Wall clock time and date at job start Wed Apr 1 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 C 1.52998 * 109.47011 * 240.00324 * 2 1 3 5 5 N 1.46500 * 109.47518 * 120.00066 * 2 1 3 6 6 C 1.35035 * 124.88363 * 74.99947 * 5 2 1 7 7 C 1.35363 * 107.23044 * 180.02562 * 6 5 2 8 8 C 1.41501 * 105.49876 * 0.02562 * 7 6 5 9 9 C 1.47719 * 126.51470 * 179.97438 * 8 7 6 10 10 O 1.21570 * 120.00014 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99939 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00121 * 180.02562 * 11 9 8 13 13 C 1.53588 * 112.67143 * 300.65938 * 12 11 9 14 14 C 1.54219 * 106.67637 * 238.55786 * 13 12 11 15 15 C 1.57306 * 104.37031 * 334.98861 * 14 13 12 16 16 C 1.54773 * 102.04050 * 37.72448 * 15 14 13 17 17 H 1.09002 * 111.86675 * 85.42086 * 16 15 14 18 18 N 1.46984 * 108.68849 * 209.36748 * 16 15 14 19 19 C 1.36936 * 125.57724 * 295.11036 * 18 16 15 20 20 H 1.07999 * 120.00299 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99752 * 180.02562 * 19 18 16 22 22 N 1.31626 * 120.00523 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99864 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47241 * 89.99876 * 23 21 19 25 25 H 1.48501 * 109.47140 * 209.99871 * 23 21 19 26 26 H 1.48503 * 109.47155 * 329.99656 * 23 21 19 27 27 C 1.47371 * 108.84093 * 115.08999 * 18 16 15 28 28 C 1.54868 * 104.81867 * 335.30682 * 27 18 16 29 29 N 1.28471 * 124.88772 * 255.34068 * 5 2 1 30 30 H 1.09001 * 109.46932 * 299.99760 * 1 2 3 31 31 H 1.08997 * 109.47002 * 59.99372 * 1 2 3 32 32 H 1.09001 * 109.46920 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47148 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47731 * 300.00182 * 3 2 1 35 35 H 1.09001 * 109.47058 * 60.00317 * 3 2 1 36 36 H 1.09001 * 109.46936 * 299.99571 * 4 2 1 37 37 H 1.09000 * 109.47448 * 60.00063 * 4 2 1 38 38 H 1.09005 * 109.47203 * 179.97438 * 4 2 1 39 39 H 1.08007 * 126.38554 * 359.97438 * 6 5 2 40 40 H 1.07995 * 127.24747 * 179.97438 * 7 6 5 41 41 H 0.96999 * 120.00280 * 359.97438 * 11 9 8 42 42 H 1.09009 * 110.01159 * 357.85871 * 13 12 11 43 43 H 1.08994 * 110.01767 * 119.20155 * 13 12 11 44 44 H 1.08997 * 110.49254 * 93.71946 * 14 13 12 45 45 H 1.08991 * 110.49362 * 216.24957 * 14 13 12 46 46 H 1.09002 * 110.79828 * 279.87935 * 15 14 13 47 47 H 1.08996 * 111.64872 * 155.95529 * 15 14 13 48 48 H 0.96996 * 120.00471 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.36799 * 94.14388 * 27 18 16 50 50 H 1.09000 * 110.36535 * 216.36612 * 27 18 16 51 51 H 1.08998 * 110.96864 * 155.19732 * 28 27 18 52 52 H 1.08997 * 110.96931 * 278.95327 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0056 -2.0291 1.3745 7 6 2.5353 -2.2760 2.5954 8 6 2.8618 -1.0070 3.1296 9 6 3.4702 -0.7387 4.4487 10 8 3.7390 -1.6615 5.1931 11 7 3.7264 0.5291 4.8273 12 6 4.3303 0.7952 6.1352 13 6 3.4773 0.2694 7.2991 14 6 3.1491 1.4839 8.1912 15 6 4.3131 2.5030 7.9069 16 6 4.5478 2.3101 6.3893 17 1 3.8726 2.9238 5.7929 18 7 5.9573 2.6001 6.0901 19 6 6.5661 3.8192 6.2255 20 1 6.0007 4.6688 6.5788 21 6 7.9096 3.9631 5.9077 22 7 8.5986 2.9277 5.4766 23 14 8.7402 5.6260 6.0931 24 1 9.3064 5.7468 7.4605 25 1 9.8311 5.7486 5.0930 26 1 7.7434 6.7045 5.8730 27 6 6.6082 1.3639 5.6210 28 6 5.7643 0.2165 6.2289 29 7 2.5149 -0.1096 2.2288 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 1.6400 -2.7653 0.6739 40 1 2.6779 -3.2387 3.0636 41 1 3.5116 1.2654 4.2335 42 1 2.5570 -0.1726 6.9172 43 1 4.0387 -0.4716 7.8681 44 1 2.1883 1.9152 7.9101 45 1 3.1439 1.1951 9.2421 46 1 5.2069 2.2370 8.4713 47 1 4.0117 3.5281 8.1225 48 1 9.5375 3.0282 5.2549 49 1 6.5880 1.3141 4.5323 50 1 7.6351 1.3149 5.9833 51 1 5.8574 -0.6929 5.6354 52 1 6.0442 0.0338 7.2663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990913612.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:51 Heat of formation + Delta-G solvation = 49.456643 kcal Electronic energy + Delta-G solvation = -31914.368357 eV Core-core repulsion = 27915.384840 eV Total energy + Delta-G solvation = -3998.983517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.70870 -41.48476 -39.40634 -37.72096 -36.01017 -34.72040 -33.32575 -32.01723 -31.87772 -31.10176 -28.44772 -28.37330 -28.31717 -27.56806 -25.75804 -25.08025 -22.99711 -22.36236 -21.59737 -20.98990 -20.48937 -20.03762 -18.88784 -18.70239 -17.45702 -17.11747 -17.04323 -16.84031 -16.02890 -15.75963 -15.54171 -15.27811 -15.08042 -14.82554 -14.65881 -14.62872 -14.46327 -14.08959 -13.82822 -13.51339 -13.28092 -13.22578 -13.16735 -13.10303 -12.94705 -12.79231 -12.74866 -12.65150 -12.30604 -12.22319 -12.16306 -12.02906 -11.93372 -11.72435 -11.69703 -11.60777 -11.49479 -11.28004 -10.97811 -10.72270 -10.23697 -10.06716 -9.87564 -8.86900 -7.73245 -5.18775 0.59209 1.23570 1.47100 1.48597 1.49296 1.57533 2.17824 2.42883 2.51488 3.25434 3.34410 3.38625 3.64074 3.72222 3.72726 3.83631 3.93112 3.93900 3.96357 4.22064 4.34683 4.40468 4.47050 4.57507 4.59113 4.60622 4.64875 4.68262 4.70267 4.75062 4.78532 4.79767 4.81987 4.84403 4.88647 4.95234 5.08745 5.10038 5.17184 5.22400 5.23103 5.23575 5.31641 5.41600 5.47022 5.50944 5.63867 5.67439 5.82292 5.97271 6.30342 6.49936 6.96595 7.11559 7.22891 7.79780 8.44806 9.28306 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011309 B = 0.003209 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.336988 B = 8723.161753 C =10010.795840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 C -0.149 4.149 4 C -0.156 4.156 5 N -0.267 5.267 6 C -0.001 4.001 7 C -0.200 4.200 8 C -0.050 4.050 9 C 0.601 3.399 10 O -0.561 6.561 11 N -0.692 5.692 12 C 0.169 3.831 13 C -0.103 4.103 14 C -0.109 4.109 15 C -0.122 4.122 16 C 0.153 3.847 17 H 0.049 0.951 18 N -0.611 5.611 19 C -0.225 4.225 20 H 0.086 0.914 21 C -0.070 4.070 22 N -0.952 5.952 23 Si 0.979 3.021 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.268 1.268 27 C 0.165 3.835 28 C -0.129 4.129 29 N -0.273 5.273 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.222 0.778 40 H 0.164 0.836 41 H 0.405 0.595 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.244 0.756 49 H -0.025 1.025 50 H 0.075 0.925 51 H 0.058 0.942 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.593 -8.263 -12.681 25.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.077 3.923 3 C -0.207 4.207 4 C -0.213 4.213 5 N -0.057 5.057 6 C -0.144 4.144 7 C -0.228 4.228 8 C -0.208 4.208 9 C 0.388 3.612 10 O -0.438 6.438 11 N -0.341 5.341 12 C 0.083 3.917 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.161 4.161 16 C 0.046 3.954 17 H 0.066 0.934 18 N -0.335 5.335 19 C -0.354 4.354 20 H 0.104 0.896 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.213 1.213 25 H -0.225 1.225 26 H -0.193 1.193 27 C 0.039 3.961 28 C -0.169 4.169 29 N -0.111 5.111 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.123 0.877 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.071 0.929 39 H 0.239 0.761 40 H 0.181 0.819 41 H 0.241 0.759 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.054 0.946 49 H -0.007 1.007 50 H 0.092 0.908 51 H 0.076 0.924 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.257 -7.574 -12.497 24.978 hybrid contribution 1.191 0.257 -0.078 1.221 sum -19.067 -7.317 -12.575 23.983 Atomic orbital electron populations 1.22245 0.90360 1.04289 1.04209 1.21486 0.96351 0.93649 0.80805 1.21995 1.01223 0.93380 1.04063 1.22269 1.01658 1.02155 0.95263 1.46291 1.41193 1.05439 1.12743 1.23270 1.05274 0.86603 0.99268 1.21959 1.06416 0.98095 0.96326 1.21890 1.09759 0.93141 0.96026 1.17194 0.77165 0.82614 0.84270 1.90725 1.54410 1.44586 1.54098 1.45747 1.61884 1.07759 1.18743 1.21557 0.92348 0.94943 0.82878 1.22156 0.98942 0.98159 0.94908 1.22719 0.98032 0.94072 0.99847 1.23217 0.98088 0.99254 0.95583 1.22047 0.86095 0.91601 0.95664 0.93381 1.44730 1.05385 1.06506 1.76885 1.19426 0.92872 0.87018 1.36099 0.89647 1.25619 0.97445 1.01025 1.02099 1.70072 1.07949 1.29820 1.52412 0.85059 0.77902 0.79391 0.76869 1.21309 1.22523 1.19307 1.21606 0.97752 0.83638 0.93074 1.23135 0.95058 0.97794 1.00865 1.73451 1.14427 1.26926 0.96251 0.93166 0.87365 0.90315 0.93524 0.87683 0.92477 0.89509 0.87238 0.92902 0.76135 0.81875 0.75920 0.91776 0.91385 0.90273 0.89883 0.92792 0.91190 0.94607 1.00659 0.90751 0.92357 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.70 71.98 0.63 -0.72 16 2 C 0.16 2.09 1.21 3.60 0.00 2.10 16 3 C -0.15 -2.38 8.01 71.98 0.58 -1.80 16 4 C -0.16 -1.24 8.27 71.98 0.60 -0.64 16 5 N -0.27 -5.59 3.16 -307.73 -0.97 -6.56 16 6 C 0.00 -0.02 10.52 83.54 0.88 0.85 16 7 C -0.20 -5.17 10.81 22.41 0.24 -4.93 16 8 C -0.05 -1.62 7.13 42.46 0.30 -1.31 16 9 C 0.60 22.68 6.97 86.75 0.60 23.29 16 10 O -0.56 -23.43 14.80 -3.94 -0.06 -23.49 16 11 N -0.69 -25.98 5.22 -418.74 -2.19 -28.17 16 12 C 0.17 6.63 0.73 5.19 0.00 6.64 16 13 C -0.10 -3.46 5.26 31.20 0.16 -3.29 16 14 C -0.11 -3.14 6.90 32.52 0.22 -2.92 16 15 C -0.12 -4.42 6.40 32.72 0.21 -4.21 16 16 C 0.15 6.41 3.58 46.24 0.17 6.58 16 17 H 0.05 2.00 7.99 -2.39 -0.02 1.98 16 18 N -0.61 -31.93 3.04 -663.69 -2.02 -33.94 16 19 C -0.23 -12.61 9.99 84.03 0.84 -11.77 16 20 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 21 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 22 N -0.95 -58.55 10.07 21.65 0.22 -58.34 16 23 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.16 8.85 5.91 86.85 0.51 9.36 16 28 C -0.13 -5.82 5.77 31.89 0.18 -5.63 16 29 N -0.27 -7.98 10.62 -48.18 -0.51 -8.49 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.12 7.99 -2.39 -0.02 1.11 16 36 H 0.09 0.39 7.27 -2.39 -0.02 0.37 16 37 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.22 1.80 7.47 -2.91 -0.02 1.78 16 40 H 0.16 3.93 8.06 -2.91 -0.02 3.90 16 41 H 0.41 14.86 8.23 -92.71 -0.76 14.09 16 42 H 0.06 2.13 7.43 -2.38 -0.02 2.11 16 43 H 0.07 2.34 7.43 -2.39 -0.02 2.32 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.05 2.20 8.10 -2.39 -0.02 2.18 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 49 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 50 H 0.07 4.52 5.82 -2.39 -0.01 4.50 16 51 H 0.06 2.70 6.78 -2.39 -0.02 2.69 16 52 H 0.07 3.12 7.68 -2.39 -0.02 3.10 16 Total: -1.00 -75.47 405.37 3.25 -72.22 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.15 Total: 30.34 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.60 Total: 8.02 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -5.47 Total: -135.50 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.06 Total: -23.49 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.47 3.25 -72.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990913612.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.678 kcal (2) G-P(sol) polarization free energy of solvation -75.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds