Wall clock time and date at job start Wed Apr 1 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47447 * 2 1 4 4 C 1.53009 * 109.46596 * 119.99754 * 2 1 3 5 5 N 1.46503 * 109.46972 * 64.56257 * 4 2 1 6 6 N 1.28441 * 125.18673 * 272.07475 * 5 4 2 7 7 C 1.30862 * 110.92375 * 179.73567 * 6 5 4 8 8 C 1.39672 * 107.86115 * 0.45921 * 7 6 5 9 9 C 1.36590 * 125.18983 * 92.10298 * 5 4 2 10 10 C 1.47162 * 126.88531 * 0.02562 * 9 5 4 11 11 O 1.21624 * 120.00483 * 354.85182 * 10 9 5 12 12 N 1.34784 * 119.99854 * 174.85717 * 10 9 5 13 13 C 1.46504 * 119.99562 * 185.02300 * 12 10 9 14 14 C 1.51225 * 111.07881 * 73.51205 * 13 12 10 15 15 C 1.56593 * 104.17447 * 84.75393 * 14 13 12 16 16 C 1.56282 * 106.06926 * 6.58010 * 15 14 13 17 17 C 1.50514 * 101.75918 * 24.67930 * 16 15 14 18 18 H 1.08995 * 107.74527 * 66.76783 * 17 16 15 19 19 N 1.42702 * 128.17335 * 198.67279 * 17 16 15 20 20 C 1.36942 * 127.10086 * 331.69610 * 19 17 16 21 21 H 1.08003 * 119.99532 * 0.02562 * 20 19 17 22 22 C 1.38803 * 120.00074 * 180.02562 * 20 19 17 23 23 N 1.31624 * 120.00204 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00096 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47041 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47297 * 120.00272 * 24 22 20 27 27 H 1.48508 * 109.47040 * 240.00233 * 24 22 20 28 28 C 1.49294 * 105.79623 * 151.73196 * 19 17 16 29 29 C 1.52143 * 111.09216 * 294.13232 * 13 12 10 30 30 H 1.08998 * 109.47448 * 300.00540 * 1 2 3 31 31 H 1.09002 * 109.46873 * 60.00009 * 1 2 3 32 32 H 1.09001 * 109.47539 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47019 * 239.99297 * 2 1 3 34 34 H 1.08994 * 109.46873 * 175.14322 * 3 2 1 35 35 H 1.09000 * 109.46561 * 295.14382 * 3 2 1 36 36 H 1.09003 * 109.46992 * 55.14001 * 3 2 1 37 37 H 1.09000 * 109.46986 * 304.55706 * 4 2 1 38 38 H 1.09004 * 109.46294 * 184.56039 * 4 2 1 39 39 H 1.08005 * 126.07008 * 180.29836 * 7 6 5 40 40 H 1.08006 * 127.31719 * 179.82789 * 8 7 6 41 41 H 0.96992 * 120.00298 * 5.01885 * 12 10 9 42 42 H 1.08997 * 110.41049 * 202.67005 * 14 13 12 43 43 H 1.09003 * 110.40910 * 325.11027 * 14 13 12 44 44 H 1.08999 * 109.73747 * 247.60823 * 15 14 13 45 45 H 1.09003 * 110.50439 * 125.95956 * 15 14 13 46 46 H 1.09000 * 110.97042 * 266.56460 * 16 15 14 47 47 H 1.08995 * 110.96893 * 142.79266 * 16 15 14 48 48 H 0.96996 * 120.00142 * 180.02562 * 23 22 20 49 49 H 1.08998 * 110.04670 * 232.07523 * 28 19 17 50 50 H 1.09000 * 110.04532 * 110.60416 * 28 19 17 51 51 H 1.09000 * 111.15097 * 43.91591 * 29 13 12 52 52 H 1.08996 * 111.14591 * 168.14592 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 7 1.6432 -2.1306 1.1957 6 7 0.5326 -2.6041 1.6339 7 6 0.4664 -3.8965 1.4394 8 6 1.6542 -4.2985 0.8243 9 6 2.3983 -3.1414 0.6726 10 6 3.7356 -3.0240 0.0696 11 8 4.2392 -1.9277 -0.0844 12 7 4.4024 -4.1315 -0.3120 13 6 5.7760 -4.0243 -0.8098 14 6 6.7426 -3.7397 0.3178 15 6 7.0744 -5.1532 0.9044 16 6 6.3945 -6.1878 -0.0494 17 6 6.3094 -5.4100 -1.3351 18 1 7.3261 -5.2459 -1.6920 19 7 5.4765 -5.6635 -2.4658 20 6 4.9920 -6.8756 -2.8797 21 1 5.2348 -7.7713 -2.3273 22 6 4.1889 -6.9530 -4.0092 23 7 3.8934 -5.8615 -4.6827 24 14 3.5274 -8.6064 -4.5734 25 1 4.0008 -9.6697 -3.6511 26 1 2.0428 -8.5731 -4.5693 27 1 4.0124 -8.8907 -5.9479 28 6 5.2432 -4.3346 -3.1048 29 6 5.8234 -3.2635 -2.1265 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1265 1.4436 0.0870 35 1 1.7495 1.9305 -0.9303 36 1 1.6074 1.9808 0.8433 37 1 1.6113 -0.2567 2.1374 38 1 3.1268 -0.6510 1.2911 39 1 -0.3589 -4.5387 1.7093 40 1 1.9310 -5.2990 0.5261 41 1 3.9728 -4.9994 -0.2569 42 1 7.6505 -3.2759 -0.0677 43 1 6.2757 -3.0992 1.0661 44 1 6.6617 -5.2409 1.9093 45 1 8.1523 -5.3142 0.9260 46 1 5.4012 -6.4561 0.3106 47 1 7.0167 -7.0745 -0.1703 48 1 3.3319 -5.9156 -5.4718 49 1 4.1750 -4.1709 -3.2474 50 1 5.7604 -4.2847 -4.0630 51 1 5.1890 -2.3778 -2.0920 52 1 6.8473 -3.0015 -2.3927 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990952413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:17 Heat of formation + Delta-G solvation = 74.536140 kcal Electronic energy + Delta-G solvation = -32835.367627 eV Core-core repulsion = 28837.471638 eV Total energy + Delta-G solvation = -3997.895988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.42644 -40.40353 -37.95016 -36.52655 -34.46070 -33.22277 -31.96976 -31.79012 -30.72063 -29.59355 -27.24499 -26.98971 -26.55089 -25.83373 -24.11773 -23.21344 -21.53573 -20.88656 -20.54652 -19.88800 -19.41037 -18.72731 -17.83236 -16.52241 -16.01389 -15.93366 -15.69876 -15.05881 -14.74958 -14.62283 -14.40014 -14.29561 -13.92712 -13.89794 -13.67793 -13.34077 -13.15155 -12.73263 -12.59568 -12.36680 -12.32563 -12.09059 -11.94212 -11.44744 -11.42617 -11.37842 -11.07898 -11.03666 -10.96735 -10.86982 -10.82681 -10.65255 -10.54294 -10.30199 -10.05012 -10.02031 -9.73288 -9.69749 -9.21205 -9.05550 -8.87172 -8.70075 -8.50614 -6.90340 -5.77966 -3.13118 1.48289 2.51007 2.75355 3.35663 3.41561 3.44156 3.53037 3.57515 4.41626 4.52961 4.57497 4.64954 4.87559 4.89937 4.98671 5.16322 5.18877 5.28053 5.29735 5.44383 5.45280 5.54494 5.56037 5.58783 5.65748 5.72711 5.76704 5.78089 5.85449 5.90252 5.90856 5.95178 5.99528 6.09297 6.17118 6.21844 6.23803 6.25196 6.31162 6.37312 6.45700 6.61059 6.63792 6.79534 6.85240 6.87049 7.11289 7.48730 7.57834 7.75098 7.90986 8.16077 8.20209 8.54563 9.09577 9.76321 10.44754 11.34146 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.003982 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.553230 B = 7029.295354 C = 7866.646289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.123 3.877 5 N -0.254 5.254 6 N -0.282 5.282 7 C -0.008 4.008 8 C -0.188 4.188 9 C -0.030 4.030 10 C 0.589 3.411 11 O -0.548 6.548 12 N -0.671 5.671 13 C 0.133 3.867 14 C -0.111 4.111 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.160 3.840 18 H 0.023 0.977 19 N -0.584 5.584 20 C -0.233 4.233 21 H 0.080 0.920 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.908 3.092 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.178 3.822 29 C -0.141 4.141 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.116 0.884 39 H 0.183 0.817 40 H 0.160 0.840 41 H 0.405 0.595 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.252 0.748 49 H 0.064 0.936 50 H 0.035 0.965 51 H 0.075 0.925 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.396 8.450 13.052 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.199 4.199 4 C 0.003 3.997 5 N -0.042 5.042 6 N -0.114 5.114 7 C -0.184 4.184 8 C -0.217 4.217 9 C -0.158 4.158 10 C 0.374 3.626 11 O -0.428 6.428 12 N -0.321 5.321 13 C 0.045 3.955 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.154 4.154 17 C 0.050 3.950 18 H 0.041 0.959 19 N -0.307 5.307 20 C -0.360 4.360 21 H 0.098 0.902 22 C -0.199 4.199 23 N -0.563 5.563 24 Si 0.739 3.261 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.055 3.945 29 C -0.180 4.180 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.200 0.800 40 H 0.177 0.823 41 H 0.242 0.758 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.053 0.947 51 H 0.093 0.907 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.699 10.150 13.180 16.722 hybrid contribution -0.284 -2.090 -0.817 2.262 sum -1.983 8.061 12.363 14.891 Atomic orbital electron populations 1.21863 0.94516 1.02536 1.01529 1.21409 0.96546 0.96784 0.97899 1.21723 1.01599 0.94456 1.02073 1.22295 1.02745 0.74770 0.99877 1.45688 1.10361 1.07985 1.40140 1.73144 1.05244 1.13201 1.19807 1.23506 0.99674 0.91132 1.04086 1.22315 0.95412 0.98478 1.05500 1.21572 0.96777 0.89313 1.08168 1.16849 0.82607 0.84979 0.78151 1.90715 1.69152 1.26114 1.56781 1.45387 1.14645 1.08997 1.63050 1.21605 0.80237 1.01324 0.92348 1.22039 0.98673 0.96656 0.97610 1.22970 1.00047 0.94018 0.98469 1.21858 1.00542 0.97668 0.95377 1.20818 0.94462 0.91085 0.88657 0.95949 1.43676 1.57128 1.04007 1.25868 1.19046 1.24870 0.84064 1.08068 0.90218 1.24787 1.00188 0.97109 0.97841 1.69930 1.40972 1.25718 1.19721 0.86112 0.78517 0.83087 0.78422 1.20466 1.21754 1.21788 1.22010 0.99919 0.80447 0.92161 1.22830 1.01233 0.99401 0.94524 0.92618 0.92649 0.92124 0.90031 0.91886 0.92015 0.92609 0.88993 0.86631 0.80024 0.82274 0.75833 0.91016 0.91578 0.92262 0.91816 0.91640 0.91620 0.93710 0.91747 0.94715 0.90665 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.97 37.16 0.33 -1.36 16 2 C -0.11 -1.29 3.13 -90.62 -0.28 -1.57 16 3 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 4 C 0.12 1.54 5.20 -4.04 -0.02 1.52 16 5 N -0.25 -3.72 3.06 -57.13 -0.17 -3.90 16 6 N -0.28 -4.07 10.65 30.59 0.33 -3.75 16 7 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 8 C -0.19 -2.71 10.50 -38.99 -0.41 -3.12 16 9 C -0.03 -0.47 6.96 -82.06 -0.57 -1.04 16 10 C 0.59 10.09 7.11 -12.63 -0.09 10.00 16 11 O -0.55 -10.00 12.82 5.26 0.07 -9.93 16 12 N -0.67 -11.49 4.43 -47.71 -0.21 -11.70 16 13 C 0.13 2.31 0.41 -130.69 -0.05 2.26 16 14 C -0.11 -1.64 6.21 -25.69 -0.16 -1.80 16 15 C -0.12 -1.55 6.95 -23.03 -0.16 -1.71 16 16 C -0.12 -1.83 6.46 -26.21 -0.17 -1.99 16 17 C 0.16 3.06 2.63 -68.72 -0.18 2.88 16 18 H 0.02 0.46 7.98 -51.93 -0.41 0.05 16 19 N -0.58 -13.71 3.16 -162.68 -0.51 -14.22 16 20 C -0.23 -6.01 10.29 -15.06 -0.15 -6.16 16 21 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 22 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 23 N -0.92 -26.03 10.55 55.49 0.59 -25.45 16 24 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.18 4.20 5.33 -0.76 0.00 4.20 16 29 C -0.14 -2.73 6.14 -25.43 -0.16 -2.89 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.82 6.81 -51.93 -0.35 0.47 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.12 1.52 6.31 -51.93 -0.33 1.20 16 39 H 0.18 1.82 8.06 -52.48 -0.42 1.39 16 40 H 0.16 2.09 7.58 -52.48 -0.40 1.69 16 41 H 0.41 6.99 6.71 -40.82 -0.27 6.72 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 1.00 7.44 -51.93 -0.39 0.62 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.03 7.26 -51.93 -0.38 0.65 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.06 1.71 7.05 -51.93 -0.37 1.35 16 50 H 0.03 0.90 7.98 -51.93 -0.41 0.48 16 51 H 0.07 1.51 6.51 -51.93 -0.34 1.18 16 52 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 402.08 15.07 6.06 6.06 Total: -1.00 -29.64 402.08 -9.62 -39.26 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.69 Total: 9.66 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.04 Total: -2.29 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.01 Total: -59.01 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.64 -9.62 -39.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990952413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.795 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds