Wall clock time and date at job start Wed Apr 1 2020 04:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47176 * 239.99959 * 2 1 3 5 5 N 1.46502 * 109.46593 * 120.00222 * 2 1 3 6 6 C 1.35031 * 124.88844 * 75.00270 * 5 2 1 7 7 C 1.35355 * 107.22979 * 180.02562 * 6 5 2 8 8 C 1.41502 * 105.50496 * 0.02562 * 7 6 5 9 9 C 1.47717 * 126.51824 * 180.02562 * 8 7 6 10 10 O 1.21564 * 120.00165 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99763 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99834 * 179.97438 * 11 9 8 13 13 C 1.51370 * 111.41524 * 291.90607 * 12 11 9 14 14 C 1.55699 * 104.53434 * 275.90369 * 13 12 11 15 15 C 1.56276 * 105.99651 * 352.81222 * 14 13 12 16 16 C 1.50527 * 101.76209 * 335.70895 * 15 14 13 17 17 H 1.09005 * 108.14432 * 293.72783 * 16 15 14 18 18 N 1.42707 * 128.13897 * 161.29320 * 16 15 14 19 19 C 1.36936 * 127.10414 * 28.31684 * 18 16 15 20 20 H 1.07998 * 120.00066 * 359.97438 * 19 18 16 21 21 C 1.38818 * 119.99891 * 180.02562 * 19 18 16 22 22 N 1.31619 * 119.99720 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99794 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47375 * 59.99963 * 23 21 19 25 25 H 1.48504 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.47139 * 299.99449 * 23 21 19 27 27 C 1.49302 * 105.79176 * 208.30216 * 18 16 15 28 28 C 1.52128 * 111.08213 * 71.70197 * 12 11 9 29 29 N 1.28472 * 124.88123 * 255.33759 * 5 2 1 30 30 H 1.08992 * 109.47389 * 300.00274 * 1 2 3 31 31 H 1.09007 * 109.47039 * 60.00366 * 1 2 3 32 32 H 1.09000 * 109.47089 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46896 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47181 * 300.00026 * 3 2 1 35 35 H 1.08998 * 109.46809 * 60.00151 * 3 2 1 36 36 H 1.09004 * 109.47008 * 300.00505 * 4 2 1 37 37 H 1.09000 * 109.47011 * 60.00013 * 4 2 1 38 38 H 1.09002 * 109.47087 * 180.02562 * 4 2 1 39 39 H 1.08008 * 126.38392 * 0.03421 * 6 5 2 40 40 H 1.07999 * 127.24734 * 179.97438 * 7 6 5 41 41 H 0.97005 * 120.00343 * 359.97438 * 11 9 8 42 42 H 1.08997 * 110.41824 * 157.16484 * 13 12 11 43 43 H 1.08998 * 110.47425 * 34.67499 * 13 12 11 44 44 H 1.09002 * 110.16021 * 233.65869 * 14 13 12 45 45 H 1.08995 * 110.15555 * 111.96513 * 14 13 12 46 46 H 1.09008 * 110.97127 * 93.82557 * 15 14 13 47 47 H 1.09002 * 110.97170 * 217.58946 * 15 14 13 48 48 H 0.97004 * 119.99386 * 180.02562 * 22 21 19 49 49 H 1.08995 * 110.04853 * 127.92265 * 27 18 16 50 50 H 1.09002 * 110.04356 * 249.40300 * 27 18 16 51 51 H 1.08996 * 111.15267 * 316.05869 * 28 12 11 52 52 H 1.09005 * 111.14702 * 191.83413 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6907 1.1962 6 6 2.0054 -2.0291 1.3746 7 6 2.5348 -2.2760 2.5956 8 6 2.8613 -1.0070 3.1299 9 6 3.4704 -0.7388 4.4486 10 8 3.7400 -1.6616 5.1927 11 7 3.7274 0.5290 4.8268 12 6 4.3311 0.7951 6.1349 13 6 3.3771 0.4619 7.2619 14 6 2.4897 1.7326 7.4112 15 6 3.1165 2.8089 6.4673 16 6 4.5428 2.3380 6.3695 17 1 5.0023 2.4405 7.3526 18 7 5.5178 2.6786 5.3846 19 6 5.5920 3.8398 4.6627 20 1 4.8582 4.6176 4.8140 21 6 6.6099 4.0168 3.7355 22 7 7.5038 3.0686 3.5507 23 14 6.7115 5.6011 2.7512 24 1 6.8669 6.7507 3.6783 25 1 7.8802 5.5417 1.8370 26 1 5.4687 5.7706 1.9562 27 6 6.4404 1.5075 5.3041 28 6 5.7922 0.3722 6.1595 29 7 2.5146 -0.1096 2.2289 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1301 -0.7216 -1.2490 39 1 1.6407 -2.7654 0.6735 40 1 2.6773 -3.2387 3.0638 41 1 3.5127 1.2653 4.2329 42 1 3.9281 0.2729 8.1832 43 1 2.7645 -0.4009 7.0005 44 1 2.5057 2.0829 8.4432 45 1 1.4667 1.5143 7.1049 46 1 2.6344 2.7988 5.4897 47 1 3.0630 3.8005 6.9167 48 1 8.2153 3.1925 2.9030 49 1 6.5429 1.1830 4.2687 50 1 7.4161 1.7718 5.7119 51 1 5.9278 -0.6014 5.6885 52 1 6.1847 0.3730 7.1764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990913617.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:06 Heat of formation + Delta-G solvation = 61.621990 kcal Electronic energy + Delta-G solvation = -32664.869715 eV Core-core repulsion = 28666.413728 eV Total energy + Delta-G solvation = -3998.455988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.68431 -41.86912 -39.41901 -37.71410 -36.16089 -34.45832 -33.60418 -32.00285 -31.85541 -31.11762 -28.55979 -28.37914 -28.30954 -27.39463 -25.99186 -25.18024 -22.93133 -22.21044 -21.58555 -21.18258 -20.61372 -19.92370 -18.76982 -18.35569 -17.39261 -17.35174 -17.02198 -16.42962 -16.13096 -15.78054 -15.69787 -15.40455 -15.27682 -15.10265 -14.63757 -14.56324 -14.23805 -14.07209 -13.96632 -13.52017 -13.28708 -13.21353 -13.11890 -13.06393 -12.96204 -12.86920 -12.76449 -12.62619 -12.23406 -12.21217 -12.16540 -12.12881 -12.06967 -11.82071 -11.68418 -11.57015 -11.37693 -11.17767 -10.78736 -10.67714 -10.21598 -10.04182 -9.81642 -8.87475 -7.83752 -5.19472 0.64928 1.25715 1.44279 1.47490 1.51706 1.53358 2.30561 2.49674 2.51320 3.08295 3.29460 3.35917 3.69256 3.71594 3.79425 3.82978 3.88386 3.94030 4.09698 4.20602 4.30469 4.39590 4.42022 4.57488 4.57823 4.59355 4.61389 4.67853 4.69083 4.77073 4.79180 4.80534 4.81860 4.84623 4.92685 4.97061 5.06150 5.08647 5.10257 5.21843 5.22579 5.22921 5.26447 5.43583 5.48102 5.54849 5.59246 5.66781 5.79280 6.00027 6.17710 6.60380 7.01306 7.03959 7.31238 7.76630 8.49437 9.28100 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.004688 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.911845 B = 5971.420337 C = 7915.087134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 C -0.149 4.149 4 C -0.155 4.155 5 N -0.268 5.268 6 C -0.002 4.002 7 C -0.201 4.201 8 C -0.051 4.051 9 C 0.598 3.402 10 O -0.570 6.570 11 N -0.677 5.677 12 C 0.135 3.865 13 C -0.107 4.107 14 C -0.102 4.102 15 C -0.110 4.110 16 C 0.147 3.853 17 H 0.024 0.976 18 N -0.597 5.597 19 C -0.232 4.232 20 H 0.087 0.913 21 C -0.063 4.063 22 N -0.952 5.952 23 Si 0.973 3.027 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.192 3.808 28 C -0.128 4.128 29 N -0.276 5.276 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.223 0.777 40 H 0.165 0.835 41 H 0.402 0.598 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.075 0.925 48 H 0.244 0.756 49 H 0.024 0.976 50 H 0.004 0.996 51 H 0.056 0.944 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.835 -8.345 -7.168 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.078 3.922 3 C -0.206 4.206 4 C -0.212 4.212 5 N -0.058 5.058 6 C -0.145 4.145 7 C -0.229 4.229 8 C -0.210 4.210 9 C 0.384 3.616 10 O -0.448 6.448 11 N -0.326 5.326 12 C 0.047 3.953 13 C -0.145 4.145 14 C -0.140 4.140 15 C -0.148 4.148 16 C 0.038 3.962 17 H 0.041 0.959 18 N -0.320 5.320 19 C -0.360 4.360 20 H 0.105 0.895 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.802 3.198 24 H -0.203 1.203 25 H -0.226 1.226 26 H -0.201 1.201 27 C 0.068 3.932 28 C -0.167 4.167 29 N -0.113 5.113 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.240 0.760 40 H 0.182 0.818 41 H 0.238 0.762 42 H 0.105 0.895 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.042 0.958 50 H 0.022 0.978 51 H 0.075 0.925 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.546 -7.620 -7.089 20.400 hybrid contribution 1.054 0.302 -0.623 1.262 sum -16.492 -7.317 -7.712 19.621 Atomic orbital electron populations 1.22231 0.90121 1.04377 1.04180 1.21467 0.96487 0.93346 0.80929 1.21981 1.00924 0.93794 1.03921 1.22264 1.01502 1.02236 0.95242 1.46286 1.41305 1.05480 1.12756 1.23279 1.05386 0.86546 0.99288 1.21948 1.06583 0.98008 0.96355 1.22018 1.09590 0.93111 0.96261 1.17199 0.77410 0.82818 0.84160 1.90680 1.55347 1.44611 1.54196 1.45602 1.60980 1.07223 1.18784 1.21643 0.91345 0.99118 0.83180 1.21901 0.97235 0.98409 0.96990 1.22749 0.98519 0.92642 1.00043 1.21846 0.93693 0.99447 0.99842 1.21069 0.91450 0.91468 0.92206 0.95888 1.43776 1.28532 1.15411 1.44258 1.19344 1.09451 0.92968 1.14278 0.89528 1.25589 0.97720 1.01089 1.01198 1.70153 1.17260 1.34325 1.38307 0.85230 0.76758 0.79501 0.78334 1.20282 1.22578 1.20147 1.21652 0.90802 0.84438 0.96329 1.22659 0.95319 0.97934 1.00818 1.73527 1.14331 1.27095 0.96324 0.93255 0.87326 0.90065 0.94138 0.87605 0.92755 0.89234 0.87180 0.93209 0.76008 0.81771 0.76242 0.89502 0.91874 0.89212 0.90873 0.92617 0.90674 0.94660 0.95805 0.97777 0.92482 0.89598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.70 71.98 0.63 -1.17 16 2 C 0.16 2.75 1.21 3.60 0.00 2.75 16 3 C -0.15 -3.21 8.01 71.98 0.58 -2.63 16 4 C -0.15 -1.78 8.27 71.98 0.60 -1.18 16 5 N -0.27 -6.75 3.16 -307.72 -0.97 -7.72 16 6 C 0.00 -0.05 10.52 83.53 0.88 0.83 16 7 C -0.20 -5.84 10.81 22.41 0.24 -5.59 16 8 C -0.05 -1.88 7.13 42.46 0.30 -1.57 16 9 C 0.60 24.65 7.15 86.75 0.62 25.27 16 10 O -0.57 -25.12 15.08 -3.92 -0.06 -25.18 16 11 N -0.68 -27.85 4.39 -422.41 -1.85 -29.71 16 12 C 0.13 5.32 0.40 4.37 0.00 5.32 16 13 C -0.11 -3.45 6.05 30.99 0.19 -3.26 16 14 C -0.10 -2.79 6.93 32.67 0.23 -2.57 16 15 C -0.11 -3.72 6.47 30.93 0.20 -3.52 16 16 C 0.15 6.12 2.64 46.47 0.12 6.25 16 17 H 0.02 0.99 7.94 -2.38 -0.02 0.97 16 18 N -0.60 -30.78 3.12 -668.56 -2.09 -32.86 16 19 C -0.23 -12.85 10.29 84.04 0.86 -11.98 16 20 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.06 -3.61 5.49 84.86 0.47 -3.14 16 22 N -0.95 -58.59 10.55 21.65 0.23 -58.36 16 23 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 27 C 0.19 10.15 5.33 86.96 0.46 10.62 16 28 C -0.13 -5.58 6.19 31.43 0.19 -5.38 16 29 N -0.28 -9.47 10.62 -48.17 -0.51 -9.98 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.40 7.99 -2.39 -0.02 1.38 16 36 H 0.09 0.65 7.27 -2.38 -0.02 0.63 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.22 2.40 7.47 -2.91 -0.02 2.38 16 40 H 0.16 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.40 17.60 7.53 -92.70 -0.70 16.90 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.06 2.16 6.86 -2.39 -0.02 2.15 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.99 7.38 -2.38 -0.02 1.98 16 47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 49 H 0.02 1.43 7.05 -2.39 -0.02 1.41 16 50 H 0.00 0.23 7.98 -2.39 -0.02 0.21 16 51 H 0.06 2.60 7.17 -2.39 -0.02 2.58 16 52 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 Total: -1.00 -75.92 405.91 3.56 -72.36 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.21 Total: 34.32 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.57 Total: 9.03 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -5.19 Total: -138.64 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.18 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.92 3.56 -72.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990913617.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.982 kcal (2) G-P(sol) polarization free energy of solvation -75.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds