Wall clock time and date at job start Wed Apr 1 2020 04:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46962 * 2 1 4 4 C 1.52999 * 109.47085 * 120.00257 * 2 1 3 5 5 N 1.46497 * 109.47511 * 65.87237 * 4 2 1 6 6 N 1.28447 * 125.18681 * 83.34943 * 5 4 2 7 7 C 1.30866 * 110.92647 * 180.02562 * 6 5 4 8 8 C 1.39669 * 107.85868 * 359.97438 * 7 6 5 9 9 C 1.36593 * 125.19344 * 263.37078 * 5 4 2 10 10 C 1.47158 * 126.88126 * 359.94284 * 9 5 4 11 11 O 1.21629 * 120.00320 * 356.44796 * 10 9 5 12 12 N 1.34778 * 119.99759 * 176.44567 * 10 9 5 13 13 C 1.47202 * 135.99918 * 4.99963 * 12 10 9 14 14 C 1.53207 * 87.73225 * 153.42574 * 13 12 10 15 15 C 1.47161 * 135.99718 * 185.36652 * 12 10 9 16 16 C 1.52509 * 114.05459 * 139.66543 * 14 13 12 17 17 C 1.53191 * 109.36900 * 190.01795 * 16 14 13 18 18 C 1.53141 * 109.35985 * 301.11415 * 17 16 14 19 19 N 1.46896 * 109.07668 * 56.56725 * 18 17 16 20 20 C 1.36937 * 120.69979 * 124.52683 * 19 18 17 21 21 H 1.07998 * 120.00238 * 328.84868 * 20 19 18 22 22 C 1.38814 * 120.00481 * 148.85618 * 20 19 18 23 23 N 1.31625 * 119.99707 * 344.58999 * 22 20 19 24 24 Si 1.86800 * 120.00473 * 164.59828 * 22 20 19 25 25 H 1.48497 * 109.47316 * 59.99346 * 24 22 20 26 26 H 1.48493 * 109.47255 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46809 * 299.99913 * 24 22 20 28 28 C 1.47142 * 118.60669 * 304.54489 * 19 18 17 29 29 H 1.08994 * 109.47638 * 62.90658 * 1 2 3 30 30 H 1.09005 * 109.46830 * 182.90709 * 1 2 3 31 31 H 1.08997 * 109.46856 * 302.90356 * 1 2 3 32 32 H 1.09003 * 109.46623 * 239.99829 * 2 1 3 33 33 H 1.08999 * 109.47003 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46856 * 299.99972 * 3 2 1 35 35 H 1.08996 * 109.47610 * 60.00026 * 3 2 1 36 36 H 1.08995 * 109.46946 * 305.87018 * 4 2 1 37 37 H 1.09003 * 109.46721 * 185.87355 * 4 2 1 38 38 H 1.08001 * 126.06698 * 179.73415 * 7 6 5 39 39 H 1.08001 * 127.31909 * 180.02562 * 8 7 6 40 40 H 1.09003 * 113.48724 * 268.11455 * 13 12 10 41 41 H 1.08998 * 113.48588 * 38.62493 * 13 12 10 42 42 H 1.08998 * 113.48849 * 321.37513 * 15 12 10 43 43 H 1.08998 * 113.48836 * 91.88161 * 15 12 10 44 44 H 1.08999 * 109.49041 * 309.98761 * 16 14 13 45 45 H 1.08998 * 109.49127 * 70.05233 * 16 14 13 46 46 H 1.09004 * 109.49282 * 181.14197 * 17 16 14 47 47 H 1.09003 * 109.48603 * 61.07679 * 17 16 14 48 48 H 1.09006 * 109.53454 * 296.68760 * 18 17 16 49 49 H 1.08997 * 109.53905 * 176.44713 * 18 17 16 50 50 H 0.96996 * 119.99786 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.63418 * 291.52741 * 28 19 18 52 52 H 1.08999 * 109.80766 * 171.01928 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6706 -2.1373 1.1807 6 7 2.3272 -3.0439 0.5509 7 6 1.7481 -4.2110 0.6739 8 6 0.6062 -4.0418 1.4602 9 6 0.5750 -2.6947 1.7763 10 6 -0.4353 -2.0020 2.5918 11 8 -0.3050 -0.8198 2.8465 12 7 -1.5050 -2.6775 3.0564 13 6 -1.9593 -4.0776 3.0462 14 6 -2.7406 -3.7697 4.3276 15 6 -2.7342 -2.3379 3.7908 16 6 -4.1234 -4.4107 4.3819 17 6 -4.9016 -3.8402 5.5717 18 6 -4.1298 -4.1204 6.8644 19 7 -2.7800 -3.5521 6.7505 20 6 -2.3145 -2.6639 7.6830 21 1 -3.0012 -1.9986 8.1851 22 6 -0.9599 -2.6184 7.9828 23 7 -0.1711 -3.6060 7.6154 24 14 -0.2564 -1.1560 8.9079 25 1 -0.9208 -1.0410 10.2310 26 1 1.2030 -1.3487 9.1024 27 1 -0.4926 0.0843 8.1261 28 6 -1.9388 -3.9570 5.6132 29 1 -0.3634 0.4680 -0.9148 30 1 -0.3633 -1.0264 0.0521 31 1 -0.3633 0.5582 0.8628 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.5934 -0.2718 2.1360 37 1 3.1250 -0.6311 1.3033 38 1 2.0901 -5.1393 0.2407 39 1 -0.1020 -4.8008 1.7581 40 1 -2.5971 -4.3212 2.1965 41 1 -1.1530 -4.7970 3.1892 42 1 -2.5841 -1.5846 4.5642 43 1 -3.5803 -2.1136 3.1414 44 1 -4.6609 -4.1946 3.4585 45 1 -4.0198 -5.4894 4.4988 46 1 -5.8829 -4.3119 5.6244 47 1 -5.0213 -2.7641 5.4456 48 1 -4.0601 -5.1969 7.0213 49 1 -4.6489 -3.6611 7.7057 50 1 0.7755 -3.5741 7.8245 51 1 -1.6578 -5.0047 5.7202 52 1 -1.0417 -3.3389 5.5788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981795831.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:02 Heat of formation + Delta-G solvation = 98.149528 kcal Electronic energy + Delta-G solvation = -32490.582457 eV Core-core repulsion = 28493.710422 eV Total energy + Delta-G solvation = -3996.872035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.49388 -40.45717 -38.03765 -36.58511 -35.77691 -32.98672 -32.06372 -31.27691 -30.22165 -29.56474 -27.30328 -26.70365 -26.11517 -25.79665 -25.35247 -22.62190 -22.24099 -21.57789 -20.67757 -20.32527 -19.15715 -17.98864 -17.19643 -16.70443 -16.29068 -16.13363 -15.40442 -15.36108 -14.93312 -14.80405 -14.13720 -13.98361 -13.82477 -13.71458 -13.54835 -13.46596 -13.22193 -13.01900 -12.85959 -12.66558 -12.30450 -12.20638 -12.06856 -11.92637 -11.59309 -11.40076 -11.28822 -11.14811 -10.94384 -10.93992 -10.74470 -10.72403 -10.48666 -10.27828 -10.12011 -9.92848 -9.86125 -9.47315 -9.42984 -9.10851 -8.93002 -8.48428 -8.37617 -6.65787 -5.81426 -3.26345 1.41183 2.38845 2.69846 3.15446 3.39193 3.43244 3.45445 3.47516 4.42198 4.46975 4.49135 4.61525 4.67041 4.84474 4.85340 5.20087 5.20218 5.29544 5.30328 5.37286 5.44208 5.50606 5.51492 5.53806 5.59445 5.63563 5.65594 5.71110 5.74612 5.77435 5.77812 5.80234 5.89179 5.94988 6.06397 6.09768 6.17732 6.23689 6.28255 6.38771 6.48170 6.54299 6.57706 6.72288 6.81094 6.81459 6.96304 7.23518 7.55378 7.79951 7.94855 8.10794 8.34191 8.44390 9.19174 9.82043 10.39990 11.27585 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.003861 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.344306 B = 7249.962640 C = 8283.799286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.143 4.143 4 C 0.113 3.887 5 N -0.253 5.253 6 N -0.283 5.283 7 C -0.007 4.007 8 C -0.194 4.194 9 C -0.021 4.021 10 C 0.617 3.383 11 O -0.541 6.541 12 N -0.622 5.622 13 C 0.100 3.900 14 C -0.110 4.110 15 C 0.124 3.876 16 C -0.091 4.091 17 C -0.134 4.134 18 C 0.144 3.856 19 N -0.588 5.588 20 C -0.258 4.258 21 H 0.064 0.936 22 C 0.011 3.989 23 N -0.900 5.900 24 Si 0.898 3.102 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.204 3.796 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.124 0.876 37 H 0.094 0.906 38 H 0.184 0.816 39 H 0.162 0.838 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.018 0.982 49 H 0.053 0.947 50 H 0.254 0.746 51 H 0.026 0.974 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 0.130 -16.040 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.201 4.201 4 C -0.007 4.007 5 N -0.041 5.041 6 N -0.115 5.115 7 C -0.183 4.183 8 C -0.222 4.222 9 C -0.150 4.150 10 C 0.406 3.594 11 O -0.420 6.420 12 N -0.355 5.355 13 C -0.024 4.024 14 C -0.112 4.112 15 C 0.002 3.998 16 C -0.129 4.129 17 C -0.173 4.173 18 C 0.017 3.983 19 N -0.310 5.310 20 C -0.388 4.388 21 H 0.081 0.919 22 C -0.188 4.188 23 N -0.543 5.543 24 Si 0.727 3.273 25 H -0.208 1.208 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.077 3.923 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.112 0.888 38 H 0.201 0.799 39 H 0.179 0.821 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.036 0.964 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.044 0.956 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.368 1.567 -16.383 16.462 hybrid contribution -0.121 0.121 0.697 0.718 sum -0.489 1.688 -15.686 15.784 Atomic orbital electron populations 1.21889 0.94233 1.02010 1.02300 1.21409 0.97159 0.96644 0.97116 1.21757 1.00983 0.94717 1.02666 1.22448 1.02058 0.74230 1.01962 1.45699 1.15838 1.08517 1.34012 1.73143 1.22613 0.98537 1.17221 1.23520 0.95664 0.96077 1.03054 1.22472 1.01588 0.94456 1.03730 1.21364 0.94358 0.93963 1.05285 1.16239 0.79881 0.84958 0.78349 1.90738 1.76477 1.15228 1.59536 1.49083 1.19318 1.11519 1.55618 1.23373 0.97494 0.83602 0.97919 1.22770 0.97079 0.94524 0.96871 1.23002 0.83713 0.99456 0.93609 1.21212 0.93909 0.99841 0.97966 1.22026 0.97662 1.00623 0.97030 1.20905 0.87112 0.95906 0.94334 1.43943 1.11613 1.50820 1.24596 1.19050 0.91829 1.11124 1.16766 0.91870 1.25086 0.97743 0.97161 0.98824 1.69980 1.04730 1.29733 1.49835 0.86447 0.78003 0.83003 0.79821 1.20763 1.21644 1.20859 1.20366 0.92587 0.98497 0.80812 0.92858 0.93336 0.90999 0.90678 0.92360 0.91983 0.91857 0.85797 0.88773 0.79912 0.82095 0.89981 0.89976 0.89340 0.90730 0.93012 0.91840 0.92950 0.92324 0.96386 0.92813 0.93574 0.95628 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.06 37.16 0.30 -1.57 16 2 C -0.10 -1.20 3.12 -90.62 -0.28 -1.48 16 3 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 4 C 0.11 1.53 5.42 -4.04 -0.02 1.51 16 5 N -0.25 -3.91 3.07 -57.15 -0.18 -4.08 16 6 N -0.28 -4.23 11.90 30.59 0.36 -3.87 16 7 C -0.01 -0.10 12.03 -17.43 -0.21 -0.31 16 8 C -0.19 -2.72 10.15 -38.99 -0.40 -3.11 16 9 C -0.02 -0.35 5.78 -82.06 -0.47 -0.82 16 10 C 0.62 11.25 7.38 -12.64 -0.09 11.16 16 11 O -0.54 -11.00 13.54 5.25 0.07 -10.93 16 12 N -0.62 -10.53 3.48 -186.26 -0.65 -11.18 16 13 C 0.10 1.39 6.19 -8.01 -0.05 1.34 16 14 C -0.11 -1.81 0.96 -154.87 -0.15 -1.96 16 15 C 0.12 2.09 7.54 -8.19 -0.06 2.03 16 16 C -0.09 -1.27 5.11 -26.88 -0.14 -1.41 16 17 C -0.13 -2.06 6.03 -26.56 -0.16 -2.22 16 18 C 0.14 2.80 6.46 -3.75 -0.02 2.78 16 19 N -0.59 -13.92 2.99 -172.52 -0.52 -14.44 16 20 C -0.26 -6.93 9.56 -15.06 -0.14 -7.07 16 21 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 22 C 0.01 0.32 4.93 -17.43 -0.09 0.23 16 23 N -0.90 -25.98 11.39 55.49 0.63 -25.35 16 24 Si 0.90 22.15 29.58 -169.99 -5.03 17.12 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 28 C 0.20 4.50 4.39 -3.86 -0.02 4.49 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.70 6.29 -51.93 -0.33 0.37 16 31 H 0.07 1.02 7.13 -51.93 -0.37 0.65 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.12 1.90 5.89 -51.93 -0.31 1.60 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 39 H 0.16 1.91 5.42 -52.49 -0.28 1.63 16 40 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.08 1.12 6.41 -51.93 -0.33 0.79 16 42 H 0.09 1.80 8.11 -51.93 -0.42 1.38 16 43 H 0.07 1.06 8.06 -51.93 -0.42 0.65 16 44 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.94 8.03 -51.93 -0.42 0.52 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 50 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 51 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 52 H 0.08 2.21 6.22 -51.93 -0.32 1.89 16 LS Contribution 400.91 15.07 6.04 6.04 Total: -1.00 -31.69 400.91 -9.57 -41.27 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.65 Total: 2.82 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.66 Total: 2.60 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.34 Total: -58.92 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.69 -9.57 -41.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981795831.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.417 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds