Wall clock time and date at job start Wed Apr 1 2020 04:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46854 * 2 1 4 4 C 1.52991 * 109.47219 * 120.00051 * 2 1 3 5 5 N 1.46494 * 109.47410 * 65.00272 * 4 2 1 6 6 C 1.34264 * 125.75815 * 125.26884 * 5 4 2 7 7 C 1.38047 * 107.41779 * 180.14907 * 6 5 4 8 8 C 1.47430 * 126.41313 * 179.87027 * 7 6 5 9 9 O 1.21602 * 119.99801 * 359.71035 * 8 7 6 10 10 N 1.34773 * 120.00034 * 179.71005 * 8 7 6 11 11 C 1.46496 * 120.00118 * 180.02562 * 10 8 7 12 12 C 1.53580 * 112.24375 * 62.34892 * 11 10 8 13 13 C 1.54225 * 106.67751 * 121.76047 * 12 11 10 14 14 C 1.54763 * 104.15644 * 24.93656 * 13 12 11 15 15 C 1.55157 * 112.64831 * 183.08038 * 11 10 8 16 16 H 1.09005 * 112.04663 * 337.46952 * 15 11 10 17 17 N 1.46976 * 107.06935 * 100.40516 * 15 11 10 18 18 C 1.36935 * 125.58277 * 177.86822 * 17 15 11 19 19 H 1.08005 * 119.99877 * 359.71121 * 18 17 15 20 20 C 1.38811 * 120.00369 * 179.44634 * 18 17 15 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47154 * 89.99247 * 22 20 18 24 24 H 1.48496 * 109.47375 * 209.99772 * 22 20 18 25 25 H 1.48502 * 109.46736 * 329.99467 * 22 20 18 26 26 C 1.47367 * 108.84083 * 357.60251 * 17 15 11 27 27 C 1.54869 * 104.82022 * 24.95163 * 26 17 15 28 28 C 1.41287 * 107.17187 * 359.60315 * 7 6 5 29 29 N 1.30452 * 108.02251 * 0.24213 * 28 7 6 30 30 H 1.09001 * 109.47190 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47398 * 299.99578 * 1 2 3 32 32 H 1.09000 * 109.47343 * 60.00214 * 1 2 3 33 33 H 1.09000 * 109.47398 * 240.00422 * 2 1 3 34 34 H 1.09000 * 109.47056 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47593 * 300.00318 * 3 2 1 36 36 H 1.09008 * 109.47345 * 59.99828 * 3 2 1 37 37 H 1.09003 * 109.47297 * 304.99765 * 4 2 1 38 38 H 1.09004 * 109.47503 * 185.00478 * 4 2 1 39 39 H 1.08000 * 126.29009 * 359.97438 * 6 5 4 40 40 H 0.97010 * 119.99733 * 359.97438 * 10 8 7 41 41 H 1.09003 * 110.01662 * 241.06002 * 12 11 10 42 42 H 1.08998 * 110.02153 * 2.40960 * 12 11 10 43 43 H 1.08994 * 110.49650 * 143.60574 * 13 12 11 44 44 H 1.08995 * 110.49100 * 266.27161 * 13 12 11 45 45 H 1.09005 * 110.66911 * 80.62288 * 14 13 12 46 46 H 1.08995 * 110.66801 * 203.59626 * 14 13 12 47 47 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.37204 * 143.77848 * 26 17 15 49 49 H 1.09001 * 110.37243 * 266.11331 * 26 17 15 50 50 H 1.08994 * 110.97208 * 81.05181 * 27 26 17 51 51 H 1.09005 * 110.96437 * 204.77694 * 27 26 17 52 52 H 1.07994 * 125.99098 * 180.20858 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 2.4864 -3.1801 1.2921 7 6 1.7251 -4.3266 1.1832 8 6 2.2204 -5.7142 1.2350 9 8 3.4080 -5.9308 1.3816 10 7 1.3570 -6.7426 1.1199 11 6 1.8490 -8.1215 1.1719 12 6 2.5040 -8.4546 2.5206 13 6 1.7280 -9.6521 3.1057 14 6 1.1227 -10.3532 1.8658 15 6 0.7242 -9.1662 0.9465 16 1 -0.2617 -8.7617 1.1756 17 7 0.8212 -9.6096 -0.4514 18 6 0.0331 -10.5610 -1.0420 19 1 -0.7356 -11.0575 -0.4684 20 6 0.2185 -10.8835 -2.3794 21 7 1.1515 -10.2743 -3.0799 22 14 -0.8570 -12.1809 -3.1853 23 1 -2.0619 -11.5347 -3.7649 24 1 -0.0921 -12.8586 -4.2626 25 1 -1.2721 -13.1807 -2.1688 26 6 1.9012 -8.8582 -1.1153 27 6 2.8506 -8.4326 0.0318 28 6 0.3817 -3.9211 1.0191 29 7 0.3501 -2.6170 1.0249 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6765 1.9564 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 1.6054 -0.2617 2.1369 38 1 3.1263 -0.6443 1.2952 39 1 3.5565 -3.1342 1.4305 40 1 0.4096 -6.5698 1.0034 41 1 3.5494 -8.7246 2.3711 42 1 2.4322 -7.5988 3.1918 43 1 2.4049 -10.3250 3.6320 44 1 0.9379 -9.3060 3.7720 45 1 1.8660 -10.9856 1.3803 46 1 0.2453 -10.9369 2.1440 47 1 1.2809 -10.4993 -4.0146 48 1 2.4267 -9.4966 -1.8254 49 1 1.4979 -7.9800 -1.6196 50 1 3.5170 -9.2490 0.3099 51 1 3.4192 -7.5437 -0.2420 52 1 -0.4698 -4.5760 0.9078 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992360464.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:53 Heat of formation + Delta-G solvation = 62.984212 kcal Electronic energy + Delta-G solvation = -31276.019476 eV Core-core repulsion = 27277.622559 eV Total energy + Delta-G solvation = -3998.396918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.49193 -39.86663 -37.80334 -36.68551 -34.19036 -33.35956 -32.32366 -31.37358 -30.43791 -29.49819 -27.45250 -26.96419 -26.64124 -25.74731 -23.78410 -22.86226 -21.58595 -20.72500 -20.48276 -19.89520 -19.37025 -18.62179 -17.79301 -16.94736 -16.07056 -15.81543 -15.49140 -15.35822 -14.88048 -14.56866 -14.38651 -14.27674 -13.93878 -13.63242 -13.45572 -13.25077 -13.00582 -12.85010 -12.74756 -12.65963 -12.41631 -12.12090 -11.87220 -11.74078 -11.58621 -11.31207 -11.20380 -11.09294 -10.95266 -10.79330 -10.70229 -10.57754 -10.46462 -10.09443 -9.99883 -9.87796 -9.67162 -9.64125 -9.56260 -9.25079 -8.76415 -8.60935 -8.36333 -6.80246 -5.60346 -3.03183 1.52101 2.16067 2.19273 3.41664 3.46723 3.48855 3.60152 3.74704 4.10027 4.29741 4.51091 4.52906 4.65385 4.74300 4.90441 4.94227 4.99427 5.13861 5.22978 5.24061 5.32561 5.36781 5.39048 5.50375 5.56669 5.60020 5.70611 5.71983 5.72704 5.87833 5.91443 5.94034 6.08041 6.11265 6.14152 6.22329 6.37122 6.41916 6.47047 6.49996 6.62037 6.67951 6.71190 6.86309 6.88534 7.07775 7.23740 7.44566 7.62000 7.69454 7.91973 8.00830 8.41671 8.68827 9.25946 9.87114 10.51762 11.42218 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.002640 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.927597 B =10602.160487 C =11848.423591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.108 4.108 3 C -0.146 4.146 4 C 0.134 3.866 5 N -0.361 5.361 6 C 0.122 3.878 7 C -0.285 4.285 8 C 0.594 3.406 9 O -0.550 6.550 10 N -0.701 5.701 11 C 0.164 3.836 12 C -0.110 4.110 13 C -0.125 4.125 14 C -0.128 4.128 15 C 0.161 3.839 16 H 0.047 0.953 17 N -0.596 5.596 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.153 3.847 27 C -0.142 4.142 28 C 0.080 3.920 29 N -0.294 5.294 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.185 0.815 40 H 0.396 0.604 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.251 0.749 48 H 0.106 0.894 49 H 0.009 0.991 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 19.385 10.910 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.127 4.127 3 C -0.204 4.204 4 C 0.013 3.987 5 N -0.140 5.140 6 C -0.028 4.028 7 C -0.300 4.300 8 C 0.381 3.619 9 O -0.428 6.428 10 N -0.350 5.350 11 C 0.077 3.923 12 C -0.149 4.149 13 C -0.163 4.163 14 C -0.168 4.168 15 C 0.053 3.947 16 H 0.065 0.935 17 N -0.320 5.320 18 C -0.347 4.347 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.568 5.568 22 Si 0.743 3.257 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.207 1.207 26 C 0.029 3.971 27 C -0.181 4.181 28 C -0.108 4.108 29 N -0.113 5.113 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.202 0.798 40 H 0.231 0.769 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.124 0.876 49 H 0.027 0.973 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.039 20.302 10.695 23.037 hybrid contribution -0.559 -1.157 -0.517 1.385 sum 1.480 19.145 10.178 21.733 Atomic orbital electron populations 1.22093 0.93619 1.04833 1.01107 1.21395 0.97985 0.96172 0.97137 1.21797 1.01006 0.94973 1.02574 1.21982 1.00716 0.75889 1.00132 1.48523 1.04978 1.06299 1.54203 1.22942 0.97539 0.86157 0.96212 1.20375 0.93581 0.94134 1.21868 1.17152 0.85665 0.83185 0.75916 1.90739 1.15816 1.85525 1.50766 1.45652 1.10360 1.05304 1.73653 1.21607 0.95558 0.79695 0.95403 1.22273 0.99561 0.97632 0.95464 1.22365 0.99003 0.97029 0.97913 1.23018 1.00386 0.98416 0.94967 1.21911 0.94229 0.91271 0.87288 0.93530 1.44543 1.38675 1.43811 1.04990 1.19027 1.10751 1.11834 0.93066 0.90553 1.24777 0.99281 1.00121 0.96479 1.69819 1.34386 1.44502 1.08136 0.86111 0.79484 0.81062 0.79064 1.21773 1.21763 1.20740 1.21952 0.87792 0.94791 0.92592 1.23327 0.97482 1.00498 0.96812 1.24150 0.97058 0.92470 0.97084 1.77016 0.98377 1.11389 1.24566 0.89164 0.93007 0.93084 0.90540 0.92409 0.91841 0.92289 0.89419 0.88375 0.79755 0.76931 0.91256 0.92345 0.92340 0.92399 0.90724 0.92461 0.93819 0.87622 0.97334 0.91547 0.91304 0.79456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.91 37.16 0.33 -0.99 16 2 C -0.11 -0.76 3.12 -90.63 -0.28 -1.04 16 3 C -0.15 -0.73 9.19 37.16 0.34 -0.39 16 4 C 0.13 0.91 5.94 -4.05 -0.02 0.89 16 5 N -0.36 -3.71 3.65 -60.81 -0.22 -3.93 16 6 C 0.12 1.39 11.25 -16.56 -0.19 1.20 16 7 C -0.28 -3.83 6.13 -105.07 -0.64 -4.48 16 8 C 0.59 9.67 7.01 -12.52 -0.09 9.58 16 9 O -0.55 -10.41 14.72 5.28 0.08 -10.33 16 10 N -0.70 -11.33 5.22 -46.41 -0.24 -11.57 16 11 C 0.16 2.98 0.75 -129.37 -0.10 2.88 16 12 C -0.11 -1.82 5.30 -25.79 -0.14 -1.96 16 13 C -0.12 -1.89 6.84 -25.16 -0.17 -2.06 16 14 C -0.13 -2.32 6.22 -24.56 -0.15 -2.47 16 15 C 0.16 3.22 3.73 -65.29 -0.24 2.97 16 16 H 0.05 0.91 7.97 -51.93 -0.41 0.50 16 17 N -0.60 -14.70 3.02 -160.78 -0.49 -15.19 16 18 C -0.22 -5.89 10.01 -15.06 -0.15 -6.04 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.77 10.07 55.49 0.56 -26.21 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.15 3.79 5.89 -2.58 -0.02 3.77 16 27 C -0.14 -2.96 5.72 -24.73 -0.14 -3.10 16 28 C 0.08 0.96 11.50 -16.98 -0.20 0.77 16 29 N -0.29 -3.51 9.52 30.86 0.29 -3.22 16 30 H 0.09 0.95 5.34 -51.93 -0.28 0.68 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.26 8.14 -51.92 -0.42 -0.16 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 39 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.40 5.67 7.45 -40.82 -0.30 5.37 16 41 H 0.07 1.19 7.37 -51.93 -0.38 0.80 16 42 H 0.06 0.95 7.60 -51.93 -0.39 0.55 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.11 2.96 5.84 -51.93 -0.30 2.65 16 49 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 51 H 0.07 1.47 6.54 -51.93 -0.34 1.13 16 52 H 0.19 1.84 7.50 -52.49 -0.39 1.44 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -32.41 403.23 -9.58 -41.99 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -8.66 Total: 6.34 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -1.95 Total: -0.88 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.10 Total: -60.11 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.41 -9.58 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992360464.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.975 kcal (2) G-P(sol) polarization free energy of solvation -32.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds