Wall clock time and date at job start Wed Apr 1 2020 04:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46962 * 2 1 4 4 C 1.52999 * 109.47085 * 120.00257 * 2 1 3 5 5 N 1.46497 * 109.47511 * 65.87237 * 4 2 1 6 6 N 1.28447 * 125.18681 * 83.34943 * 5 4 2 7 7 C 1.30866 * 110.92647 * 180.02562 * 6 5 4 8 8 C 1.39669 * 107.85868 * 359.97438 * 7 6 5 9 9 C 1.36593 * 125.19344 * 263.37078 * 5 4 2 10 10 C 1.47158 * 126.88126 * 359.94284 * 9 5 4 11 11 O 1.21629 * 120.00320 * 356.44796 * 10 9 5 12 12 N 1.34778 * 119.99759 * 176.44567 * 10 9 5 13 13 C 1.47202 * 135.99918 * 4.99963 * 12 10 9 14 14 C 1.53207 * 87.73225 * 153.42574 * 13 12 10 15 15 C 1.47161 * 135.99718 * 185.36652 * 12 10 9 16 16 C 1.52509 * 114.05459 * 139.66543 * 14 13 12 17 17 C 1.53191 * 109.36900 * 190.01795 * 16 14 13 18 18 C 1.53141 * 109.35985 * 301.11415 * 17 16 14 19 19 N 1.46896 * 109.07668 * 56.56725 * 18 17 16 20 20 C 1.36937 * 120.69979 * 124.52683 * 19 18 17 21 21 H 1.07998 * 120.00238 * 328.84868 * 20 19 18 22 22 C 1.38814 * 120.00481 * 148.85618 * 20 19 18 23 23 N 1.31625 * 119.99707 * 344.58999 * 22 20 19 24 24 Si 1.86800 * 120.00473 * 164.59828 * 22 20 19 25 25 H 1.48497 * 109.47316 * 59.99346 * 24 22 20 26 26 H 1.48493 * 109.47255 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46809 * 299.99913 * 24 22 20 28 28 C 1.47142 * 118.60669 * 304.54489 * 19 18 17 29 29 H 1.08994 * 109.47638 * 62.90658 * 1 2 3 30 30 H 1.09005 * 109.46830 * 182.90709 * 1 2 3 31 31 H 1.08997 * 109.46856 * 302.90356 * 1 2 3 32 32 H 1.09003 * 109.46623 * 239.99829 * 2 1 3 33 33 H 1.08999 * 109.47003 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46856 * 299.99972 * 3 2 1 35 35 H 1.08996 * 109.47610 * 60.00026 * 3 2 1 36 36 H 1.08995 * 109.46946 * 305.87018 * 4 2 1 37 37 H 1.09003 * 109.46721 * 185.87355 * 4 2 1 38 38 H 1.08001 * 126.06698 * 179.73415 * 7 6 5 39 39 H 1.08001 * 127.31909 * 180.02562 * 8 7 6 40 40 H 1.09003 * 113.48724 * 268.11455 * 13 12 10 41 41 H 1.08998 * 113.48588 * 38.62493 * 13 12 10 42 42 H 1.08998 * 113.48849 * 321.37513 * 15 12 10 43 43 H 1.08998 * 113.48836 * 91.88161 * 15 12 10 44 44 H 1.08999 * 109.49041 * 309.98761 * 16 14 13 45 45 H 1.08998 * 109.49127 * 70.05233 * 16 14 13 46 46 H 1.09004 * 109.49282 * 181.14197 * 17 16 14 47 47 H 1.09003 * 109.48603 * 61.07679 * 17 16 14 48 48 H 1.09006 * 109.53454 * 296.68760 * 18 17 16 49 49 H 1.08997 * 109.53905 * 176.44713 * 18 17 16 50 50 H 0.96996 * 119.99786 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.63418 * 291.52741 * 28 19 18 52 52 H 1.08999 * 109.80766 * 171.01928 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6706 -2.1373 1.1807 6 7 2.3272 -3.0439 0.5509 7 6 1.7481 -4.2110 0.6739 8 6 0.6062 -4.0418 1.4602 9 6 0.5750 -2.6947 1.7763 10 6 -0.4353 -2.0020 2.5918 11 8 -0.3050 -0.8198 2.8465 12 7 -1.5050 -2.6775 3.0564 13 6 -1.9593 -4.0776 3.0462 14 6 -2.7406 -3.7697 4.3276 15 6 -2.7342 -2.3379 3.7908 16 6 -4.1234 -4.4107 4.3819 17 6 -4.9016 -3.8402 5.5717 18 6 -4.1298 -4.1204 6.8644 19 7 -2.7800 -3.5521 6.7505 20 6 -2.3145 -2.6639 7.6830 21 1 -3.0012 -1.9986 8.1851 22 6 -0.9599 -2.6184 7.9828 23 7 -0.1711 -3.6060 7.6154 24 14 -0.2564 -1.1560 8.9079 25 1 -0.9208 -1.0410 10.2310 26 1 1.2030 -1.3487 9.1024 27 1 -0.4926 0.0843 8.1261 28 6 -1.9388 -3.9570 5.6132 29 1 -0.3634 0.4680 -0.9148 30 1 -0.3633 -1.0264 0.0521 31 1 -0.3633 0.5582 0.8628 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9563 0.8899 36 1 1.5934 -0.2718 2.1360 37 1 3.1250 -0.6311 1.3033 38 1 2.0901 -5.1393 0.2407 39 1 -0.1020 -4.8008 1.7581 40 1 -2.5971 -4.3212 2.1965 41 1 -1.1530 -4.7970 3.1892 42 1 -2.5841 -1.5846 4.5642 43 1 -3.5803 -2.1136 3.1414 44 1 -4.6609 -4.1946 3.4585 45 1 -4.0198 -5.4894 4.4988 46 1 -5.8829 -4.3119 5.6244 47 1 -5.0213 -2.7641 5.4456 48 1 -4.0601 -5.1969 7.0213 49 1 -4.6489 -3.6611 7.7057 50 1 0.7755 -3.5741 7.8245 51 1 -1.6578 -5.0047 5.7202 52 1 -1.0417 -3.3389 5.5788 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981795831.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:01 Heat of formation + Delta-G solvation = 79.322401 kcal Electronic energy + Delta-G solvation = -32491.398862 eV Core-core repulsion = 28493.710422 eV Total energy + Delta-G solvation = -3997.688440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.60645 -41.79293 -39.43880 -37.67915 -37.25900 -34.73157 -33.13965 -32.57975 -31.89933 -30.97273 -28.24427 -27.91389 -27.47390 -27.10439 -27.01247 -24.03966 -23.72857 -22.65377 -22.08215 -21.40952 -20.34667 -19.51875 -18.56726 -18.34361 -17.61254 -17.30106 -16.78011 -16.62867 -16.43000 -16.04342 -15.78656 -15.28027 -15.18528 -15.00715 -14.76260 -14.65676 -14.50291 -14.44232 -14.13929 -13.86880 -13.66813 -13.44419 -13.20362 -13.10913 -12.94634 -12.91566 -12.71854 -12.59697 -12.34195 -12.32432 -12.07409 -12.03316 -11.93163 -11.84896 -11.70843 -11.45806 -11.29057 -10.94886 -10.80237 -10.55820 -10.28313 -10.01868 -9.66887 -8.62413 -7.91618 -5.36856 0.20713 1.25651 1.36179 1.40997 1.44534 1.64075 1.95164 2.14857 2.44782 3.20363 3.24176 3.37480 3.44968 3.65312 3.82075 3.88648 3.92544 4.02073 4.09541 4.15442 4.33581 4.34501 4.37415 4.39150 4.45884 4.52086 4.56781 4.60633 4.64663 4.66837 4.75757 4.79789 4.80056 4.89071 4.91691 4.95117 5.01032 5.06264 5.11016 5.22725 5.22981 5.27694 5.32376 5.38689 5.51098 5.53491 5.57974 5.69308 5.73271 5.75101 6.38001 6.65111 6.91626 7.08999 7.14520 7.87596 8.37893 9.13394 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.003861 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.344306 B = 7249.962640 C = 8283.799286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.139 4.139 4 C 0.109 3.891 5 N -0.261 5.261 6 N -0.296 5.296 7 C -0.003 4.003 8 C -0.187 4.187 9 C -0.049 4.049 10 C 0.607 3.393 11 O -0.578 6.578 12 N -0.631 5.631 13 C 0.111 3.889 14 C -0.106 4.106 15 C 0.126 3.874 16 C -0.084 4.084 17 C -0.124 4.124 18 C 0.136 3.864 19 N -0.607 5.607 20 C -0.257 4.257 21 H 0.061 0.939 22 C -0.041 4.041 23 N -0.928 5.928 24 Si 0.947 3.053 25 H -0.267 1.267 26 H -0.297 1.297 27 H -0.289 1.289 28 C 0.215 3.785 29 H 0.071 0.929 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.222 0.778 39 H 0.183 0.817 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.018 0.982 49 H 0.046 0.954 50 H 0.246 0.754 51 H 0.003 0.997 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -1.172 -18.719 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.197 4.197 4 C -0.011 4.011 5 N -0.049 5.049 6 N -0.128 5.128 7 C -0.178 4.178 8 C -0.215 4.215 9 C -0.177 4.177 10 C 0.396 3.604 11 O -0.460 6.460 12 N -0.363 5.363 13 C -0.010 4.010 14 C -0.108 4.108 15 C 0.004 3.996 16 C -0.122 4.122 17 C -0.163 4.163 18 C 0.011 3.989 19 N -0.330 5.330 20 C -0.388 4.388 21 H 0.079 0.921 22 C -0.237 4.237 23 N -0.574 5.574 24 Si 0.776 3.224 25 H -0.192 1.192 26 H -0.223 1.223 27 H -0.216 1.216 28 C 0.090 3.910 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.239 0.761 39 H 0.200 0.800 40 H 0.150 0.850 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.036 0.964 49 H 0.064 0.936 50 H 0.055 0.945 51 H 0.021 0.979 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.025 0.241 -19.059 19.168 hybrid contribution 0.326 0.484 1.595 1.698 sum -1.699 0.725 -17.464 17.562 Atomic orbital electron populations 1.21794 0.95167 1.00516 1.02129 1.21367 0.96218 0.97778 0.96055 1.21742 1.01866 0.93096 1.02962 1.22511 1.02639 0.73986 1.01978 1.45855 1.15780 1.09042 1.34210 1.73138 1.22964 0.99202 1.17528 1.24186 0.94821 0.96726 1.02089 1.22816 1.02119 0.93708 1.02881 1.21355 0.94851 0.95067 1.06443 1.16628 0.80454 0.84829 0.78446 1.90709 1.77327 1.16864 1.61064 1.49248 1.19043 1.12961 1.55071 1.23557 0.97618 0.81981 0.97880 1.22438 0.98491 0.94924 0.94986 1.23055 0.85020 0.98233 0.93325 1.21242 0.91706 1.00047 0.99180 1.21909 0.98741 1.00733 0.94947 1.21116 0.85329 0.95435 0.96974 1.44214 1.13244 1.50806 1.24741 1.19345 0.91883 1.11171 1.16406 0.92108 1.25674 0.98329 0.99161 1.00516 1.70117 1.04218 1.31278 1.51744 0.85640 0.77038 0.80299 0.79381 1.19242 1.22285 1.21604 1.20010 0.91858 0.95709 0.83466 0.90966 0.95231 0.93238 0.90236 0.90959 0.90416 0.92789 0.88375 0.87490 0.76143 0.79963 0.85027 0.89751 0.94159 0.86926 0.88650 0.90642 0.89378 0.93039 0.96380 0.93571 0.94533 0.97931 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.06 71.98 0.58 -2.98 16 2 C -0.09 -2.17 3.12 -10.79 -0.03 -2.20 16 3 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 4 C 0.11 3.03 5.42 86.38 0.47 3.50 16 5 N -0.26 -8.10 3.07 -334.71 -1.03 -9.13 16 6 N -0.30 -8.51 11.90 -57.14 -0.68 -9.19 16 7 C 0.00 -0.07 12.03 85.18 1.02 0.96 16 8 C -0.19 -4.89 10.15 22.66 0.23 -4.66 16 9 C -0.05 -1.61 5.78 40.79 0.24 -1.38 16 10 C 0.61 22.83 7.38 86.59 0.64 23.47 16 11 O -0.58 -25.09 13.54 -4.12 -0.06 -25.14 16 12 N -0.63 -21.18 3.48 -861.45 -3.00 -24.18 16 13 C 0.11 2.80 6.19 83.43 0.52 3.32 16 14 C -0.11 -3.32 0.96 -52.41 -0.05 -3.37 16 15 C 0.13 4.16 7.54 83.34 0.63 4.79 16 16 C -0.08 -1.98 5.11 30.50 0.16 -1.83 16 17 C -0.12 -3.42 6.03 30.71 0.19 -3.24 16 18 C 0.14 5.22 6.46 86.35 0.56 5.78 16 19 N -0.61 -29.41 2.99 -699.73 -2.09 -31.50 16 20 C -0.26 -14.30 9.56 84.03 0.80 -13.50 16 21 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 22 C -0.04 -2.34 4.93 84.86 0.42 -1.92 16 23 N -0.93 -56.27 11.39 21.65 0.25 -56.02 16 24 Si 0.95 47.42 29.58 68.60 2.03 49.45 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 27 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 28 C 0.22 9.79 4.39 86.15 0.38 10.16 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 0.85 6.29 -2.38 -0.02 0.84 16 31 H 0.05 1.48 7.13 -2.39 -0.02 1.46 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 3.27 5.89 -2.39 -0.01 3.26 16 37 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 39 H 0.18 3.79 5.42 -2.91 -0.02 3.78 16 40 H 0.13 2.13 8.10 -2.39 -0.02 2.11 16 41 H 0.08 2.11 6.41 -2.39 -0.02 2.10 16 42 H 0.04 1.71 8.11 -2.39 -0.02 1.70 16 43 H 0.11 2.88 8.06 -2.39 -0.02 2.86 16 44 H 0.10 1.56 8.09 -2.39 -0.02 1.54 16 45 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 48 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 49 H 0.05 1.79 7.93 -2.39 -0.02 1.77 16 50 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 51 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 52 H 0.04 1.96 6.22 -2.39 -0.01 1.94 16 Total: -1.00 -75.74 400.91 3.73 -72.02 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.90 Total: 18.61 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 7.40 Total: 15.09 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -6.55 Total: -130.02 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.14 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -75.74 3.73 -72.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981795831.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.338 kcal (2) G-P(sol) polarization free energy of solvation -75.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds