Wall clock time and date at job start Wed Apr 1 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47487 * 119.99536 * 2 1 3 5 5 N 1.46499 * 109.47558 * 175.00253 * 4 2 1 6 6 C 1.35027 * 124.88467 * 125.00622 * 5 4 2 7 7 C 1.35363 * 107.22988 * 179.97438 * 6 5 4 8 8 C 1.41505 * 105.50137 * 359.97438 * 7 6 5 9 9 C 1.47705 * 126.51668 * 180.02562 * 8 7 6 10 10 O 1.21576 * 120.00114 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00026 * 180.02562 * 9 8 7 12 12 C 1.46505 * 120.00377 * 180.02562 * 11 9 8 13 13 C 1.51218 * 111.06189 * 68.33679 * 12 11 9 14 14 C 1.55056 * 104.91612 * 84.41845 * 13 12 11 15 15 C 1.56284 * 105.91393 * 6.66912 * 14 13 12 16 16 C 1.50523 * 101.75945 * 24.64456 * 15 14 13 17 17 H 1.08997 * 108.15445 * 66.93079 * 16 15 14 18 18 N 1.42715 * 127.75691 * 198.94232 * 16 15 14 19 19 C 1.36939 * 127.10192 * 331.42862 * 18 16 15 20 20 H 1.08005 * 119.99794 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99949 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47462 * 59.99418 * 23 21 19 25 25 H 1.48505 * 109.46620 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46835 * 299.98995 * 23 21 19 27 27 C 1.49295 * 105.79628 * 151.44560 * 18 16 15 28 28 C 1.52130 * 111.08032 * 288.30393 * 12 11 9 29 29 N 1.28462 * 124.88122 * 304.98011 * 5 4 2 30 30 H 1.08996 * 109.47145 * 300.00168 * 1 2 3 31 31 H 1.08995 * 109.46864 * 60.00209 * 1 2 3 32 32 H 1.08999 * 109.46614 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47660 * 240.00360 * 2 1 3 34 34 H 1.09009 * 109.47081 * 59.99645 * 3 2 1 35 35 H 1.08993 * 109.47507 * 179.97438 * 3 2 1 36 36 H 1.09006 * 109.47189 * 300.00155 * 3 2 1 37 37 H 1.09005 * 109.46363 * 54.99983 * 4 2 1 38 38 H 1.09003 * 109.47521 * 295.00900 * 4 2 1 39 39 H 1.08000 * 126.38740 * 359.97438 * 6 5 4 40 40 H 1.08000 * 127.25177 * 180.26038 * 7 6 5 41 41 H 0.97002 * 120.00100 * 0.02562 * 11 9 8 42 42 H 1.09000 * 110.40798 * 202.63947 * 13 12 11 43 43 H 1.08994 * 110.41579 * 325.08125 * 13 12 11 44 44 H 1.08997 * 109.85145 * 247.73055 * 14 13 12 45 45 H 1.08996 * 110.55021 * 125.98257 * 14 13 12 46 46 H 1.08999 * 110.97275 * 266.52530 * 15 14 13 47 47 H 1.09008 * 110.97082 * 142.75599 * 15 14 13 48 48 H 0.96996 * 119.99948 * 179.97438 * 22 21 19 49 49 H 1.09001 * 110.04453 * 110.59627 * 27 18 16 50 50 H 1.08995 * 110.05090 * 232.07422 * 27 18 16 51 51 H 1.08999 * 111.15210 * 43.93302 * 28 12 11 52 52 H 1.09002 * 111.15018 * 168.16652 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7211 1.2493 5 7 3.5001 -0.8262 1.1906 6 6 4.3450 -0.3872 2.1481 7 6 5.6026 -0.6635 1.7304 8 6 5.4535 -1.2917 0.4712 9 6 6.5400 -1.7876 -0.3978 10 8 7.6987 -1.6723 -0.0481 11 7 6.2470 -2.3680 -1.5783 12 6 7.3246 -2.8604 -2.4401 13 6 8.0141 -4.0546 -1.8194 14 6 7.1441 -5.2726 -2.2240 15 6 6.0716 -4.7217 -3.2184 16 6 6.7587 -3.4986 -3.7640 17 1 7.6156 -3.8249 -4.3533 18 7 6.1625 -2.3831 -4.4250 19 6 5.0148 -2.3823 -5.1719 20 1 4.4594 -3.2983 -5.3095 21 6 4.5657 -1.2044 -5.7531 22 7 5.2428 -0.0882 -5.5858 23 14 2.9997 -1.2032 -6.7714 24 1 1.8601 -1.6442 -5.9276 25 1 2.7391 0.1686 -7.2770 26 1 3.1548 -2.1329 -7.9190 27 6 7.0487 -1.2173 -4.1343 28 6 8.0924 -1.7074 -3.0690 29 7 4.1606 -1.3497 0.2212 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6054 -1.7197 1.2952 38 1 1.7516 -0.1582 2.1370 39 1 4.0689 0.0945 3.0744 40 1 6.5253 -0.4534 2.2509 41 1 5.3226 -2.4596 -1.8575 42 1 9.0189 -4.1674 -2.2265 43 1 8.0518 -3.9507 -0.7351 44 1 6.6589 -5.6903 -1.3419 45 1 7.7536 -6.0329 -2.7123 46 1 5.1548 -4.4528 -2.6938 47 1 5.8688 -5.4415 -4.0115 48 1 4.9292 0.7348 -5.9923 49 1 7.5654 -0.9053 -5.0420 50 1 6.4603 -0.3908 -3.7359 51 1 8.2982 -0.9263 -2.3372 52 1 9.0124 -2.0569 -3.5379 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990891055.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:35 Heat of formation + Delta-G solvation = 56.369881 kcal Electronic energy + Delta-G solvation = -32534.459082 eV Core-core repulsion = 28535.775345 eV Total energy + Delta-G solvation = -3998.683736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.59299 -41.86645 -39.37319 -37.42319 -36.16962 -34.47838 -33.64496 -33.00942 -31.76989 -31.35161 -28.57550 -28.19974 -27.98498 -27.11544 -25.96866 -24.44081 -22.37101 -22.24665 -21.68160 -21.24798 -20.79470 -19.97678 -18.87899 -18.36109 -17.53299 -17.36563 -17.19834 -16.42096 -16.21138 -15.89047 -15.77433 -15.68045 -15.38281 -15.03857 -14.61495 -14.49303 -14.25419 -14.07806 -13.97147 -13.93587 -13.51694 -13.16225 -13.06188 -12.97606 -12.90520 -12.86829 -12.62992 -12.24385 -12.21906 -12.13371 -12.07424 -12.01618 -11.94186 -11.81388 -11.58361 -11.56702 -11.37012 -11.17224 -10.78431 -10.67884 -10.21258 -10.01586 -9.80396 -8.87528 -7.83864 -5.19443 0.64758 1.27394 1.43758 1.46835 1.52653 1.61632 2.31948 2.49356 2.51823 3.08542 3.34756 3.37069 3.70703 3.77464 3.81738 3.89079 3.94884 4.08357 4.09764 4.15185 4.27346 4.37761 4.41521 4.43663 4.52983 4.56764 4.59637 4.62315 4.72802 4.77935 4.80435 4.83395 4.87125 4.92933 4.94623 4.97775 5.06281 5.10459 5.18870 5.22336 5.26655 5.26910 5.35149 5.42675 5.48130 5.54789 5.59414 5.66847 5.79388 5.98730 6.17568 6.60554 7.00798 7.03890 7.31542 7.76601 8.49340 9.27893 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007596 B = 0.005155 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3685.320583 B = 5430.245774 C = 7873.159484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.112 4.112 3 C -0.143 4.143 4 C 0.120 3.880 5 N -0.273 5.273 6 C 0.001 3.999 7 C -0.204 4.204 8 C -0.049 4.049 9 C 0.597 3.403 10 O -0.570 6.570 11 N -0.678 5.678 12 C 0.136 3.864 13 C -0.107 4.107 14 C -0.101 4.101 15 C -0.111 4.111 16 C 0.147 3.853 17 H 0.025 0.975 18 N -0.597 5.597 19 C -0.231 4.231 20 H 0.087 0.913 21 C -0.063 4.063 22 N -0.951 5.951 23 Si 0.972 3.028 24 H -0.276 1.276 25 H -0.299 1.299 26 H -0.277 1.277 27 C 0.193 3.807 28 C -0.128 4.128 29 N -0.279 5.279 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.024 0.976 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.147 0.853 39 H 0.230 0.770 40 H 0.164 0.836 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.244 0.756 49 H 0.003 0.997 50 H 0.024 0.976 51 H 0.056 0.944 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.269 -3.494 18.383 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.201 4.201 4 C 0.001 3.999 5 N -0.062 5.062 6 C -0.142 4.142 7 C -0.232 4.232 8 C -0.208 4.208 9 C 0.383 3.617 10 O -0.449 6.449 11 N -0.326 5.326 12 C 0.048 3.952 13 C -0.145 4.145 14 C -0.139 4.139 15 C -0.149 4.149 16 C 0.038 3.962 17 H 0.042 0.958 18 N -0.320 5.320 19 C -0.359 4.359 20 H 0.104 0.896 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.801 3.199 24 H -0.202 1.202 25 H -0.226 1.226 26 H -0.203 1.203 27 C 0.068 3.932 28 C -0.167 4.167 29 N -0.116 5.116 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.123 0.877 38 H 0.165 0.835 39 H 0.246 0.754 40 H 0.181 0.819 41 H 0.237 0.763 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.021 0.979 50 H 0.043 0.957 51 H 0.075 0.925 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.495 -3.645 17.659 19.527 hybrid contribution -0.303 0.974 -0.841 1.322 sum -7.798 -2.672 16.818 18.729 Atomic orbital electron populations 1.21725 0.91517 1.03000 1.03268 1.21393 0.98165 0.96303 0.97249 1.21799 0.99442 0.95918 1.02922 1.22548 0.71633 1.04202 1.01487 1.45939 1.08933 1.39476 1.11853 1.23479 0.88443 1.04220 0.98011 1.21961 0.99586 1.06043 0.95595 1.22005 0.90697 1.09384 0.98669 1.17222 0.86899 0.76905 0.80651 1.90685 1.20374 1.59126 1.74696 1.45619 1.10454 1.58700 1.17844 1.21592 0.88708 0.93510 0.91355 1.21756 0.99492 0.92811 1.00480 1.22642 0.96070 0.96851 0.98381 1.21862 0.98339 0.95973 0.98755 1.21079 0.95104 0.89801 0.90248 0.95812 1.43777 1.25929 1.04740 1.57589 1.19330 0.99079 0.94897 1.22636 0.89569 1.25576 1.02069 0.95440 1.02493 1.70143 1.41066 0.99234 1.49518 0.85244 0.79811 0.76055 0.78801 1.20234 1.22591 1.20260 1.21792 0.88911 0.89309 0.93160 1.22782 0.98074 0.98141 0.97707 1.73518 1.05386 1.17796 1.14934 0.89665 0.92831 0.91532 0.93377 0.89484 0.95708 0.93326 0.87748 0.83476 0.75350 0.81855 0.76253 0.89622 0.91810 0.90914 0.89160 0.92622 0.90733 0.94683 0.97865 0.95734 0.92506 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.11 -2.21 2.95 -10.79 -0.03 -2.24 16 3 C -0.14 -3.03 9.08 71.98 0.65 -2.38 16 4 C 0.12 1.78 5.79 86.38 0.50 2.28 16 5 N -0.27 -6.41 2.86 -347.95 -0.99 -7.41 16 6 C 0.00 0.03 11.40 83.54 0.95 0.98 16 7 C -0.20 -5.72 10.81 22.41 0.24 -5.48 16 8 C -0.05 -1.76 7.13 42.46 0.30 -1.45 16 9 C 0.60 24.40 7.13 86.75 0.62 25.02 16 10 O -0.57 -24.98 15.08 -3.95 -0.06 -25.04 16 11 N -0.68 -27.71 4.35 -422.63 -1.84 -29.55 16 12 C 0.14 5.34 0.42 4.32 0.00 5.34 16 13 C -0.11 -3.43 6.01 30.72 0.18 -3.25 16 14 C -0.10 -2.78 6.91 32.44 0.22 -2.56 16 15 C -0.11 -3.75 6.45 30.93 0.20 -3.55 16 16 C 0.15 6.09 2.61 46.47 0.12 6.21 16 17 H 0.02 1.02 7.99 -2.39 -0.02 1.00 16 18 N -0.60 -30.75 3.10 -667.03 -2.07 -32.82 16 19 C -0.23 -12.78 10.28 84.03 0.86 -11.92 16 20 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 22 N -0.95 -58.48 10.55 21.65 0.23 -58.25 16 23 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 27 C 0.19 10.16 5.34 87.24 0.47 10.63 16 28 C -0.13 -5.54 6.26 31.71 0.20 -5.34 16 29 N -0.28 -9.31 11.27 -48.18 -0.54 -9.86 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.39 7.96 -2.39 -0.02 1.38 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.02 0.66 7.75 -2.39 -0.02 0.64 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.10 1.34 8.14 -2.38 -0.02 1.33 16 38 H 0.15 0.84 8.04 -2.39 -0.02 0.82 16 39 H 0.23 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.16 4.24 8.06 -2.91 -0.02 4.21 16 41 H 0.40 17.54 7.52 -92.71 -0.70 16.84 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.06 2.18 6.84 -2.39 -0.02 2.16 16 44 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.06 1.99 7.37 -2.39 -0.02 1.98 16 47 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 48 H 0.24 14.77 8.31 -92.71 -0.77 14.00 16 49 H 0.00 0.18 7.98 -2.39 -0.02 0.16 16 50 H 0.02 1.47 7.05 -2.39 -0.02 1.45 16 51 H 0.06 2.58 7.17 -2.39 -0.02 2.56 16 52 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -76.44 408.84 3.58 -72.85 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.21 Total: 33.96 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.63 Total: 7.92 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -5.22 Total: -137.90 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.06 Total: -25.04 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -76.44 3.58 -72.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990891055.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.222 kcal (2) G-P(sol) polarization free energy of solvation -76.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds