Wall clock time and date at job start Wed Apr 1 2020 04:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46900 * 2 1 4 4 C 1.53006 * 109.47219 * 240.00338 * 2 1 3 5 5 N 1.46497 * 109.47546 * 119.99612 * 2 1 3 6 6 C 1.34268 * 125.74770 * 74.99791 * 5 2 1 7 7 C 1.38045 * 107.41365 * 180.02562 * 6 5 2 8 8 C 1.47432 * 126.41272 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00151 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99716 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99525 * 179.97438 * 10 8 7 12 12 C 1.53957 * 113.57619 * 154.99971 * 11 10 8 13 13 C 1.52906 * 86.77902 * 139.33961 * 12 11 10 14 14 C 1.52911 * 121.13708 * 209.38067 * 13 12 11 15 15 C 1.53953 * 86.78498 * 209.37459 * 14 13 12 16 16 N 1.46503 * 113.58214 * 139.33447 * 15 14 13 17 17 C 1.36934 * 119.99614 * 107.28819 * 16 15 14 18 18 H 1.07999 * 120.00553 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99934 * 180.02562 * 17 16 15 20 20 N 1.31628 * 119.99852 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00159 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46835 * 90.00156 * 21 19 17 23 23 H 1.48502 * 109.46874 * 209.99789 * 21 19 17 24 24 H 1.48492 * 109.46972 * 329.99823 * 21 19 17 25 25 C 1.52908 * 121.14322 * 100.81952 * 13 12 11 26 26 C 1.52912 * 88.04235 * 335.09642 * 13 12 11 27 27 C 1.41293 * 107.17118 * 0.24071 * 7 6 5 28 28 N 1.30449 * 108.02060 * 359.59512 * 27 7 6 29 29 H 1.09006 * 109.47250 * 300.00127 * 1 2 3 30 30 H 1.08999 * 109.47589 * 60.00184 * 1 2 3 31 31 H 1.09005 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46883 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46849 * 300.00269 * 3 2 1 34 34 H 1.08997 * 109.47070 * 60.00072 * 3 2 1 35 35 H 1.08998 * 109.46409 * 299.99989 * 4 2 1 36 36 H 1.08993 * 109.46734 * 59.99696 * 4 2 1 37 37 H 1.09004 * 109.46813 * 179.97438 * 4 2 1 38 38 H 1.07993 * 126.29004 * 0.03001 * 6 5 2 39 39 H 0.96996 * 120.00163 * 359.97438 * 10 8 7 40 40 H 1.08996 * 112.87587 * 23.86034 * 11 10 8 41 41 H 1.08997 * 113.65822 * 253.80753 * 12 11 10 42 42 H 1.08997 * 113.66382 * 24.86280 * 12 11 10 43 43 H 1.09001 * 113.66341 * 323.84544 * 14 13 12 44 44 H 1.08996 * 113.66624 * 94.90194 * 14 13 12 45 45 H 1.09002 * 113.58246 * 270.13531 * 15 14 13 46 46 H 0.96995 * 119.99908 * 287.28666 * 16 15 14 47 47 H 0.96994 * 119.99926 * 180.02562 * 20 19 17 48 48 H 1.09003 * 113.66175 * 265.09643 * 25 13 12 49 49 H 1.09004 * 113.66268 * 36.05302 * 25 13 12 50 50 H 1.09002 * 113.66342 * 270.42772 * 26 13 12 51 51 H 1.08994 * 113.65844 * 139.37694 * 26 13 12 52 52 H 1.07996 * 125.98458 * 179.73658 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6905 1.1962 6 6 2.0140 -2.0188 1.3919 7 6 2.5563 -2.2544 2.6393 8 6 2.7493 -3.5704 3.2753 9 8 2.4161 -4.5832 2.6904 10 7 3.2941 -3.6509 4.5054 11 6 3.4854 -4.9586 5.1376 12 6 4.6096 -4.9755 6.1894 13 6 3.6861 -5.8517 7.0364 14 6 3.7561 -5.8287 8.5638 15 6 3.2816 -7.2926 8.5212 16 7 3.9619 -8.1577 9.4882 17 6 3.2941 -8.6012 10.5984 18 1 2.2661 -8.3131 10.7613 19 6 3.9389 -9.4204 11.5150 20 7 5.1920 -9.7712 11.3167 21 14 3.0282 -10.0250 13.0298 22 1 2.3588 -11.3145 12.7230 23 1 3.9927 -10.2202 14.1420 24 1 2.0095 -9.0208 13.4284 25 6 3.8760 -7.3675 7.1031 26 6 2.5027 -5.2352 6.2898 27 6 2.8860 -0.9979 3.1949 28 7 2.5675 -0.0770 2.3275 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 1.6526 -2.7656 0.7005 39 1 3.5596 -2.8431 4.9721 40 1 3.5513 -5.7726 4.4157 41 1 5.5128 -5.4864 5.8560 42 1 4.8115 -3.9991 6.6296 43 1 4.7667 -5.7076 8.9537 44 1 3.0387 -5.1496 9.0244 45 1 2.1972 -7.4005 8.5456 46 1 4.8853 -8.4162 9.3421 47 1 5.6424 -10.3439 11.9570 48 1 3.2545 -7.9177 6.3966 49 1 4.9204 -7.6790 7.0808 50 1 2.1124 -4.3317 6.7584 51 1 1.7230 -5.9535 6.0368 52 1 3.3267 -0.8296 4.1664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964168337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:30 Heat of formation + Delta-G solvation = 86.657567 kcal Electronic energy + Delta-G solvation = -29368.917377 eV Core-core repulsion = 25371.547013 eV Total energy + Delta-G solvation = -3997.370364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.86739 -40.39264 -38.87003 -37.22840 -35.77449 -33.59351 -32.23064 -31.19784 -30.40334 -29.39071 -28.10906 -27.96450 -25.69627 -25.20340 -24.57760 -23.67244 -22.71036 -21.73550 -20.34095 -19.96924 -19.80587 -18.00254 -17.64215 -16.93738 -16.36822 -16.18249 -15.92967 -15.22532 -15.18539 -14.75281 -14.68537 -14.63305 -14.22894 -14.05215 -13.87810 -13.43811 -13.21035 -12.95703 -12.90604 -12.82186 -12.68567 -12.49961 -12.42056 -12.29119 -12.06765 -11.87527 -11.85012 -11.60915 -11.30096 -11.21775 -10.94714 -10.82957 -10.66537 -10.30672 -10.05083 -9.94153 -9.88474 -9.72488 -9.66943 -9.29876 -9.13446 -8.84615 -8.81076 -6.90487 -5.74167 -3.02265 1.24578 1.84704 1.88899 3.21154 3.33937 3.45754 3.50925 3.52529 3.78597 4.07003 4.17866 4.32694 4.37905 4.60960 4.64485 4.76680 4.79172 4.82199 4.84909 4.87273 4.98822 4.99845 5.00318 5.07491 5.15377 5.15865 5.32741 5.39467 5.46321 5.50454 5.51121 5.61453 5.66537 5.80002 5.86764 5.98072 6.01753 6.04764 6.08778 6.20624 6.26863 6.30343 6.42990 6.48019 6.49067 6.61766 6.70885 6.99957 7.19173 7.20389 7.52511 7.73812 8.23481 8.44909 9.55801 10.15141 10.49553 11.48416 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.036847 B = 0.001498 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.713712 B =18686.525498 C =18728.257747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.144 4.144 4 C -0.163 4.163 5 N -0.351 5.351 6 C 0.128 3.872 7 C -0.293 4.293 8 C 0.594 3.406 9 O -0.553 6.553 10 N -0.715 5.715 11 C 0.126 3.874 12 C -0.130 4.130 13 C -0.101 4.101 14 C -0.148 4.148 15 C 0.168 3.832 16 N -0.714 5.714 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.129 4.129 26 C -0.124 4.124 27 C 0.078 3.922 28 N -0.293 5.293 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.184 0.816 39 H 0.398 0.602 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.060 0.940 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.071 0.929 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.187 24.207 -26.634 36.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.131 5.131 6 C -0.023 4.023 7 C -0.308 4.308 8 C 0.382 3.618 9 O -0.431 6.431 10 N -0.364 5.364 11 C 0.022 3.978 12 C -0.169 4.169 13 C -0.103 4.103 14 C -0.189 4.189 15 C 0.056 3.944 16 N -0.352 5.352 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.168 4.168 26 C -0.163 4.163 27 C -0.110 4.110 28 N -0.112 5.112 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.201 0.799 39 H 0.232 0.768 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.090 0.910 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.607 24.752 -27.260 37.409 hybrid contribution 0.044 -0.895 1.297 1.577 sum -6.563 23.857 -25.963 35.865 Atomic orbital electron populations 1.22291 0.92486 1.03470 1.03710 1.20886 0.94695 0.93980 0.81058 1.21923 1.02303 0.92585 1.03321 1.22294 1.02589 1.01261 0.95974 1.48851 1.45875 1.04199 1.14144 1.22852 0.96096 0.86428 0.96951 1.20304 1.18305 0.94279 0.97921 1.17284 0.76558 0.87196 0.80787 1.90770 1.51557 1.36841 1.63956 1.45817 1.63607 1.09591 1.17393 1.22609 0.96831 0.85421 0.92982 1.23178 0.97256 1.00517 0.95907 1.22070 0.95847 0.96169 0.96183 1.23631 1.01631 1.01531 0.92149 1.21549 0.95906 0.89119 0.87844 1.42418 1.13359 1.56476 1.22902 1.19323 0.95848 1.23647 0.98445 0.91123 1.24754 0.96246 1.00728 0.99275 1.69664 1.10431 1.40594 1.37495 0.86196 0.78514 0.78724 0.82812 1.21736 1.21808 1.20770 1.23209 1.01640 0.92347 0.99573 1.23144 0.96755 1.00747 0.95654 1.24063 0.98098 0.89700 0.99128 1.77134 1.17964 1.21959 0.94192 0.91381 0.90035 0.91539 0.91490 0.90727 0.90823 0.91278 0.89712 0.91265 0.79932 0.76813 0.86827 0.90888 0.89894 0.90337 0.92757 0.90814 0.78129 0.93533 0.92082 0.90063 0.89882 0.91007 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 8.72 37.15 0.32 -0.34 16 2 C 0.18 0.90 1.23 -131.82 -0.16 0.74 16 3 C -0.14 -0.67 8.07 37.16 0.30 -0.37 16 4 C -0.16 -0.58 8.28 37.16 0.31 -0.28 16 5 N -0.35 -2.79 3.41 -48.11 -0.16 -2.96 16 6 C 0.13 1.13 10.39 -16.56 -0.17 0.96 16 7 C -0.29 -2.94 6.13 -105.06 -0.64 -3.58 16 8 C 0.59 7.25 7.81 -12.52 -0.10 7.15 16 9 O -0.55 -8.76 16.50 5.28 0.09 -8.67 16 10 N -0.71 -7.37 5.35 -53.92 -0.29 -7.66 16 11 C 0.13 1.50 4.24 -66.95 -0.28 1.22 16 12 C -0.13 -1.53 7.59 -26.28 -0.20 -1.73 16 13 C -0.10 -1.44 1.11 -154.71 -0.17 -1.61 16 14 C -0.15 -2.55 7.64 -26.28 -0.20 -2.75 16 15 C 0.17 3.36 4.48 -66.94 -0.30 3.06 16 16 N -0.71 -18.10 5.40 -52.47 -0.28 -18.39 16 17 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 C -0.13 -2.15 7.59 -26.28 -0.20 -2.35 16 26 C -0.12 -1.58 7.64 -26.28 -0.20 -1.78 16 27 C 0.08 0.66 11.50 -16.98 -0.20 0.47 16 28 N -0.29 -2.74 11.56 30.86 0.36 -2.39 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.43 8.03 -51.93 -0.42 0.01 16 35 H 0.07 0.23 7.34 -51.93 -0.38 -0.15 16 36 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.18 1.31 7.53 -52.49 -0.40 0.92 16 39 H 0.40 3.00 7.68 -40.82 -0.31 2.69 16 40 H 0.11 1.56 7.47 -51.93 -0.39 1.18 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 43 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 46 H 0.38 10.33 7.92 -40.82 -0.32 10.00 16 47 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 50 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 52 H 0.19 1.01 7.50 -52.49 -0.39 0.62 16 LS Contribution 423.84 15.07 6.39 6.39 Total: -1.00 -34.40 423.84 -9.26 -43.66 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.92 Total: 8.79 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.14 Total: -8.63 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.35 Total: -59.07 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.40 -9.26 -43.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964168337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.316 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds