Wall clock time and date at job start Wed Apr 1 2020 04:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47011 * 240.00324 * 2 1 3 5 5 N 1.46500 * 109.47518 * 120.00066 * 2 1 3 6 6 C 1.35035 * 124.88363 * 74.99947 * 5 2 1 7 7 C 1.35363 * 107.23044 * 180.02562 * 6 5 2 8 8 C 1.41501 * 105.49876 * 0.02562 * 7 6 5 9 9 C 1.47719 * 126.51470 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00014 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99939 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00121 * 180.02562 * 11 9 8 13 13 C 1.53588 * 112.67143 * 300.65938 * 12 11 9 14 14 C 1.54219 * 106.67637 * 238.55786 * 13 12 11 15 15 C 1.57306 * 104.37031 * 334.98861 * 14 13 12 16 16 C 1.54773 * 102.04050 * 37.72448 * 15 14 13 17 17 H 1.09002 * 111.86675 * 85.42086 * 16 15 14 18 18 N 1.46984 * 108.68849 * 209.36748 * 16 15 14 19 19 C 1.36936 * 125.57724 * 295.11036 * 18 16 15 20 20 H 1.07999 * 120.00299 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99752 * 180.02562 * 19 18 16 22 22 N 1.31626 * 120.00523 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99864 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47241 * 89.99876 * 23 21 19 25 25 H 1.48501 * 109.47140 * 209.99871 * 23 21 19 26 26 H 1.48503 * 109.47155 * 329.99656 * 23 21 19 27 27 C 1.47371 * 108.84093 * 115.08999 * 18 16 15 28 28 C 1.54868 * 104.81867 * 335.30682 * 27 18 16 29 29 N 1.28471 * 124.88772 * 255.34068 * 5 2 1 30 30 H 1.09001 * 109.46932 * 299.99760 * 1 2 3 31 31 H 1.08997 * 109.47002 * 59.99372 * 1 2 3 32 32 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47148 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47731 * 300.00182 * 3 2 1 35 35 H 1.09001 * 109.47058 * 60.00317 * 3 2 1 36 36 H 1.09001 * 109.46936 * 299.99571 * 4 2 1 37 37 H 1.09000 * 109.47448 * 60.00063 * 4 2 1 38 38 H 1.09005 * 109.47203 * 179.97438 * 4 2 1 39 39 H 1.08007 * 126.38554 * 359.97438 * 6 5 2 40 40 H 1.07995 * 127.24747 * 179.97438 * 7 6 5 41 41 H 0.96999 * 120.00280 * 359.97438 * 11 9 8 42 42 H 1.09009 * 110.01159 * 357.85871 * 13 12 11 43 43 H 1.08994 * 110.01767 * 119.20155 * 13 12 11 44 44 H 1.08997 * 110.49254 * 93.71946 * 14 13 12 45 45 H 1.08991 * 110.49362 * 216.24957 * 14 13 12 46 46 H 1.09002 * 110.79828 * 279.87935 * 15 14 13 47 47 H 1.08996 * 111.64872 * 155.95529 * 15 14 13 48 48 H 0.96996 * 120.00471 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.36799 * 94.14388 * 27 18 16 50 50 H 1.09000 * 110.36535 * 216.36612 * 27 18 16 51 51 H 1.08998 * 110.96864 * 155.19732 * 28 27 18 52 52 H 1.08997 * 110.96931 * 278.95327 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0056 -2.0291 1.3745 7 6 2.5353 -2.2760 2.5954 8 6 2.8618 -1.0070 3.1296 9 6 3.4702 -0.7387 4.4487 10 8 3.7390 -1.6615 5.1931 11 7 3.7264 0.5291 4.8273 12 6 4.3303 0.7952 6.1352 13 6 3.4773 0.2694 7.2991 14 6 3.1491 1.4839 8.1912 15 6 4.3131 2.5030 7.9069 16 6 4.5478 2.3101 6.3893 17 1 3.8726 2.9238 5.7929 18 7 5.9573 2.6001 6.0901 19 6 6.5661 3.8192 6.2255 20 1 6.0007 4.6688 6.5788 21 6 7.9096 3.9631 5.9077 22 7 8.5986 2.9277 5.4766 23 14 8.7402 5.6260 6.0931 24 1 9.3064 5.7468 7.4605 25 1 9.8311 5.7486 5.0930 26 1 7.7434 6.7045 5.8730 27 6 6.6082 1.3639 5.6210 28 6 5.7643 0.2165 6.2289 29 7 2.5149 -0.1096 2.2288 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 1.6400 -2.7653 0.6739 40 1 2.6779 -3.2387 3.0636 41 1 3.5116 1.2654 4.2335 42 1 2.5570 -0.1726 6.9172 43 1 4.0387 -0.4716 7.8681 44 1 2.1883 1.9152 7.9101 45 1 3.1439 1.1951 9.2421 46 1 5.2069 2.2370 8.4713 47 1 4.0117 3.5281 8.1225 48 1 9.5375 3.0282 5.2549 49 1 6.5880 1.3141 4.5323 50 1 7.6351 1.3149 5.9833 51 1 5.8574 -0.6929 5.6354 52 1 6.0442 0.0338 7.2663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990913612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:52 Heat of formation + Delta-G solvation = 69.566999 kcal Electronic energy + Delta-G solvation = -31913.496306 eV Core-core repulsion = 27915.384840 eV Total energy + Delta-G solvation = -3998.111466 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.75366 -39.91300 -37.91694 -36.96590 -34.13988 -33.25032 -31.42210 -30.95306 -30.73026 -29.50633 -27.93385 -27.66274 -26.66404 -26.01767 -23.95379 -23.73424 -21.97716 -20.84275 -19.94012 -19.89016 -19.22904 -18.56264 -17.59469 -16.92259 -16.41034 -16.12432 -15.58544 -14.87172 -14.65445 -14.55388 -14.34184 -14.07322 -13.82875 -13.75965 -13.44388 -13.32721 -12.93174 -12.80686 -12.75993 -12.62816 -12.42836 -12.20656 -12.07968 -11.74065 -11.62898 -11.55778 -11.52512 -11.09622 -10.92178 -10.79288 -10.76325 -10.58165 -10.46505 -10.10443 -10.01876 -9.86572 -9.71226 -9.55037 -9.36754 -9.22321 -9.04328 -8.59502 -8.39238 -6.78441 -5.58602 -3.01640 1.73661 2.19019 2.28546 3.42485 3.47240 3.49371 3.55865 3.75118 4.00573 4.27958 4.38455 4.51984 4.64973 4.68889 4.95268 4.98329 5.07975 5.16028 5.25020 5.25898 5.27965 5.39096 5.41340 5.44292 5.50023 5.58002 5.69401 5.71320 5.74449 5.79654 5.92674 5.93538 5.94814 6.05664 6.18065 6.22054 6.38041 6.43523 6.45445 6.50446 6.63149 6.69171 6.76638 6.87605 6.88996 7.08056 7.23548 7.63257 7.70842 7.83302 7.94486 8.11250 8.43336 8.64591 9.27457 9.88565 10.53488 11.43790 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003209 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.336988 B = 8723.161753 C =10010.795840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.274 5.274 6 C -0.024 4.024 7 C -0.180 4.180 8 C -0.014 4.014 9 C 0.603 3.397 10 O -0.534 6.534 11 N -0.691 5.691 12 C 0.162 3.838 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.127 4.127 16 C 0.160 3.840 17 H 0.044 0.956 18 N -0.596 5.596 19 C -0.218 4.218 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.153 3.847 28 C -0.142 4.142 29 N -0.255 5.255 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.176 0.824 40 H 0.159 0.841 41 H 0.404 0.596 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.251 0.749 49 H 0.008 0.992 50 H 0.108 0.892 51 H 0.066 0.934 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.588 -8.269 -11.501 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.064 5.064 6 C -0.166 4.166 7 C -0.208 4.208 8 C -0.175 4.175 9 C 0.387 3.613 10 O -0.409 6.409 11 N -0.341 5.341 12 C 0.076 3.924 13 C -0.148 4.148 14 C -0.164 4.164 15 C -0.167 4.167 16 C 0.052 3.948 17 H 0.062 0.938 18 N -0.320 5.320 19 C -0.346 4.346 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.028 3.972 28 C -0.181 4.181 29 N -0.090 5.090 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.193 0.807 40 H 0.177 0.823 41 H 0.239 0.761 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.026 0.974 50 H 0.125 0.875 51 H 0.084 0.916 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.205 -7.597 -11.325 21.954 hybrid contribution 0.303 0.256 -0.302 0.499 sum -16.902 -7.341 -11.628 21.789 Atomic orbital electron populations 1.22246 0.92356 1.03282 1.03783 1.21026 0.94913 0.94188 0.81283 1.21979 1.02789 0.92324 1.03544 1.22235 1.02741 1.00964 0.95783 1.45785 1.42949 1.04699 1.12930 1.22669 1.07647 0.86407 0.99876 1.21743 1.05288 0.98775 0.94985 1.22095 1.07513 0.91490 0.96363 1.16843 0.77782 0.83243 0.83453 1.90763 1.53142 1.44066 1.52946 1.45765 1.61896 1.07371 1.19023 1.21653 0.93276 0.96168 0.81319 1.22209 0.99408 0.97447 0.95718 1.22783 0.98618 0.96147 0.98810 1.23359 0.97540 0.97676 0.98139 1.21801 0.88481 0.90586 0.93909 0.93810 1.44538 1.03418 1.07110 1.76934 1.19034 0.92522 0.86015 1.37077 0.90551 1.24771 0.96641 0.97580 1.01637 1.69811 1.08198 1.27853 1.51007 0.86111 0.79139 0.83140 0.77325 1.21662 1.21796 1.20831 1.21967 0.98541 0.81636 0.95043 1.23328 0.93745 0.99641 1.01405 1.73507 1.13672 1.26450 0.95388 0.91328 0.90040 0.91622 0.91113 0.90651 0.90530 0.91400 0.89798 0.91158 0.80726 0.82296 0.76075 0.92202 0.91078 0.92405 0.92290 0.90683 0.92186 0.93831 0.97351 0.87457 0.91560 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.70 37.16 0.32 -0.63 16 2 C 0.17 1.31 1.21 -131.82 -0.16 1.15 16 3 C -0.15 -1.25 8.01 37.16 0.30 -0.95 16 4 C -0.16 -0.90 8.27 37.16 0.31 -0.59 16 5 N -0.27 -3.06 3.16 -48.62 -0.15 -3.22 16 6 C -0.02 -0.24 10.52 -17.17 -0.18 -0.42 16 7 C -0.18 -2.38 10.81 -39.36 -0.43 -2.80 16 8 C -0.01 -0.23 7.13 -82.77 -0.59 -0.82 16 9 C 0.60 11.00 6.97 -12.39 -0.09 10.91 16 10 O -0.53 -10.84 14.80 5.30 0.08 -10.76 16 11 N -0.69 -12.57 5.22 -46.32 -0.24 -12.81 16 12 C 0.16 3.12 0.73 -129.37 -0.09 3.03 16 13 C -0.11 -1.89 5.26 -25.79 -0.14 -2.02 16 14 C -0.13 -1.97 6.90 -23.75 -0.16 -2.14 16 15 C -0.13 -2.38 6.40 -23.45 -0.15 -2.53 16 16 C 0.16 3.35 3.58 -65.60 -0.23 3.11 16 17 H 0.04 0.92 7.99 -51.93 -0.42 0.50 16 18 N -0.60 -15.10 3.04 -161.13 -0.49 -15.59 16 19 C -0.22 -5.99 9.99 -15.06 -0.15 -6.14 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.08 10.07 55.49 0.56 -26.52 16 23 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.15 3.87 5.91 -2.58 -0.02 3.86 16 28 C -0.14 -3.06 5.77 -24.74 -0.14 -3.20 16 29 N -0.25 -3.68 10.62 33.42 0.35 -3.32 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.75 7.99 -51.93 -0.41 0.33 16 36 H 0.07 0.31 7.27 -51.93 -0.38 -0.07 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.18 1.12 7.47 -52.48 -0.39 0.73 16 40 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.40 7.10 8.23 -40.82 -0.34 6.77 16 42 H 0.06 1.03 7.43 -51.92 -0.39 0.65 16 43 H 0.07 1.25 7.43 -51.93 -0.39 0.87 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 49 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.11 3.05 5.82 -51.93 -0.30 2.75 16 51 H 0.07 1.46 6.78 -51.93 -0.35 1.10 16 52 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 LS Contribution 405.37 15.07 6.11 6.11 Total: -1.00 -32.69 405.37 -9.31 -41.99 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.80 Total: 7.57 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.70 Total: -0.60 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.03 Total: -61.45 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.69 -9.31 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990913612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.560 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds