Wall clock time and date at job start Wed Apr 1 2020 04:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47261 * 2 1 4 4 C 1.53005 * 109.46897 * 240.00038 * 2 1 3 5 5 N 1.46493 * 109.46922 * 120.00655 * 2 1 3 6 6 C 1.35037 * 124.88976 * 74.96932 * 5 2 1 7 7 C 1.35361 * 107.22998 * 179.72493 * 6 5 2 8 8 C 1.41501 * 105.50561 * 0.41867 * 7 6 5 9 9 C 1.47714 * 126.52368 * 179.84357 * 8 7 6 10 10 O 1.21574 * 119.99290 * 359.71098 * 9 8 7 11 11 N 1.34771 * 120.00137 * 179.71008 * 9 8 7 12 12 C 1.47677 * 134.45047 * 179.97438 * 11 9 8 13 13 C 1.53444 * 85.96941 * 155.71345 * 12 11 9 14 14 C 1.47665 * 134.45637 * 0.02562 * 11 9 8 15 15 C 1.52628 * 113.71744 * 268.85066 * 13 12 11 16 16 C 1.53186 * 109.35647 * 171.27591 * 15 13 12 17 17 C 1.52669 * 109.42823 * 58.92861 * 16 15 13 18 18 N 1.46895 * 109.34484 * 303.77394 * 17 16 15 19 19 C 1.36941 * 120.68886 * 235.30832 * 18 17 16 20 20 H 1.07999 * 120.00331 * 151.85862 * 19 18 17 21 21 C 1.38812 * 120.00065 * 331.87001 * 19 18 17 22 22 N 1.31627 * 119.99737 * 335.04228 * 21 19 18 23 23 Si 1.86800 * 120.00421 * 155.04594 * 21 19 18 24 24 H 1.48499 * 109.46785 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47247 * 119.99720 * 23 21 19 26 26 H 1.48498 * 109.47104 * 239.99637 * 23 21 19 27 27 C 1.47110 * 118.62431 * 55.03629 * 18 17 16 28 28 N 1.28478 * 124.88313 * 254.97325 * 5 2 1 29 29 H 1.09001 * 109.47158 * 299.99881 * 1 2 3 30 30 H 1.09006 * 109.47167 * 59.99483 * 1 2 3 31 31 H 1.08991 * 109.47377 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46657 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47328 * 300.00097 * 3 2 1 34 34 H 1.08999 * 109.46686 * 60.00463 * 3 2 1 35 35 H 1.08996 * 109.46898 * 300.00447 * 4 2 1 36 36 H 1.09006 * 109.46820 * 60.00267 * 4 2 1 37 37 H 1.08995 * 109.47149 * 180.02562 * 4 2 1 38 38 H 1.07993 * 126.38575 * 0.02562 * 6 5 2 39 39 H 1.08003 * 127.25110 * 180.25599 * 7 6 5 40 40 H 1.08997 * 113.79514 * 41.45269 * 12 11 9 41 41 H 1.08994 * 113.79584 * 269.97738 * 12 11 9 42 42 H 1.09002 * 113.79643 * 90.02067 * 14 11 9 43 43 H 1.09000 * 113.79467 * 318.54909 * 14 11 9 44 44 H 1.09002 * 109.49357 * 291.24383 * 15 13 12 45 45 H 1.09005 * 109.49027 * 51.31330 * 15 13 12 46 46 H 1.08998 * 109.49150 * 179.03004 * 16 15 13 47 47 H 1.09005 * 109.48818 * 299.09987 * 16 15 13 48 48 H 1.08998 * 109.43757 * 183.78551 * 17 16 15 49 49 H 1.09004 * 109.36592 * 63.70916 * 17 16 15 50 50 H 0.96996 * 119.99632 * 354.27097 * 22 21 19 51 51 H 1.09002 * 109.63459 * 68.57930 * 27 18 17 52 52 H 1.09000 * 109.64288 * 189.19161 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1960 6 6 2.0049 -2.0292 1.3746 7 6 2.5409 -2.2765 2.5927 8 6 2.8631 -1.0074 3.1290 9 6 3.4732 -0.7392 4.4473 10 8 3.7429 -1.6621 5.1912 11 7 3.7307 0.5286 4.8253 12 6 4.3143 1.1498 6.0313 13 6 4.6776 2.3272 5.1168 14 6 3.5415 1.8529 4.2001 15 6 6.0632 2.2110 4.4875 16 6 6.2372 3.3112 3.4359 17 6 6.0649 4.6768 4.0964 18 7 4.7567 4.7337 4.7622 19 6 3.8648 5.7299 4.4667 20 1 2.8044 5.5539 4.5711 21 6 4.3236 6.9661 4.0327 22 7 5.5353 7.3680 4.3537 23 14 3.2217 8.0592 2.9934 24 1 1.9186 7.3819 2.7732 25 1 2.9977 9.3478 3.6965 26 1 3.8729 8.3165 1.6839 27 6 4.4222 3.6948 5.7486 28 7 2.5208 -0.1102 2.2261 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1299 -0.7217 -1.2491 38 1 1.6396 -2.7653 0.6740 39 1 2.6887 -3.2397 3.0586 40 1 5.1791 0.6166 6.4260 41 1 3.5798 1.3983 6.7972 42 1 2.5773 2.3103 4.4220 43 1 3.7922 1.8784 3.1396 44 1 6.8241 2.3227 5.2600 45 1 6.1665 1.2350 4.0132 46 1 7.2325 3.2409 2.9972 47 1 5.4860 3.1903 2.6554 48 1 6.1217 5.4568 3.3371 49 1 6.8552 4.8247 4.8324 50 1 6.0765 6.8396 4.9609 51 1 5.0496 3.8130 6.6321 52 1 3.3719 3.7791 6.0276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981801431.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:08 Heat of formation + Delta-G solvation = 97.097776 kcal Electronic energy + Delta-G solvation = -32167.883371 eV Core-core repulsion = 28170.965728 eV Total energy + Delta-G solvation = -3996.917642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.79596 -40.40841 -38.15211 -37.00061 -35.95292 -32.79414 -31.20676 -30.99615 -30.53769 -29.53108 -27.91136 -27.62004 -26.15515 -25.93384 -25.16622 -23.47666 -22.30397 -21.80803 -20.60061 -19.86123 -19.00101 -17.82833 -17.36203 -17.32511 -16.46462 -16.19120 -15.58806 -15.42452 -14.63364 -14.46291 -14.22318 -14.07592 -13.89391 -13.81058 -13.59353 -13.48493 -13.22293 -13.08836 -12.84050 -12.70270 -12.59325 -12.39250 -12.29780 -12.16690 -11.86379 -11.70499 -11.56462 -11.50044 -11.33101 -11.00829 -10.78453 -10.70187 -10.37952 -10.19590 -10.10546 -9.96971 -9.76417 -9.67682 -9.27713 -9.24161 -9.11557 -8.42016 -8.33024 -6.86182 -6.05937 -3.22586 1.66943 2.10511 2.25698 3.06194 3.49735 3.52279 3.59233 3.65430 4.00880 4.30170 4.41308 4.44969 4.56085 4.62021 4.72308 4.95524 5.00645 5.14531 5.17707 5.21710 5.28104 5.28815 5.34003 5.40144 5.46417 5.51846 5.52870 5.60452 5.66887 5.68441 5.71240 5.73770 5.82096 5.83895 5.98966 6.02789 6.05654 6.11528 6.22415 6.38464 6.43072 6.47818 6.53044 6.64168 6.71227 6.75101 6.79393 7.11006 7.22851 7.87644 7.92696 8.00893 8.39385 8.58468 9.11906 9.85042 10.30299 11.22436 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010010 B = 0.003808 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.487543 B = 7351.666326 C = 9303.049116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.158 4.158 5 N -0.273 5.273 6 C -0.023 4.023 7 C -0.182 4.182 8 C -0.015 4.015 9 C 0.621 3.379 10 O -0.549 6.549 11 N -0.628 5.628 12 C 0.116 3.884 13 C -0.106 4.106 14 C 0.136 3.864 15 C -0.082 4.082 16 C -0.135 4.135 17 C 0.150 3.850 18 N -0.595 5.595 19 C -0.346 4.346 20 H 0.056 0.944 21 C -0.023 4.023 22 N -0.917 5.917 23 Si 1.066 2.934 24 H -0.292 1.292 25 H -0.294 1.294 26 H -0.291 1.291 27 C 0.165 3.835 28 N -0.243 5.243 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.015 0.985 50 H 0.270 0.730 51 H 0.022 0.978 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.491 -16.723 -10.264 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 C -0.207 4.207 4 C -0.216 4.216 5 N -0.063 5.063 6 C -0.165 4.165 7 C -0.210 4.210 8 C -0.175 4.175 9 C 0.409 3.591 10 O -0.426 6.426 11 N -0.362 5.362 12 C -0.006 4.006 13 C -0.108 4.108 14 C 0.014 3.986 15 C -0.119 4.119 16 C -0.174 4.174 17 C 0.024 3.976 18 N -0.318 5.318 19 C -0.475 4.475 20 H 0.074 0.926 21 C -0.225 4.225 22 N -0.557 5.557 23 Si 0.896 3.104 24 H -0.219 1.219 25 H -0.222 1.222 26 H -0.218 1.218 27 C 0.038 3.962 28 N -0.079 5.079 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.193 0.807 39 H 0.176 0.824 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.033 0.967 50 H 0.081 0.919 51 H 0.040 0.960 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.536 -14.737 -11.093 19.926 hybrid contribution -0.100 -2.482 0.955 2.661 sum -7.637 -17.219 -10.137 21.391 Atomic orbital electron populations 1.22247 0.92274 1.03195 1.03977 1.21064 0.94999 0.94289 0.81074 1.21986 1.02645 0.92099 1.03923 1.22232 1.02610 1.00902 0.95899 1.45899 1.42501 1.04721 1.13167 1.22670 1.07453 0.86496 0.99886 1.21719 1.05638 0.98595 0.95083 1.21886 1.08109 0.91438 0.96102 1.16547 0.77302 0.81433 0.83802 1.90756 1.54430 1.43405 1.53973 1.49966 1.60946 1.04612 1.20683 1.23258 0.97348 0.90865 0.89178 1.22630 0.95935 0.96228 0.96038 1.23161 0.98290 0.77765 0.99341 1.21090 0.94257 0.98300 0.98288 1.21980 0.99992 0.97453 0.97976 1.20830 0.86887 0.94320 0.95605 1.44080 1.16168 1.28283 1.43302 1.19977 0.88876 0.92106 1.46523 0.92647 1.25774 0.99941 0.95014 1.01793 1.70712 1.11809 1.38884 1.34316 0.83518 0.74648 0.75513 0.76678 1.21867 1.22178 1.21752 1.20768 0.98654 0.85774 0.91021 1.73646 1.12953 1.26084 0.95203 0.91252 0.89915 0.91702 0.91241 0.90474 0.90310 0.91481 0.89691 0.91263 0.80694 0.82406 0.90303 0.89708 0.89992 0.89603 0.92171 0.93145 0.93034 0.92379 0.90238 0.96675 0.91891 0.96015 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.70 37.16 0.32 -0.77 16 2 C 0.17 1.41 1.21 -131.82 -0.16 1.25 16 3 C -0.15 -1.43 8.01 37.16 0.30 -1.13 16 4 C -0.16 -0.94 8.27 37.16 0.31 -0.64 16 5 N -0.27 -3.13 3.16 -48.62 -0.15 -3.28 16 6 C -0.02 -0.23 10.52 -17.17 -0.18 -0.42 16 7 C -0.18 -2.38 10.81 -39.37 -0.43 -2.80 16 8 C -0.02 -0.25 7.09 -82.76 -0.59 -0.83 16 9 C 0.62 11.12 8.06 -12.39 -0.10 11.02 16 10 O -0.55 -11.07 17.65 5.30 0.09 -10.98 16 11 N -0.63 -10.56 3.45 -181.63 -0.63 -11.18 16 12 C 0.12 1.80 7.97 -3.18 -0.03 1.77 16 13 C -0.11 -1.79 0.87 -154.42 -0.13 -1.92 16 14 C 0.14 2.30 6.88 -3.16 -0.02 2.27 16 15 C -0.08 -1.38 5.03 -26.83 -0.13 -1.51 16 16 C -0.13 -2.49 5.99 -26.80 -0.16 -2.65 16 17 C 0.15 3.36 4.62 -4.00 -0.02 3.34 16 18 N -0.59 -14.08 2.86 -172.75 -0.49 -14.57 16 19 C -0.35 -9.19 9.50 -15.06 -0.14 -9.34 16 20 H 0.06 1.49 7.94 -52.49 -0.42 1.07 16 21 C -0.02 -0.63 4.69 -17.43 -0.08 -0.72 16 22 N -0.92 -26.75 12.39 55.49 0.69 -26.07 16 23 Si 1.07 24.62 29.99 -169.99 -5.10 19.52 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 27 C 0.16 3.26 5.71 -3.81 -0.02 3.24 16 28 N -0.24 -3.57 9.35 33.42 0.31 -3.25 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.92 7.99 -51.93 -0.42 0.50 16 35 H 0.07 0.32 7.27 -51.93 -0.38 -0.06 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.18 1.12 7.47 -52.49 -0.39 0.73 16 39 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 40 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 41 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 42 H 0.08 1.41 7.97 -51.93 -0.41 1.00 16 43 H 0.09 1.51 6.76 -51.93 -0.35 1.16 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.84 8.02 -51.93 -0.42 0.42 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.06 1.11 7.37 -51.93 -0.38 0.73 16 48 H 0.08 2.03 6.23 -51.93 -0.32 1.70 16 49 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 50 H 0.27 7.95 6.77 -40.82 -0.28 7.67 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 52 H 0.06 1.16 7.78 -51.93 -0.40 0.75 16 LS Contribution 409.24 15.07 6.17 6.17 Total: -1.00 -32.70 409.24 -9.24 -41.94 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -8.87 Total: 1.53 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.27 Total: 0.17 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.27 Total: -58.36 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.70 -9.24 -41.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981801431.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.042 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds