Wall clock time and date at job start Wed Apr 1 2020 04:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47236 * 2 1 4 4 C 1.52999 * 109.47119 * 239.99562 * 2 1 3 5 5 N 1.46500 * 109.47111 * 119.99586 * 2 1 3 6 6 C 1.35040 * 124.88356 * 74.99508 * 5 2 1 7 7 C 1.35365 * 107.22750 * 180.02562 * 6 5 2 8 8 C 1.41504 * 105.50395 * 0.02562 * 7 6 5 9 9 C 1.47709 * 126.51587 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00150 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99690 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99606 * 179.97438 * 11 9 8 13 13 C 1.51224 * 111.05860 * 68.35037 * 12 11 9 14 14 C 1.55049 * 104.91793 * 84.41000 * 13 12 11 15 15 C 1.56277 * 105.91937 * 6.67117 * 14 13 12 16 16 C 1.50528 * 101.75797 * 24.63822 * 15 14 13 17 17 H 1.09009 * 108.14973 * 66.93301 * 16 15 14 18 18 N 1.42708 * 127.75668 * 198.93768 * 16 15 14 19 19 C 1.36935 * 127.10363 * 331.43425 * 18 16 15 20 20 H 1.07997 * 119.99929 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99935 * 179.97438 * 19 18 16 22 22 N 1.31613 * 120.00031 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99971 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47341 * 90.00312 * 23 21 19 25 25 H 1.48502 * 109.47564 * 210.00510 * 23 21 19 26 26 H 1.48504 * 109.47359 * 330.00389 * 23 21 19 27 27 C 1.49299 * 105.79459 * 151.45392 * 18 16 15 28 28 C 1.52120 * 111.08765 * 288.30347 * 12 11 9 29 29 N 1.28463 * 124.88821 * 255.00151 * 5 2 1 30 30 H 1.09000 * 109.47281 * 300.00536 * 1 2 3 31 31 H 1.09006 * 109.47026 * 60.00159 * 1 2 3 32 32 H 1.08991 * 109.47356 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46962 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46499 * 299.99724 * 3 2 1 35 35 H 1.09000 * 109.47423 * 59.99551 * 3 2 1 36 36 H 1.09001 * 109.47171 * 299.99906 * 4 2 1 37 37 H 1.08997 * 109.46834 * 60.00341 * 4 2 1 38 38 H 1.09003 * 109.46758 * 180.02562 * 4 2 1 39 39 H 1.07997 * 126.38271 * 0.27397 * 6 5 2 40 40 H 1.07997 * 127.24583 * 179.97438 * 7 6 5 41 41 H 0.96996 * 120.00089 * 0.02562 * 11 9 8 42 42 H 1.09004 * 110.40520 * 202.63631 * 13 12 11 43 43 H 1.08999 * 110.41158 * 325.06790 * 13 12 11 44 44 H 1.08996 * 109.84810 * 247.72559 * 14 13 12 45 45 H 1.09007 * 110.54705 * 125.98511 * 14 13 12 46 46 H 1.09000 * 110.96860 * 266.52705 * 15 14 13 47 47 H 1.09002 * 110.97461 * 142.75732 * 15 14 13 48 48 H 0.97007 * 120.00312 * 179.97438 * 22 21 19 49 49 H 1.09000 * 110.04528 * 110.59412 * 27 18 16 50 50 H 1.08990 * 110.04949 * 232.07721 * 27 18 16 51 51 H 1.09007 * 111.15195 * 43.94371 * 28 12 11 52 52 H 1.08999 * 111.15216 * 168.16213 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 2.0054 -2.0290 1.3747 7 6 2.5350 -2.2758 2.5957 8 6 2.8616 -1.0068 3.1299 9 6 3.4700 -0.7384 4.4488 10 8 3.7387 -1.6612 5.1934 11 7 3.7273 0.5294 4.8268 12 6 4.3302 0.7956 6.1352 13 6 5.7580 0.3000 6.1865 14 6 6.6010 1.4474 5.5727 15 6 5.6107 2.6360 5.3517 16 6 4.5423 2.3384 6.3694 17 1 4.9774 2.4541 7.3622 18 7 3.2072 2.8409 6.4071 19 6 2.7610 4.0385 5.9155 20 1 3.4518 4.7165 5.4363 21 6 1.4208 4.3807 6.0320 22 7 0.5790 3.5543 6.6156 23 14 0.8121 6.0141 5.3607 24 1 0.3887 5.8418 3.9479 25 1 -0.3418 6.4827 6.1696 26 1 1.9054 7.0166 5.4311 27 6 2.3972 1.7913 7.0937 28 6 3.3352 0.5432 7.2579 29 7 2.5204 -0.1099 2.2263 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1391 38 1 3.1301 -0.7217 -1.2489 39 1 1.6439 -2.7655 0.6724 40 1 2.6775 -3.2385 3.0640 41 1 3.5125 1.2656 4.2329 42 1 6.0639 0.1286 7.2186 43 1 5.8648 -0.6131 5.6009 44 1 7.0229 1.1278 4.6199 45 1 7.3976 1.7442 6.2551 46 1 5.2021 2.6204 4.3413 47 1 6.0938 3.5904 5.5609 48 1 -0.3576 3.7935 6.6974 49 1 2.0794 2.1464 8.0740 50 1 1.5278 1.5349 6.4886 51 1 2.7838 -0.3827 7.0941 52 1 3.8308 0.5369 8.2287 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990913614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:58 Heat of formation + Delta-G solvation = 81.361910 kcal Electronic energy + Delta-G solvation = -32671.653319 eV Core-core repulsion = 28674.053318 eV Total energy + Delta-G solvation = -3997.600001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.58963 -40.26934 -37.89829 -36.81531 -34.35903 -32.92369 -31.68731 -30.79742 -30.57736 -29.55622 -27.78695 -27.50686 -26.87458 -25.78393 -24.14428 -23.78334 -21.84073 -20.50091 -20.24739 -19.62344 -19.41491 -18.42480 -17.57714 -16.43227 -16.27627 -15.96495 -15.63830 -14.70781 -14.54662 -14.49083 -14.30331 -14.01161 -13.89700 -13.81626 -13.68446 -13.26193 -12.94013 -12.71052 -12.56290 -12.48662 -12.27679 -12.25616 -12.05168 -11.80197 -11.46053 -11.39001 -11.33358 -11.27599 -10.96669 -10.87389 -10.72424 -10.57280 -10.42851 -10.24630 -9.95476 -9.89244 -9.63041 -9.57210 -9.09401 -9.06342 -8.89183 -8.62410 -8.29089 -6.81233 -5.70301 -3.04409 1.92245 2.33881 2.44909 3.38919 3.44520 3.46373 3.76997 3.95081 4.15677 4.42501 4.48979 4.53295 4.71386 4.78566 4.87743 5.09866 5.19665 5.29077 5.31535 5.33076 5.41447 5.43757 5.52890 5.54431 5.58080 5.63936 5.68294 5.80177 5.86559 5.87995 5.90423 5.94510 6.04495 6.08837 6.11210 6.23006 6.32524 6.41412 6.45781 6.52227 6.57229 6.61764 6.75107 6.90919 6.93285 6.99475 7.32708 7.57381 7.66224 7.83322 8.03821 8.24596 8.34394 8.85536 9.17514 9.84272 10.53903 11.41999 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.004705 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.248175 B = 5950.187523 C = 7900.017564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.168 3.832 3 C -0.149 4.149 4 C -0.157 4.157 5 N -0.274 5.274 6 C -0.026 4.026 7 C -0.182 4.182 8 C -0.014 4.014 9 C 0.602 3.398 10 O -0.547 6.547 11 N -0.675 5.675 12 C 0.132 3.868 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.115 4.115 16 C 0.158 3.842 17 H 0.023 0.977 18 N -0.584 5.584 19 C -0.228 4.228 20 H 0.079 0.921 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.179 3.821 28 C -0.140 4.140 29 N -0.248 5.248 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.174 0.826 40 H 0.158 0.842 41 H 0.409 0.591 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.252 0.748 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.068 0.932 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.248 -9.432 -14.568 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.215 4.215 5 N -0.064 5.064 6 C -0.169 4.169 7 C -0.210 4.210 8 C -0.174 4.174 9 C 0.386 3.614 10 O -0.424 6.424 11 N -0.325 5.325 12 C 0.044 3.956 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.154 4.154 16 C 0.048 3.952 17 H 0.041 0.959 18 N -0.307 5.307 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.056 3.944 28 C -0.179 4.179 29 N -0.083 5.083 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.191 0.809 40 H 0.175 0.825 41 H 0.246 0.754 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.052 0.948 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.161 -8.683 -14.328 17.263 hybrid contribution -0.697 0.277 -0.511 0.908 sum 3.463 -8.405 -14.839 17.402 Atomic orbital electron populations 1.22256 0.92330 1.03243 1.04011 1.21005 0.95035 0.94139 0.81162 1.21979 1.02372 0.92435 1.03869 1.22220 1.02445 1.00958 0.95902 1.45791 1.42887 1.04631 1.13079 1.22641 1.07787 0.86446 0.99981 1.21715 1.05663 0.98722 0.94900 1.22118 1.07617 0.91337 0.96375 1.16859 0.77772 0.83352 0.83444 1.90724 1.54100 1.44347 1.53182 1.45576 1.61138 1.07168 1.18607 1.21539 0.91185 0.99937 0.82946 1.21758 0.93869 0.98133 1.01287 1.22702 0.97642 0.94947 1.00143 1.21855 0.96235 0.97447 0.99857 1.20849 0.88202 0.89677 0.96455 0.95940 1.43666 1.02020 1.17544 1.67491 1.18997 0.92613 0.92612 1.31357 0.90362 1.24771 0.96112 0.98312 1.00872 1.69920 1.03105 1.35630 1.47812 0.86186 0.78314 0.83398 0.78255 1.21737 1.21779 1.20723 1.22147 0.92146 0.83554 0.96577 1.22919 0.98188 1.00428 0.96331 1.73583 1.13172 1.26222 0.95362 0.91017 0.90114 0.91686 0.91408 0.90761 0.90110 0.91472 0.89884 0.91368 0.80877 0.82463 0.75409 0.91233 0.91113 0.92402 0.91944 0.91613 0.91854 0.93780 0.94768 0.91656 0.91363 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 8.70 37.16 0.32 -1.08 16 2 C 0.17 1.64 1.21 -131.82 -0.16 1.48 16 3 C -0.15 -1.56 8.01 37.16 0.30 -1.26 16 4 C -0.16 -1.05 8.27 37.16 0.31 -0.75 16 5 N -0.27 -3.59 3.16 -48.62 -0.15 -3.75 16 6 C -0.03 -0.31 10.52 -17.16 -0.18 -0.49 16 7 C -0.18 -2.68 10.81 -39.36 -0.43 -3.11 16 8 C -0.01 -0.25 7.13 -82.77 -0.59 -0.84 16 9 C 0.60 11.90 7.13 -12.39 -0.09 11.82 16 10 O -0.55 -11.69 15.08 5.30 0.08 -11.61 16 11 N -0.67 -13.35 4.35 -47.55 -0.21 -13.56 16 12 C 0.13 2.57 0.42 -130.71 -0.05 2.51 16 13 C -0.11 -1.88 6.01 -26.54 -0.16 -2.04 16 14 C -0.12 -1.75 6.91 -23.89 -0.17 -1.91 16 15 C -0.12 -2.03 6.45 -26.21 -0.17 -2.20 16 16 C 0.16 3.29 2.61 -68.71 -0.18 3.11 16 17 H 0.02 0.50 7.99 -51.92 -0.41 0.08 16 18 N -0.58 -14.55 3.10 -162.19 -0.50 -15.06 16 19 C -0.23 -6.16 10.28 -15.06 -0.15 -6.31 16 20 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 22 N -0.92 -26.84 10.55 55.49 0.59 -26.25 16 23 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 27 C 0.18 4.46 5.34 -0.33 0.00 4.46 16 28 C -0.14 -2.93 6.26 -25.02 -0.16 -3.08 16 29 N -0.25 -4.15 10.61 33.42 0.35 -3.79 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.07 7.99 -51.93 -0.42 0.65 16 36 H 0.07 0.38 7.27 -51.93 -0.38 0.00 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.17 1.36 7.46 -52.49 -0.39 0.97 16 40 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 41 H 0.41 8.50 7.52 -40.82 -0.31 8.20 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.25 6.84 -51.93 -0.36 0.89 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 46 H 0.07 1.19 7.38 -51.93 -0.38 0.81 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 49 H 0.03 0.92 7.98 -51.93 -0.41 0.50 16 50 H 0.07 1.82 7.05 -51.93 -0.37 1.46 16 51 H 0.07 1.48 7.17 -51.92 -0.37 1.11 16 52 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 405.84 15.07 6.12 6.12 Total: -1.00 -32.28 405.84 -9.24 -41.53 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.84 Total: 9.40 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.65 Total: 0.11 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.08 Total: -62.41 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.28 -9.24 -41.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990913614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.889 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds