -0.1203 7 7 4.3078 0.8207 0.6598 8 6 5.5506 1.0188 0.3007 9 6 6.7713 0.4538 0.9804 10 6 5.5447 1.8462 -0.8245 11 6 4.2099 2.1058 -1.0818 12 6 3.6648 2.9344 -2.1691 13 8 2.4623 2.9980 -2.3408 14 7 4.4980 3.6225 -2.9745 15 6 3.9538 4.5278 -3.9896 16 1 2.8757 4.4712 -4.1398 17 6 4.8223 4.8161 -5.2158 18 1 5.7614 4.2785 -5.3475 19 6 4.1344 5.3752 -6.4797 20 7 4.1267 6.8436 -6.2826 21 6 4.3518 7.8179 -7.2181 22 1 4.5742 8.8270 -6.9041 23 6 4.2941 7.5086 -8.5701 24 7 3.8574 6.3288 -8.9571 25 14 4.8362 8.7666 -9.8400 26 1 5.2811 10.0049 -9.1515 27 1 5.9595 8.2124 -10.6376 28 1 3.6984 9.0830 -10.7404 29 6 3.8202 7.0186 -4.8438 30 6 4.6151 5.8996 -4.1371 31 1 5.4123 6.1883 -3.4521 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 1.6054 1.9815 -0.8418 38 1 0.5562 2.0471 1.4400 39 1 2.1407 1.6420 2.1427 40 1 3.1143 3.6819 1.1230 41 1 1.5298 4.0870 0.4205 42 1 1.7474 4.0897 2.1873 43 1 7.1100 1.1450 1.7523 44 1 6.5229 -0.5052 1.4350 45 1 7.5638 0.3131 0.2455 46 1 6.4002 2.2063 -1.3768 47 1 5.4579 3.5183 -2.8820 48 1 4.7058 5.1143 -7.3705 49 1 3.1151 4.9968 -6.5566 50 1 3.8175 6.1125 -9.9019 51 1 4.1546 7.9975 -4.5003 52 1 2.7518 6.8967 -4.6652 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960711581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:12 Heat of formation + Delta-G solvation = 69.324802 kcal Electronic energy + Delta-G solvation = -30754.380018 eV Core-core repulsion = 26756.258049 eV Total energy + Delta-G solvation = -3998.121969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.66916 -41.06049 -39.71286 -38.04562 -36.14509 -34.49840 -33.57436 -32.81431 -32.55991 -31.40367 -29.40277 -28.93712 -27.67568 -26.58031 -25.02466 -23.89680 -23.26050 -22.39735 -22.05192 -21.59222 -20.90981 -20.23624 -18.87664 -18.61612 -17.70749 -17.34879 -17.11618 -16.72050 -15.94332 -15.82082 -15.68374 -15.42984 -15.32346 -15.11742 -14.95040 -14.64123 -14.48987 -14.10561 -13.81735 -13.60546 -13.41560 -13.36803 -13.26509 -13.22806 -13.10902 -12.93846 -12.87253 -12.75332 -12.56525 -12.14063 -12.07748 -12.05140 -11.99359 -11.90117 -11.69390 -11.68219 -11.60008 -11.07839 -10.86570 -10.71490 -10.23265 -9.80596 -9.74058 -8.92101 -7.92243 -5.29218 0.16276 1.24863 1.47868 1.48156 1.56657 1.59333 1.94944 2.02221 2.48351 2.83022 3.26881 3.31867 3.38971 3.59999 3.69427 3.77535 3.80268 3.89137 4.00629 4.03922 4.12180 4.16233 4.29980 4.33963 4.36515 4.40920 4.48330 4.52966 4.63838 4.65703 4.75239 4.77622 4.87842 4.88378 4.92462 4.95097 4.98776 5.01153 5.05651 5.09168 5.13668 5.25433 5.27169 5.31306 5.36409 5.43930 5.50661 5.60886 5.64303 5.82202 6.16462 6.31078 6.96121 7.00154 7.11435 7.66869 8.45117 9.21912 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002212 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.922870 B =12654.682628 C =13335.228156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.127 3.873 4 C -0.124 4.124 5 C -0.149 4.149 6 N -0.249 5.249 7 N -0.286 5.286 8 C 0.010 3.990 9 C -0.063 4.063 10 C -0.178 4.178 11 C -0.057 4.057 12 C 0.595 3.405 13 O -0.569 6.569 14 N -0.665 5.665 15 C 0.118 3.882 16 H 0.110 0.890 17 C -0.176 4.176 18 H 0.130 0.870 19 C 0.189 3.811 20 N -0.616 5.616 21 C -0.239 4.239 22 H 0.083 0.917 23 C -0.063 4.063 24 N -0.948 5.948 25 Si 0.981 3.019 26 H -0.264 1.264 27 H -0.289 1.289 28 H -0.293 1.293 29 C 0.148 3.852 30 C -0.162 4.162 31 H 0.137 0.863 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.188 0.812 47 H 0.419 0.581 48 H 0.059 0.941 49 H -0.004 1.004 50 H 0.250 0.750 51 H 0.064 0.936 52 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 -13.229 24.079 27.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.027 3.973 4 C -0.162 4.162 5 C -0.207 4.207 6 N -0.036 5.036 7 N -0.120 5.120 8 C -0.146 4.146 9 C -0.121 4.121 10 C -0.207 4.207 11 C -0.185 4.185 12 C 0.382 3.618 13 O -0.448 6.448 14 N -0.314 5.314 15 C 0.011 3.989 16 H 0.128 0.872 17 C -0.197 4.197 18 H 0.147 0.853 19 C 0.062 3.938 20 N -0.340 5.340 21 C -0.368 4.368 22 H 0.101 0.899 23 C -0.256 4.256 24 N -0.595 5.595 25 Si 0.809 3.191 26 H -0.188 1.188 27 H -0.216 1.216 28 H -0.221 1.221 29 C 0.023 3.977 30 C -0.183 4.183 31 H 0.155 0.845 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.205 0.795 47 H 0.257 0.743 48 H 0.078 0.922 49 H 0.014 0.986 50 H 0.059 0.941 51 H 0.083 0.917 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 1.121 -13.627 24.521 28.075 hybrid contribution 0.839 0.920 -1.845 2.226 sum 1.961 -12.707 22.675 26.067 Atomic orbital electron populations 1.21797 0.92596 1.03329 1.02852 1.21739 0.98125 0.93308 1.02680 1.22360 0.72643 0.99886 1.02420 1.21927 1.03600 0.95435 0.95243 1.21724 1.00172 0.96267 1.02491 1.45971 1.07723 1.32042 1.17905 1.73040 1.01930 1.18152 1.18885 1.22604 0.93230 1.01259 0.97472 1.20195 0.90720 1.00790 1.00430 1.22508 0.94716 1.03187 1.00243 1.21284 0.93084 1.06487 0.97685 1.17112 0.85637 0.78498 0.80584 1.90724 1.15927 1.65638 1.72559 1.44759 1.10432 1.42640 1.33606 1.21420 0.96901 0.90703 0.89895 0.87173 1.24352 1.01966 1.02612 0.90750 0.85256 1.20798 0.95552 0.83243 0.94160 1.45475 1.81710 1.01971 1.04861 1.19423 1.40108 0.90985 0.86271 0.89909 1.25771 1.01377 0.99444 0.99058 1.70104 1.51763 1.22894 1.14781 0.84980 0.77017 0.78481 0.78626 1.18767 1.21627 1.22060 1.21255 0.95703 0.96610 0.84154 1.24293 1.03326 0.89455 1.01187 0.84490 0.92840 0.90747 0.90594 0.92998 0.90283 0.86523 0.87473 0.90607 0.94953 0.93324 0.90583 0.89837 0.90967 0.88677 0.79478 0.74251 0.92242 0.98581 0.94101 0.91708 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 71.98 0.70 -1.40 16 2 C -0.12 -2.22 5.50 30.59 0.17 -2.05 16 3 C 0.13 2.77 2.42 44.99 0.11 2.88 16 4 C -0.12 -2.21 5.40 30.59 0.17 -2.04 16 5 C -0.15 -2.99 9.80 71.98 0.71 -2.29 16 6 N -0.25 -5.98 2.54 -314.29 -0.80 -6.78 16 7 N -0.29 -6.57 11.57 -47.49 -0.55 -7.12 16 8 C 0.01 0.19 7.22 43.05 0.31 0.50 16 9 C -0.06 -0.71 10.45 71.24 0.74 0.03 16 10 C -0.18 -3.33 10.44 22.65 0.24 -3.10 16 11 C -0.06 -1.40 6.96 40.79 0.28 -1.11 16 12 C 0.59 16.77 7.79 86.59 0.67 17.45 16 13 O -0.57 -19.67 13.96 -4.14 -0.06 -19.73 16 14 N -0.66 -16.58 5.55 -446.04 -2.48 -19.05 16 15 C 0.12 3.74 5.99 44.99 0.27 4.01 16 16 H 0.11 4.14 7.38 -2.39 -0.02 4.12 16 17 C -0.18 -6.26 7.06 -9.88 -0.07 -6.33 16 18 H 0.13 3.99 8.14 -2.39 -0.02 3.97 16 19 C 0.19 9.20 5.69 86.53 0.49 9.69 16 20 N -0.62 -31.56 3.38 -688.14 -2.32 -33.88 16 21 C -0.24 -13.28 10.35 84.03 0.87 -12.41 16 22 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 23 C -0.06 -3.54 5.40 84.86 0.46 -3.08 16 24 N -0.95 -56.81 10.88 21.65 0.24 -56.57 16 25 Si 0.98 45.09 29.56 68.60 2.03 47.12 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 29 C 0.15 6.09 7.04 86.53 0.61 6.70 16 30 C -0.16 -5.27 7.06 -9.89 -0.07 -5.34 16 31 H 0.14 3.65 8.14 -2.39 -0.02 3.63 16 32 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.85 6.46 -2.38 -0.02 0.83 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.12 3.10 5.32 -2.39 -0.01 3.09 16 38 H 0.11 1.44 6.34 -2.39 -0.02 1.43 16 39 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.03 0.75 7.75 -2.39 -0.02 0.73 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 43 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.19 2.20 7.59 -2.91 -0.02 2.18 16 47 H 0.42 7.60 7.86 -92.71 -0.73 6.87 16 48 H 0.06 3.26 6.54 -2.39 -0.02 3.25 16 49 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 50 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 51 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 52 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -71.58 416.53 2.90 -68.68 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.19 Total: 25.24 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 6.65 Total: 2.10 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -5.91 Total: -123.41 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.58 2.90 -68.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960711581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.009 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds