Wall clock time and date at job start Wed Apr 1 2020 04:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47487 * 119.99536 * 2 1 3 5 5 N 1.46499 * 109.47558 * 175.00253 * 4 2 1 6 6 C 1.35027 * 124.88467 * 125.00622 * 5 4 2 7 7 C 1.35363 * 107.22988 * 179.97438 * 6 5 4 8 8 C 1.41505 * 105.50137 * 359.97438 * 7 6 5 9 9 C 1.47705 * 126.51668 * 180.02562 * 8 7 6 10 10 O 1.21576 * 120.00114 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00026 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00377 * 180.02562 * 11 9 8 13 13 C 1.51218 * 111.06189 * 68.33679 * 12 11 9 14 14 C 1.55056 * 104.91612 * 84.41845 * 13 12 11 15 15 C 1.56284 * 105.91393 * 6.66912 * 14 13 12 16 16 C 1.50523 * 101.75945 * 24.64456 * 15 14 13 17 17 H 1.08997 * 108.15445 * 66.93079 * 16 15 14 18 18 N 1.42715 * 127.75691 * 198.94232 * 16 15 14 19 19 C 1.36939 * 127.10192 * 331.42862 * 18 16 15 20 20 H 1.08005 * 119.99794 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99949 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47462 * 59.99418 * 23 21 19 25 25 H 1.48505 * 109.46620 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46835 * 299.98995 * 23 21 19 27 27 C 1.49295 * 105.79628 * 151.44560 * 18 16 15 28 28 C 1.52130 * 111.08032 * 288.30393 * 12 11 9 29 29 N 1.28462 * 124.88122 * 304.98011 * 5 4 2 30 30 H 1.08996 * 109.47145 * 300.00168 * 1 2 3 31 31 H 1.08995 * 109.46864 * 60.00209 * 1 2 3 32 32 H 1.08999 * 109.46614 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47660 * 240.00360 * 2 1 3 34 34 H 1.09009 * 109.47081 * 59.99645 * 3 2 1 35 35 H 1.08993 * 109.47507 * 179.97438 * 3 2 1 36 36 H 1.09006 * 109.47189 * 300.00155 * 3 2 1 37 37 H 1.09005 * 109.46363 * 54.99983 * 4 2 1 38 38 H 1.09003 * 109.47521 * 295.00900 * 4 2 1 39 39 H 1.08000 * 126.38740 * 359.97438 * 6 5 4 40 40 H 1.08000 * 127.25177 * 180.26038 * 7 6 5 41 41 H 0.97002 * 120.00100 * 0.02562 * 11 9 8 42 42 H 1.09000 * 110.40798 * 202.63947 * 13 12 11 43 43 H 1.08994 * 110.41579 * 325.08125 * 13 12 11 44 44 H 1.08997 * 109.85145 * 247.73055 * 14 13 12 45 45 H 1.08996 * 110.55021 * 125.98257 * 14 13 12 46 46 H 1.08999 * 110.97275 * 266.52530 * 15 14 13 47 47 H 1.09008 * 110.97082 * 142.75599 * 15 14 13 48 48 H 0.96996 * 119.99948 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.04453 * 110.59627 * 27 18 16 50 50 H 1.08995 * 110.05090 * 232.07422 * 27 18 16 51 51 H 1.08999 * 111.15210 * 43.93302 * 28 12 11 52 52 H 1.09002 * 111.15018 * 168.16652 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.3450 -0.3872 2.1481 7 6 5.6026 -0.6635 1.7304 8 6 5.4535 -1.2917 0.4712 9 6 6.5400 -1.7876 -0.3978 10 8 7.6987 -1.6723 -0.0481 11 7 6.2470 -2.3680 -1.5783 12 6 7.3246 -2.8604 -2.4401 13 6 8.0141 -4.0546 -1.8194 14 6 7.1441 -5.2726 -2.2240 15 6 6.0716 -4.7217 -3.2184 16 6 6.7587 -3.4986 -3.7640 17 1 7.6156 -3.8249 -4.3533 18 7 6.1625 -2.3831 -4.4250 19 6 5.0148 -2.3823 -5.1719 20 1 4.4594 -3.2983 -5.3095 21 6 4.5657 -1.2044 -5.7531 22 7 5.2428 -0.0882 -5.5858 23 14 2.9997 -1.2032 -6.7714 24 1 1.8601 -1.6442 -5.9276 25 1 2.7391 0.1686 -7.2770 26 1 3.1548 -2.1329 -7.9190 27 6 7.0487 -1.2173 -4.1343 28 6 8.0924 -1.7074 -3.0690 29 7 4.1606 -1.3497 0.2212 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6054 -1.7197 1.2952 38 1 1.7516 -0.1582 2.1370 39 1 4.0689 0.0945 3.0744 40 1 6.5253 -0.4534 2.2509 41 1 5.3226 -2.4596 -1.8575 42 1 9.0189 -4.1674 -2.2265 43 1 8.0518 -3.9507 -0.7351 44 1 6.6589 -5.6903 -1.3419 45 1 7.7536 -6.0329 -2.7123 46 1 5.1548 -4.4528 -2.6938 47 1 5.8688 -5.4415 -4.0115 48 1 4.9292 0.7348 -5.9923 49 1 7.5654 -0.9053 -5.0420 50 1 6.4603 -0.3908 -3.7359 51 1 8.2982 -0.9263 -2.3372 52 1 9.0124 -2.0569 -3.5379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990891055.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:36 Heat of formation + Delta-G solvation = 75.623992 kcal Electronic energy + Delta-G solvation = -32533.624161 eV Core-core repulsion = 28535.775345 eV Total energy + Delta-G solvation = -3997.848816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.52671 -40.26808 -37.82629 -36.56482 -34.36033 -32.96248 -32.12864 -31.54426 -30.56021 -29.71624 -27.37203 -26.97573 -26.86790 -25.62360 -24.02439 -23.17609 -21.34069 -20.67937 -20.39479 -19.83970 -19.43308 -18.44812 -17.73395 -16.44762 -16.32864 -16.21071 -15.63432 -15.08870 -14.69171 -14.52279 -14.25935 -14.00660 -13.88685 -13.78392 -13.60146 -13.27587 -13.06705 -12.98373 -12.53733 -12.47278 -12.25669 -12.16318 -11.80866 -11.40893 -11.33455 -11.28481 -11.20237 -11.02101 -10.96515 -10.86483 -10.72735 -10.57635 -10.42661 -10.26815 -9.96703 -9.89622 -9.63189 -9.58231 -9.10542 -9.10019 -8.89241 -8.62041 -8.30019 -6.81339 -5.70138 -3.04308 1.89059 2.31334 2.51842 3.39561 3.44302 3.45263 3.76023 3.93175 4.23268 4.49014 4.53588 4.70812 4.73224 4.79233 4.89100 5.03633 5.20520 5.28768 5.32636 5.36965 5.43956 5.51069 5.52924 5.64832 5.67885 5.70394 5.78223 5.83972 5.89541 5.91370 5.93473 6.04154 6.08245 6.11923 6.14707 6.22751 6.32164 6.41017 6.45483 6.51712 6.55414 6.59742 6.74663 6.86860 6.90855 6.99128 7.31763 7.57059 7.65783 7.83012 7.99918 8.24662 8.32234 8.84141 9.17569 9.84295 10.53888 11.42054 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007596 B = 0.005155 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.320583 B = 5430.245774 C = 7873.159484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.147 4.147 4 C 0.127 3.873 5 N -0.281 5.281 6 C -0.027 4.027 7 C -0.182 4.182 8 C -0.011 4.011 9 C 0.601 3.399 10 O -0.546 6.546 11 N -0.675 5.675 12 C 0.132 3.868 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.159 3.841 17 H 0.023 0.977 18 N -0.584 5.584 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.003 4.003 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.180 3.820 28 C -0.140 4.140 29 N -0.250 5.250 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.409 0.591 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.252 0.748 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.068 0.932 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.519 -2.023 15.812 16.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.204 4.204 4 C 0.006 3.994 5 N -0.069 5.069 6 C -0.169 4.169 7 C -0.210 4.210 8 C -0.172 4.172 9 C 0.385 3.615 10 O -0.423 6.423 11 N -0.325 5.325 12 C 0.044 3.956 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.154 4.154 16 C 0.048 3.952 17 H 0.041 0.959 18 N -0.307 5.307 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.200 4.200 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.056 3.944 28 C -0.179 4.179 29 N -0.085 5.085 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.118 0.882 39 H 0.194 0.806 40 H 0.176 0.824 41 H 0.246 0.754 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.747 -2.123 15.082 16.279 hybrid contribution -0.799 0.461 -0.068 0.925 sum -6.546 -1.662 15.014 16.463 Atomic orbital electron populations 1.21768 0.93755 1.02234 1.02408 1.21468 0.96382 0.97194 0.98191 1.21821 1.01600 0.95086 1.01917 1.22128 0.73856 1.02790 1.00592 1.45527 1.07544 1.41152 1.12667 1.22774 0.90022 1.06729 0.97411 1.21723 0.97706 1.05226 0.96373 1.22128 0.90624 1.07038 0.97415 1.16858 0.86401 0.77533 0.80694 1.90727 1.19316 1.58150 1.74125 1.45579 1.10939 1.58322 1.17610 1.21542 0.88942 0.93574 0.91550 1.21757 0.98534 0.93651 1.01106 1.22704 0.96978 0.97359 0.98399 1.21857 0.98102 0.97374 0.98073 1.20848 0.94798 0.89419 0.90113 0.95941 1.43659 1.26302 1.03422 1.57323 1.18945 0.98622 0.94719 1.23339 0.90439 1.24767 0.98897 0.95636 1.00717 1.69908 1.39436 0.98937 1.48177 0.86272 0.83193 0.76561 0.80149 1.21238 1.21729 1.21226 1.22147 0.88774 0.89811 0.93672 1.22922 0.98269 0.97635 0.99040 1.73582 1.05481 1.16386 1.13095 0.92564 0.91658 0.92226 0.88716 0.92880 0.92519 0.91919 0.89059 0.88239 0.80640 0.82402 0.75394 0.91226 0.91117 0.92398 0.91940 0.91607 0.91854 0.93732 0.94778 0.91656 0.91364 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.19 37.16 0.34 -0.81 16 2 C -0.11 -1.17 2.95 -90.62 -0.27 -1.44 16 3 C -0.15 -1.60 9.08 37.16 0.34 -1.27 16 4 C 0.13 1.13 5.79 -4.04 -0.02 1.11 16 5 N -0.28 -3.53 2.86 -61.33 -0.18 -3.70 16 6 C -0.03 -0.31 11.40 -17.17 -0.20 -0.50 16 7 C -0.18 -2.62 10.81 -39.36 -0.43 -3.04 16 8 C -0.01 -0.20 7.13 -82.77 -0.59 -0.79 16 9 C 0.60 11.78 7.13 -12.39 -0.09 11.70 16 10 O -0.55 -11.59 15.08 5.30 0.08 -11.51 16 11 N -0.67 -13.26 4.35 -47.55 -0.21 -13.47 16 12 C 0.13 2.56 0.42 -130.71 -0.05 2.50 16 13 C -0.11 -1.88 6.01 -26.54 -0.16 -2.03 16 14 C -0.12 -1.75 6.91 -23.88 -0.17 -1.91 16 15 C -0.12 -2.03 6.45 -26.21 -0.17 -2.20 16 16 C 0.16 3.29 2.61 -68.71 -0.18 3.11 16 17 H 0.02 0.49 7.99 -51.93 -0.41 0.08 16 18 N -0.58 -14.51 3.10 -162.18 -0.50 -15.01 16 19 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 20 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 21 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 22 N -0.92 -26.73 10.55 55.49 0.59 -26.15 16 23 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 C 0.18 4.45 5.34 -0.33 0.00 4.45 16 28 C -0.14 -2.91 6.26 -25.01 -0.16 -3.07 16 29 N -0.25 -4.09 11.27 33.42 0.38 -3.71 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.30 7.96 -51.93 -0.41 0.89 16 34 H 0.05 0.46 8.14 -51.92 -0.42 0.03 16 35 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.58 8.04 -51.93 -0.42 0.16 16 39 H 0.18 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 41 H 0.41 8.47 7.52 -40.82 -0.31 8.16 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.24 6.84 -51.93 -0.36 0.89 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 47 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.03 0.91 7.98 -51.93 -0.41 0.50 16 50 H 0.07 1.82 7.05 -51.93 -0.37 1.45 16 51 H 0.07 1.47 7.17 -51.93 -0.37 1.10 16 52 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 408.84 15.07 6.16 6.16 Total: -1.00 -32.09 408.84 -9.64 -41.74 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -8.89 Total: 9.53 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.05 Total: -0.71 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.08 Total: -62.05 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.08 Total: -11.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.09 -9.64 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990891055.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.360 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds