Wall clock time and date at job start Wed Apr 1 2020 04:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46869 * 2 1 4 4 C 1.53001 * 109.47430 * 240.00281 * 2 1 3 5 5 N 1.46496 * 109.47205 * 119.99717 * 2 1 3 6 6 C 1.34262 * 125.75153 * 75.27898 * 5 2 1 7 7 C 1.38046 * 107.41863 * 180.17733 * 6 5 2 8 8 C 1.47423 * 126.41675 * 179.86802 * 7 6 5 9 9 O 1.21604 * 120.00068 * 359.71661 * 8 7 6 10 10 N 1.34779 * 119.99933 * 179.71699 * 8 7 6 11 11 C 1.46496 * 120.00006 * 180.02562 * 10 8 7 12 12 C 1.51227 * 111.06723 * 281.62027 * 11 10 8 13 13 C 1.55696 * 104.60447 * 275.45836 * 12 11 10 14 14 C 1.56275 * 105.93828 * 352.74835 * 13 12 11 15 15 C 1.50738 * 101.75969 * 335.53565 * 14 13 12 16 16 H 1.08995 * 108.20938 * 293.25808 * 15 14 13 17 17 N 1.42702 * 127.97620 * 160.93537 * 15 14 13 18 18 C 1.36935 * 127.10247 * 28.89277 * 17 15 14 19 19 H 1.08005 * 119.99877 * 359.70150 * 18 17 15 20 20 C 1.38811 * 120.00369 * 179.43663 * 18 17 15 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99247 * 22 20 18 24 24 H 1.48496 * 109.47375 * 209.99772 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99467 * 22 20 18 26 26 C 1.49298 * 105.79771 * 208.62872 * 17 15 14 27 27 C 1.52127 * 111.08848 * 61.01117 * 11 10 8 28 28 C 1.41291 * 107.16832 * 359.60927 * 7 6 5 29 29 N 1.30454 * 108.02603 * 0.23930 * 28 7 6 30 30 H 1.08997 * 109.47254 * 299.99784 * 1 2 3 31 31 H 1.09002 * 109.47287 * 60.00165 * 1 2 3 32 32 H 1.08997 * 109.46673 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47257 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47539 * 300.00444 * 3 2 1 35 35 H 1.09002 * 109.47371 * 60.00382 * 3 2 1 36 36 H 1.09006 * 109.46546 * 299.99958 * 4 2 1 37 37 H 1.08998 * 109.46819 * 59.99278 * 4 2 1 38 38 H 1.08996 * 109.47108 * 179.97438 * 4 2 1 39 39 H 1.07997 * 126.29336 * 0.02830 * 6 5 2 40 40 H 0.97000 * 120.00000 * 0.02562 * 10 8 7 41 41 H 1.08997 * 110.40770 * 34.23971 * 12 11 10 42 42 H 1.09000 * 110.41086 * 156.56152 * 12 11 10 43 43 H 1.08999 * 110.15386 * 111.86772 * 13 12 11 44 44 H 1.08999 * 110.15877 * 233.63159 * 13 12 11 45 45 H 1.09005 * 110.97104 * 93.85607 * 14 13 12 46 46 H 1.08996 * 110.97800 * 217.58880 * 14 13 12 47 47 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 48 48 H 1.08999 * 110.04563 * 128.16089 * 26 17 15 49 49 H 1.08994 * 110.04963 * 249.63614 * 26 17 15 50 50 H 1.09006 * 111.15104 * 316.72365 * 27 11 10 51 51 H 1.09004 * 111.18981 * 192.51453 * 27 11 10 52 52 H 1.08005 * 125.99171 * 180.23612 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0183 -0.6905 1.1962 6 6 2.0188 -2.0191 1.3897 7 6 2.5559 -2.2545 2.6395 8 6 2.7495 -3.5704 3.2752 9 8 2.4175 -4.5832 2.6898 10 7 3.2946 -3.6509 4.5052 11 6 3.4875 -4.9587 5.1367 12 6 2.1888 -5.4844 5.7058 13 6 2.0831 -4.8283 7.1139 14 6 3.4432 -4.0955 7.3490 15 6 4.3685 -4.8670 6.4430 16 1 4.4654 -5.8787 6.8367 17 7 5.6399 -4.4629 5.9364 18 6 6.5319 -3.6094 6.5290 19 1 6.2975 -3.1602 7.4828 20 6 7.7397 -3.3258 5.9065 21 7 8.0279 -3.8776 4.7468 22 14 8.9568 -2.1621 6.7151 23 1 9.8739 -2.9351 7.5907 24 1 9.7441 -1.4631 5.6679 25 1 8.2198 -1.1628 7.5298 26 6 5.7997 -5.1678 4.6301 27 6 4.4217 -5.8319 4.3127 28 6 2.8909 -0.9983 3.1927 29 7 2.5676 -0.0770 2.3276 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7207 -1.2494 39 1 1.6621 -2.7663 0.6963 40 1 3.5591 -2.8430 4.9723 41 1 1.3492 -5.1803 5.0808 42 1 2.2237 -6.5704 5.7922 43 1 1.2620 -4.1118 7.1336 44 1 1.9326 -5.5941 7.8748 45 1 3.3800 -3.0497 7.0482 46 1 3.7583 -4.1819 8.3889 47 1 8.8720 -3.6797 4.3119 48 1 6.0588 -4.4530 3.8491 49 1 6.5732 -5.9316 4.7098 50 1 4.1880 -5.7644 3.2501 51 1 4.3962 -6.8670 4.6534 52 1 3.3365 -0.8302 4.1621 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991472587.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:47 Heat of formation + Delta-G solvation = 76.413842 kcal Electronic energy + Delta-G solvation = -32206.570462 eV Core-core repulsion = 28208.755897 eV Total energy + Delta-G solvation = -3997.814565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.41062 -40.18996 -37.80509 -36.78568 -34.37500 -32.88295 -31.70063 -30.75793 -30.29306 -29.34273 -27.81890 -27.64225 -26.87877 -25.73183 -24.02762 -23.23951 -22.16598 -20.47569 -19.99105 -19.62255 -19.45136 -18.42010 -17.52238 -16.42494 -15.98562 -15.62762 -15.52292 -14.76942 -14.62215 -14.55210 -14.36948 -14.20171 -13.89257 -13.79515 -13.65661 -13.18221 -12.79333 -12.62829 -12.58802 -12.48799 -12.41212 -12.24294 -12.12299 -11.84869 -11.55082 -11.51782 -11.33479 -11.26951 -10.96141 -10.89720 -10.80024 -10.75296 -10.39676 -10.22582 -9.95131 -9.88918 -9.63561 -9.47268 -9.46026 -8.97253 -8.62774 -8.58297 -8.22434 -6.80793 -5.70215 -3.04468 1.71999 2.27768 2.41798 3.40424 3.45609 3.47649 3.81217 3.97783 4.15635 4.38749 4.48941 4.49317 4.69807 4.74324 4.87205 5.08621 5.14588 5.26119 5.27700 5.29428 5.33764 5.37911 5.44412 5.46635 5.52049 5.55651 5.64093 5.67507 5.77403 5.80082 5.90262 5.93680 5.95276 6.02192 6.08952 6.21057 6.34746 6.37290 6.43315 6.49990 6.56623 6.59154 6.77892 6.91434 6.93027 6.99101 7.35324 7.58745 7.66911 7.67223 7.84199 8.25006 8.25719 8.91323 9.17661 9.84544 10.54407 11.41883 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.003648 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.222967 B = 7673.498462 C = 9168.634433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.178 3.822 3 C -0.144 4.144 4 C -0.163 4.163 5 N -0.355 5.355 6 C 0.121 3.879 7 C -0.282 4.282 8 C 0.595 3.405 9 O -0.561 6.561 10 N -0.684 5.684 11 C 0.134 3.866 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.023 0.977 17 N -0.583 5.583 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.917 5.917 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.281 1.281 26 C 0.180 3.820 27 C -0.142 4.142 28 C 0.083 3.917 29 N -0.297 5.297 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.181 0.819 40 H 0.399 0.601 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.252 0.748 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.077 0.923 51 H 0.062 0.938 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.238 6.027 -8.040 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.095 3.905 3 C -0.201 4.201 4 C -0.221 4.221 5 N -0.136 5.136 6 C -0.030 4.030 7 C -0.297 4.297 8 C 0.382 3.618 9 O -0.442 6.442 10 N -0.333 5.333 11 C 0.046 3.954 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.154 4.154 15 C 0.048 3.952 16 H 0.040 0.960 17 N -0.306 5.306 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.056 3.944 27 C -0.181 4.181 28 C -0.105 4.105 29 N -0.117 5.117 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.198 0.802 40 H 0.234 0.766 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.095 0.905 51 H 0.080 0.920 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.274 6.754 -8.845 19.715 hybrid contribution 1.035 0.050 0.817 1.319 sum -15.239 6.804 -8.028 18.520 Atomic orbital electron populations 1.22272 0.92825 1.03270 1.03414 1.20789 0.94428 0.93916 0.81321 1.21911 1.02449 0.92718 1.03032 1.22287 1.02741 1.01160 0.95921 1.48759 1.46528 1.04172 1.14123 1.22748 0.97066 0.86270 0.96946 1.20390 1.17039 0.94612 0.97622 1.17140 0.76922 0.86919 0.80831 1.90691 1.52944 1.36598 1.63917 1.45383 1.61850 1.09245 1.16839 1.21519 0.94170 0.83649 0.96021 1.21898 0.97449 0.99969 0.95745 1.22812 0.97086 0.98975 0.96571 1.21885 0.94445 0.99371 0.99658 1.20933 0.86546 0.96434 0.91317 0.96014 1.43647 1.14023 1.52540 1.20429 1.18994 0.95931 1.18774 1.02108 0.90378 1.24775 0.97896 1.00302 0.97059 1.69929 1.23742 1.46474 1.16208 0.86195 0.81409 0.80472 0.78117 1.21711 1.21806 1.20689 1.21986 0.90432 0.94522 0.87421 1.22820 0.97012 0.97585 1.00650 1.24114 0.97300 0.89831 0.99210 1.77114 1.18314 1.21945 0.94292 0.91492 0.90320 0.91656 0.91432 0.90983 0.90893 0.91352 0.89987 0.91199 0.80228 0.76607 0.91723 0.91251 0.92261 0.92038 0.91674 0.91857 0.93774 0.91817 0.94907 0.90457 0.91969 0.79492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.72 37.16 0.32 -0.82 16 2 C 0.18 1.59 1.23 -131.82 -0.16 1.43 16 3 C -0.14 -1.21 8.07 37.16 0.30 -0.91 16 4 C -0.16 -1.20 8.28 37.16 0.31 -0.89 16 5 N -0.36 -4.46 3.41 -48.11 -0.16 -4.62 16 6 C 0.12 1.64 10.39 -16.56 -0.17 1.47 16 7 C -0.28 -4.49 6.13 -105.07 -0.64 -5.14 16 8 C 0.59 10.86 7.20 -12.52 -0.09 10.77 16 9 O -0.56 -11.46 15.03 5.27 0.08 -11.38 16 10 N -0.68 -12.35 4.52 -47.46 -0.21 -12.56 16 11 C 0.13 2.49 0.41 -130.52 -0.05 2.44 16 12 C -0.11 -1.77 6.16 -26.19 -0.16 -1.93 16 13 C -0.12 -1.63 6.93 -23.54 -0.16 -1.80 16 14 C -0.11 -1.90 6.47 -26.11 -0.17 -2.07 16 15 C 0.16 3.17 2.70 -68.42 -0.18 2.99 16 16 H 0.02 0.47 7.99 -51.93 -0.41 0.06 16 17 N -0.58 -14.21 3.17 -162.33 -0.51 -14.72 16 18 C -0.23 -6.11 10.29 -15.06 -0.15 -6.27 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 20 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 21 N -0.92 -26.62 10.55 55.49 0.59 -26.04 16 22 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.18 4.42 5.34 -0.75 0.00 4.41 16 27 C -0.14 -2.92 6.09 -25.44 -0.15 -3.08 16 28 C 0.08 1.25 11.50 -16.98 -0.20 1.05 16 29 N -0.30 -4.36 11.56 30.86 0.36 -4.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 36 H 0.07 0.48 7.33 -51.93 -0.38 0.10 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.18 2.09 7.52 -52.49 -0.39 1.70 16 40 H 0.40 7.05 6.57 -40.82 -0.27 6.78 16 41 H 0.06 1.06 7.73 -51.93 -0.40 0.65 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.07 7.20 -51.93 -0.37 0.69 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.06 1.76 7.06 -51.93 -0.37 1.39 16 49 H 0.03 0.88 7.97 -51.93 -0.41 0.46 16 50 H 0.08 1.67 6.27 -51.93 -0.33 1.34 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.19 2.52 7.50 -52.48 -0.39 2.13 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -32.20 405.53 -9.03 -41.23 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -8.77 Total: 7.78 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.47 Total: 1.46 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.05 Total: -61.95 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.08 Total: -11.38 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.20 -9.03 -41.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991472587.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.642 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds