Wall clock time and date at job start Wed Apr 1 2020 04:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47176 * 239.99959 * 2 1 3 5 5 N 1.46502 * 109.46593 * 120.00222 * 2 1 3 6 6 C 1.35031 * 124.88844 * 75.00270 * 5 2 1 7 7 C 1.35355 * 107.22979 * 180.02562 * 6 5 2 8 8 C 1.41502 * 105.50496 * 0.02562 * 7 6 5 9 9 C 1.47717 * 126.51824 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00165 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99834 * 179.97438 * 11 9 8 13 13 C 1.51370 * 111.41524 * 291.90607 * 12 11 9 14 14 C 1.55699 * 104.53434 * 275.90369 * 13 12 11 15 15 C 1.56276 * 105.99651 * 352.81222 * 14 13 12 16 16 C 1.50527 * 101.76209 * 335.70895 * 15 14 13 17 17 H 1.09005 * 108.14432 * 293.72783 * 16 15 14 18 18 N 1.42707 * 128.13897 * 161.29320 * 16 15 14 19 19 C 1.36936 * 127.10414 * 28.31684 * 18 16 15 20 20 H 1.07998 * 120.00066 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99891 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99720 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99794 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47375 * 59.99963 * 23 21 19 25 25 H 1.48504 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47139 * 299.99449 * 23 21 19 27 27 C 1.49302 * 105.79176 * 208.30216 * 18 16 15 28 28 C 1.52128 * 111.08213 * 71.70197 * 12 11 9 29 29 N 1.28472 * 124.88123 * 255.33759 * 5 2 1 30 30 H 1.08992 * 109.47389 * 300.00274 * 1 2 3 31 31 H 1.09007 * 109.47039 * 60.00366 * 1 2 3 32 32 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46896 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47181 * 300.00026 * 3 2 1 35 35 H 1.08998 * 109.46809 * 60.00151 * 3 2 1 36 36 H 1.09004 * 109.47008 * 300.00505 * 4 2 1 37 37 H 1.09000 * 109.47011 * 60.00013 * 4 2 1 38 38 H 1.09002 * 109.47087 * 180.02562 * 4 2 1 39 39 H 1.08008 * 126.38392 * 0.03421 * 6 5 2 40 40 H 1.07999 * 127.24734 * 179.97438 * 7 6 5 41 41 H 0.97005 * 120.00343 * 359.97438 * 11 9 8 42 42 H 1.08997 * 110.41824 * 157.16484 * 13 12 11 43 43 H 1.08998 * 110.47425 * 34.67499 * 13 12 11 44 44 H 1.09002 * 110.16021 * 233.65869 * 14 13 12 45 45 H 1.08995 * 110.15555 * 111.96513 * 14 13 12 46 46 H 1.09008 * 110.97127 * 93.82557 * 15 14 13 47 47 H 1.09002 * 110.97170 * 217.58946 * 15 14 13 48 48 H 0.97004 * 119.99386 * 180.02562 * 22 21 19 49 49 H 1.08995 * 110.04853 * 127.92265 * 27 18 16 50 50 H 1.09002 * 110.04356 * 249.40300 * 27 18 16 51 51 H 1.08996 * 111.15267 * 316.05869 * 28 12 11 52 52 H 1.09005 * 111.14702 * 191.83413 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6907 1.1962 6 6 2.0054 -2.0291 1.3746 7 6 2.5348 -2.2760 2.5956 8 6 2.8613 -1.0070 3.1299 9 6 3.4704 -0.7388 4.4486 10 8 3.7400 -1.6616 5.1927 11 7 3.7274 0.5290 4.8268 12 6 4.3311 0.7951 6.1349 13 6 3.3771 0.4619 7.2619 14 6 2.4897 1.7326 7.4112 15 6 3.1165 2.8089 6.4673 16 6 4.5428 2.3380 6.3695 17 1 5.0023 2.4405 7.3526 18 7 5.5178 2.6786 5.3846 19 6 5.5920 3.8398 4.6627 20 1 4.8582 4.6176 4.8140 21 6 6.6099 4.0168 3.7355 22 7 7.5038 3.0686 3.5507 23 14 6.7115 5.6011 2.7512 24 1 6.8669 6.7507 3.6783 25 1 7.8802 5.5417 1.8370 26 1 5.4687 5.7706 1.9562 27 6 6.4404 1.5075 5.3041 28 6 5.7922 0.3722 6.1595 29 7 2.5146 -0.1096 2.2289 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7216 -1.2490 39 1 1.6407 -2.7654 0.6735 40 1 2.6773 -3.2387 3.0638 41 1 3.5127 1.2653 4.2329 42 1 3.9281 0.2729 8.1832 43 1 2.7645 -0.4009 7.0005 44 1 2.5057 2.0829 8.4432 45 1 1.4667 1.5143 7.1049 46 1 2.6344 2.7988 5.4897 47 1 3.0630 3.8005 6.9167 48 1 8.2153 3.1925 2.9030 49 1 6.5429 1.1830 4.2687 50 1 7.4161 1.7718 5.7119 51 1 5.9278 -0.6014 5.6885 52 1 6.1847 0.3730 7.1764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990913617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:07 Heat of formation + Delta-G solvation = 81.333456 kcal Electronic energy + Delta-G solvation = -32664.014962 eV Core-core repulsion = 28666.413728 eV Total energy + Delta-G solvation = -3997.601235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.59109 -40.26021 -37.90056 -36.81696 -34.34803 -32.91754 -31.69724 -30.79770 -30.57499 -29.56641 -27.80586 -27.48962 -26.86521 -25.79692 -24.14476 -23.77432 -21.83877 -20.48652 -20.25496 -19.62518 -19.41301 -18.42979 -17.57626 -16.43276 -16.27481 -15.96806 -15.63281 -14.72161 -14.54283 -14.49133 -14.24028 -14.01157 -13.95429 -13.84597 -13.66282 -13.21008 -12.97785 -12.68595 -12.60691 -12.47203 -12.26240 -12.24704 -12.05687 -11.80216 -11.45714 -11.38754 -11.33276 -11.27594 -10.96289 -10.86789 -10.72480 -10.57363 -10.42435 -10.26357 -9.97162 -9.88579 -9.62962 -9.57201 -9.09788 -9.06562 -8.89380 -8.61501 -8.29002 -6.80931 -5.69821 -3.04020 1.92037 2.33827 2.44736 3.39795 3.44504 3.45590 3.76956 3.94971 4.15684 4.42677 4.49263 4.53288 4.71477 4.78088 4.87183 5.10082 5.18676 5.28336 5.30356 5.32175 5.40233 5.45320 5.53044 5.57409 5.58871 5.62619 5.68586 5.79772 5.84453 5.86910 5.91137 5.94430 6.03981 6.09058 6.14399 6.23056 6.33805 6.41204 6.45415 6.52131 6.57090 6.61607 6.75433 6.90987 6.93202 6.99379 7.32709 7.57652 7.66330 7.83483 8.03654 8.25083 8.34232 8.85444 9.17833 9.84610 10.54262 11.42377 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.004688 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.911845 B = 5971.420337 C = 7915.087134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.274 5.274 6 C -0.026 4.026 7 C -0.182 4.182 8 C -0.014 4.014 9 C 0.602 3.398 10 O -0.547 6.547 11 N -0.675 5.675 12 C 0.131 3.869 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.114 4.114 16 C 0.159 3.841 17 H 0.022 0.978 18 N -0.583 5.583 19 C -0.229 4.229 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.179 3.821 28 C -0.139 4.139 29 N -0.248 5.248 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.174 0.826 40 H 0.158 0.842 41 H 0.409 0.591 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.252 0.748 49 H 0.064 0.936 50 H 0.035 0.965 51 H 0.068 0.932 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.717 -8.117 -6.200 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.086 3.914 3 C -0.207 4.207 4 C -0.217 4.217 5 N -0.064 5.064 6 C -0.168 4.168 7 C -0.210 4.210 8 C -0.174 4.174 9 C 0.386 3.614 10 O -0.423 6.423 11 N -0.325 5.325 12 C 0.043 3.957 13 C -0.150 4.150 14 C -0.154 4.154 15 C -0.153 4.153 16 C 0.049 3.951 17 H 0.040 0.960 18 N -0.306 5.306 19 C -0.357 4.357 20 H 0.096 0.904 21 C -0.200 4.200 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.055 3.945 28 C -0.178 4.178 29 N -0.084 5.084 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.191 0.809 40 H 0.175 0.825 41 H 0.246 0.754 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.053 0.947 51 H 0.087 0.913 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.389 -7.405 -6.152 17.312 hybrid contribution 0.098 0.230 -0.848 0.884 sum -14.291 -7.175 -7.000 17.456 Atomic orbital electron populations 1.22238 0.92473 1.03142 1.03729 1.21010 0.94795 0.94274 0.81281 1.21980 1.03021 0.92185 1.03487 1.22230 1.02787 1.00835 0.95824 1.45792 1.42979 1.04633 1.12996 1.22639 1.07876 0.86473 0.99851 1.21713 1.05527 0.98719 0.95048 1.22122 1.07466 0.91369 0.96481 1.16862 0.77873 0.83334 0.83368 1.90722 1.54184 1.44254 1.53177 1.45564 1.60917 1.07232 1.18742 1.21588 0.91721 1.00361 0.82055 1.21896 0.97705 0.97651 0.97781 1.22812 0.98607 0.94856 0.99165 1.21837 0.96169 0.97898 0.99401 1.20836 0.90449 0.90239 0.93624 0.96036 1.43654 1.27355 1.15964 1.43651 1.18950 1.09839 0.92203 1.14677 0.90424 1.24773 0.97643 0.97942 0.99675 1.69918 1.16606 1.32369 1.37583 0.86267 0.76977 0.83041 0.79859 1.21224 1.21726 1.21229 1.22005 0.91342 0.82936 0.98198 1.22797 0.93962 1.00293 1.00794 1.73586 1.13221 1.26315 0.95233 0.91344 0.90124 0.91714 0.90956 0.90772 0.90467 0.91499 0.89871 0.91145 0.80874 0.82462 0.75408 0.91115 0.91166 0.92000 0.92347 0.91620 0.91833 0.93730 0.91731 0.94721 0.91337 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.70 37.16 0.32 -0.87 16 2 C 0.17 1.63 1.21 -131.82 -0.16 1.47 16 3 C -0.15 -1.63 8.01 37.16 0.30 -1.33 16 4 C -0.16 -1.17 8.27 37.16 0.31 -0.86 16 5 N -0.27 -3.59 3.16 -48.62 -0.15 -3.74 16 6 C -0.03 -0.31 10.52 -17.17 -0.18 -0.49 16 7 C -0.18 -2.68 10.81 -39.37 -0.43 -3.10 16 8 C -0.01 -0.25 7.13 -82.76 -0.59 -0.84 16 9 C 0.60 11.90 7.15 -12.39 -0.09 11.81 16 10 O -0.55 -11.69 15.08 5.31 0.08 -11.61 16 11 N -0.67 -13.35 4.39 -47.48 -0.21 -13.56 16 12 C 0.13 2.55 0.40 -130.63 -0.05 2.50 16 13 C -0.11 -1.88 6.05 -26.12 -0.16 -2.04 16 14 C -0.12 -1.75 6.93 -23.53 -0.16 -1.91 16 15 C -0.11 -2.01 6.47 -26.21 -0.17 -2.18 16 16 C 0.16 3.30 2.64 -68.71 -0.18 3.12 16 17 H 0.02 0.48 7.94 -51.93 -0.41 0.06 16 18 N -0.58 -14.55 3.12 -162.67 -0.51 -15.06 16 19 C -0.23 -6.19 10.29 -15.06 -0.15 -6.34 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 22 N -0.92 -26.86 10.55 55.49 0.59 -26.27 16 23 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 C 0.18 4.45 5.33 -0.75 0.00 4.45 16 28 C -0.14 -2.93 6.19 -25.44 -0.16 -3.09 16 29 N -0.25 -4.14 10.62 33.42 0.35 -3.79 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.96 7.99 -51.93 -0.41 0.55 16 36 H 0.07 0.40 7.27 -51.93 -0.38 0.02 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.17 1.35 7.47 -52.48 -0.39 0.96 16 40 H 0.16 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.41 8.50 7.53 -40.82 -0.31 8.19 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.07 1.24 6.86 -51.93 -0.36 0.88 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 1.19 7.38 -51.92 -0.38 0.81 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.06 1.80 7.05 -51.93 -0.37 1.44 16 50 H 0.03 0.93 7.98 -51.93 -0.41 0.52 16 51 H 0.07 1.49 7.17 -51.93 -0.37 1.11 16 52 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -32.30 405.91 -9.25 -41.54 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.84 Total: 9.39 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.65 Total: 0.10 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: 0.07 Total: -62.41 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.30 -9.25 -41.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990913617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.877 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds