Wall clock time and date at job start Wed Apr 1 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 C 1.52999 * 109.47399 * 119.99953 * 2 1 3 5 5 N 1.46502 * 109.47114 * 175.00503 * 4 2 1 6 6 C 1.35031 * 124.88844 * 125.00132 * 5 4 2 7 7 C 1.35355 * 107.22979 * 180.02562 * 6 5 4 8 8 C 1.41502 * 105.50496 * 0.02562 * 7 6 5 9 9 C 1.47717 * 126.51824 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00165 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99834 * 179.97438 * 11 9 8 13 13 C 1.51370 * 111.41524 * 291.90607 * 12 11 9 14 14 C 1.55699 * 104.53434 * 275.90369 * 13 12 11 15 15 C 1.56276 * 105.99651 * 352.81222 * 14 13 12 16 16 C 1.50527 * 101.76209 * 335.70895 * 15 14 13 17 17 H 1.09005 * 108.14432 * 293.72783 * 16 15 14 18 18 N 1.42707 * 128.13897 * 161.29320 * 16 15 14 19 19 C 1.36936 * 127.10414 * 28.31684 * 18 16 15 20 20 H 1.07998 * 120.00066 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99891 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99720 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99794 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47279 * 89.99803 * 23 21 19 25 25 H 1.48506 * 109.46867 * 209.99875 * 23 21 19 26 26 H 1.48504 * 109.47235 * 329.99406 * 23 21 19 27 27 C 1.49302 * 105.79176 * 208.30216 * 18 16 15 28 28 C 1.52128 * 111.08213 * 71.70197 * 12 11 9 29 29 N 1.28472 * 124.88123 * 305.33621 * 5 4 2 30 30 H 1.09003 * 109.47208 * 299.99952 * 1 2 3 31 31 H 1.08995 * 109.47222 * 60.00429 * 1 2 3 32 32 H 1.08998 * 109.46655 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47208 * 240.00048 * 2 1 3 34 34 H 1.08995 * 109.46922 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46825 * 300.00159 * 3 2 1 36 36 H 1.08994 * 109.47421 * 60.00068 * 3 2 1 37 37 H 1.08994 * 109.47313 * 55.00299 * 4 2 1 38 38 H 1.09004 * 109.47138 * 295.00193 * 4 2 1 39 39 H 1.08008 * 126.38392 * 0.03421 * 6 5 4 40 40 H 1.07999 * 127.24734 * 179.97438 * 7 6 5 41 41 H 0.97005 * 120.00343 * 359.97438 * 11 9 8 42 42 H 1.08997 * 110.41824 * 157.16484 * 13 12 11 43 43 H 1.08998 * 110.47425 * 34.67499 * 13 12 11 44 44 H 1.09002 * 110.16021 * 233.65869 * 14 13 12 45 45 H 1.08995 * 110.15555 * 111.96513 * 14 13 12 46 46 H 1.09008 * 110.97127 * 93.82557 * 15 14 13 47 47 H 1.08996 * 110.97065 * 217.55025 * 15 14 13 48 48 H 0.97004 * 119.99386 * 180.02562 * 22 21 19 49 49 H 1.08995 * 110.04853 * 127.92265 * 27 18 16 50 50 H 1.09002 * 110.04356 * 249.40300 * 27 18 16 51 51 H 1.08996 * 111.15267 * 316.05869 * 28 12 11 52 52 H 1.09005 * 111.14702 * 191.83413 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8262 1.1905 6 6 4.3452 -0.3872 2.1479 7 6 5.6027 -0.6624 1.7296 8 6 5.4537 -1.2888 0.4696 9 6 6.5403 -1.7831 -0.4003 10 8 7.6990 -1.6670 -0.0512 11 7 6.2472 -2.3629 -1.5812 12 6 7.3250 -2.8526 -2.4442 13 6 8.1465 -1.7112 -3.0042 14 6 7.3546 -1.2385 -4.2586 15 6 6.1995 -2.2728 -4.4538 16 6 6.7590 -3.4906 -3.7683 17 1 7.6220 -3.8346 -4.3385 18 7 6.0537 -4.6365 -3.2930 19 6 4.8814 -5.1470 -3.7831 20 1 4.3928 -4.6700 -4.6198 21 6 4.3204 -6.2768 -3.2037 22 7 4.9157 -6.8577 -2.1836 23 14 2.7216 -6.9736 -3.8727 24 1 3.0208 -7.9697 -4.9326 25 1 1.9699 -7.6309 -2.7735 26 1 1.9030 -5.8739 -4.4436 27 6 6.8582 -5.1641 -2.1513 28 6 7.9673 -4.1026 -1.8618 29 7 4.1610 -1.3438 0.2180 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6056 -1.7198 1.2952 38 1 1.7517 -0.1583 2.1370 39 1 4.0690 0.0938 3.0747 40 1 6.5256 -0.4481 2.2480 41 1 5.3227 -2.4559 -1.8597 42 1 9.1383 -2.0612 -3.2906 43 1 8.2230 -0.9035 -2.2763 44 1 8.0050 -1.2323 -5.1333 45 1 6.9432 -0.2433 -4.0900 46 1 5.2861 -1.9347 -3.9642 47 1 6.0238 -2.4663 -5.5119 48 1 4.5239 -7.6475 -1.7790 49 1 6.2238 -5.2905 -1.2741 50 1 7.3141 -6.1160 -2.4238 51 1 8.1381 -3.9944 -0.7907 52 1 8.8927 -4.3485 -2.3828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990891057.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:41 Heat of formation + Delta-G solvation = 75.404563 kcal Electronic energy + Delta-G solvation = -32410.125571 eV Core-core repulsion = 28412.267240 eV Total energy + Delta-G solvation = -3997.858331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.53227 -40.26196 -37.83539 -36.63476 -34.35308 -32.96131 -32.15292 -31.55867 -30.56335 -29.72794 -27.49294 -27.00103 -26.86050 -25.64169 -24.02062 -23.18939 -21.34745 -20.71939 -20.40377 -19.86426 -19.43744 -18.45619 -17.74551 -16.45579 -16.33396 -16.24963 -15.63578 -15.14996 -14.69562 -14.52686 -14.26616 -14.05409 -13.89074 -13.78413 -13.61790 -13.33399 -13.12573 -12.97529 -12.59211 -12.49560 -12.26188 -12.23873 -11.80631 -11.50060 -11.33840 -11.33320 -11.26635 -11.10986 -10.96213 -10.88408 -10.73223 -10.59534 -10.43248 -10.24407 -9.96479 -9.89080 -9.63644 -9.58493 -9.11167 -9.10509 -8.89797 -8.61993 -8.30132 -6.81190 -5.70198 -3.04370 1.88728 2.31193 2.50560 3.39596 3.44624 3.46416 3.75394 3.93158 4.19449 4.46763 4.49027 4.66504 4.71005 4.74994 4.86205 5.00580 5.18454 5.26709 5.30588 5.32676 5.32791 5.48908 5.52869 5.52992 5.60259 5.67980 5.77456 5.80197 5.83828 5.89794 5.91749 5.95898 6.03053 6.03470 6.08305 6.22547 6.33280 6.40599 6.44944 6.51400 6.54989 6.59336 6.74857 6.86144 6.90744 6.98794 7.31573 7.57444 7.66265 7.83336 7.99442 8.24703 8.31858 8.83866 9.17565 9.84350 10.53838 11.42067 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008028 B = 0.004537 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3487.024230 B = 6170.362371 C = 7919.167783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.125 3.875 5 N -0.281 5.281 6 C -0.027 4.027 7 C -0.182 4.182 8 C -0.011 4.011 9 C 0.601 3.399 10 O -0.546 6.546 11 N -0.674 5.674 12 C 0.131 3.869 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.114 4.114 16 C 0.159 3.841 17 H 0.023 0.977 18 N -0.583 5.583 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.179 3.821 28 C -0.139 4.139 29 N -0.250 5.250 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.176 0.824 40 H 0.158 0.842 41 H 0.409 0.591 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.252 0.748 49 H 0.064 0.936 50 H 0.035 0.965 51 H 0.068 0.932 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 16.546 6.504 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.204 4.204 4 C 0.005 3.995 5 N -0.069 5.069 6 C -0.169 4.169 7 C -0.210 4.210 8 C -0.172 4.172 9 C 0.385 3.615 10 O -0.423 6.423 11 N -0.324 5.324 12 C 0.043 3.957 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.049 3.951 17 H 0.040 0.960 18 N -0.306 5.306 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.055 3.945 28 C -0.178 4.178 29 N -0.085 5.085 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.194 0.806 40 H 0.176 0.824 41 H 0.246 0.754 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.083 0.917 50 H 0.053 0.947 51 H 0.087 0.913 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.882 16.041 5.981 17.803 hybrid contribution -0.829 -0.315 0.339 0.949 sum -5.711 15.726 6.320 17.885 Atomic orbital electron populations 1.21777 0.93686 1.02488 1.02327 1.21451 0.96461 0.96884 0.98290 1.21831 1.01423 0.95233 1.01920 1.22136 0.73930 1.03058 1.00420 1.45517 1.07504 1.41195 1.12676 1.22773 0.89996 1.06685 0.97466 1.21721 0.97726 1.05169 0.96410 1.22131 0.90619 1.06818 0.97617 1.16861 0.86403 0.77711 0.80516 1.90725 1.19347 1.58556 1.73664 1.45566 1.10896 1.57921 1.18038 1.21590 0.88736 0.92429 0.92972 1.21896 0.98188 0.98133 0.96811 1.22813 0.96808 0.98334 0.97490 1.21835 0.97872 0.95275 1.00315 1.20836 0.94300 0.88218 0.91790 0.96027 1.43664 1.24507 1.26885 1.35591 1.18997 0.97078 1.07812 1.11733 0.90362 1.24777 0.98944 0.98208 0.98146 1.69928 1.39543 1.22289 1.24693 0.86183 0.83270 0.78940 0.77730 1.21668 1.21831 1.20727 1.22007 0.89313 0.92221 0.90962 1.22797 0.98841 0.95367 1.00833 1.73582 1.05428 1.15962 1.13575 0.92501 0.91770 0.92013 0.88920 0.92622 0.92141 0.92723 0.88821 0.88203 0.80636 0.82397 0.75395 0.91107 0.91166 0.91996 0.92345 0.91623 0.91834 0.93781 0.91726 0.94709 0.91334 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.11 -1.00 2.95 -90.62 -0.27 -1.26 16 3 C -0.15 -1.25 9.08 37.16 0.34 -0.91 16 4 C 0.12 1.11 5.79 -4.04 -0.02 1.08 16 5 N -0.28 -3.52 2.86 -61.33 -0.18 -3.69 16 6 C -0.03 -0.30 11.40 -17.17 -0.20 -0.50 16 7 C -0.18 -2.61 10.81 -39.37 -0.43 -3.04 16 8 C -0.01 -0.20 7.13 -82.76 -0.59 -0.79 16 9 C 0.60 11.78 7.15 -12.39 -0.09 11.69 16 10 O -0.55 -11.58 15.08 5.31 0.08 -11.50 16 11 N -0.67 -13.25 4.39 -47.48 -0.21 -13.46 16 12 C 0.13 2.54 0.40 -130.63 -0.05 2.48 16 13 C -0.11 -1.87 6.05 -26.12 -0.16 -2.03 16 14 C -0.12 -1.74 6.93 -23.53 -0.16 -1.90 16 15 C -0.11 -2.00 6.47 -26.21 -0.17 -2.17 16 16 C 0.16 3.30 2.64 -68.71 -0.18 3.11 16 17 H 0.02 0.48 7.94 -51.93 -0.41 0.06 16 18 N -0.58 -14.55 3.12 -162.67 -0.51 -15.05 16 19 C -0.23 -6.18 10.29 -15.06 -0.15 -6.33 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -26.89 10.55 55.49 0.59 -26.31 16 23 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 C 0.18 4.44 5.33 -0.75 0.00 4.44 16 28 C -0.14 -2.92 6.19 -25.44 -0.16 -3.07 16 29 N -0.25 -4.08 11.26 33.42 0.38 -3.70 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.08 7.95 -51.93 -0.41 0.67 16 34 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.10 0.56 8.04 -51.93 -0.42 0.15 16 39 H 0.18 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.41 8.46 7.53 -40.82 -0.31 8.15 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.23 6.86 -51.93 -0.36 0.87 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 1.18 7.38 -51.92 -0.38 0.80 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.06 1.81 7.05 -51.93 -0.37 1.44 16 50 H 0.03 0.93 7.98 -51.93 -0.41 0.52 16 51 H 0.07 1.48 7.17 -51.93 -0.37 1.11 16 52 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 408.89 15.07 6.16 6.16 Total: -1.00 -32.38 408.89 -9.65 -42.03 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.89 Total: 8.68 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.05 Total: -0.07 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.07 Total: -62.22 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.38 -9.65 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990891057.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.434 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds