Wall clock time and date at job start Wed Apr 1 2020 04:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47474 * 2 1 4 4 C 1.52999 * 109.47096 * 120.00600 * 2 1 3 5 5 N 1.46500 * 109.47609 * 175.00049 * 4 2 1 6 6 C 1.34259 * 125.75618 * 124.99291 * 5 4 2 7 7 C 1.38053 * 107.41543 * 180.02562 * 6 5 4 8 8 C 1.47422 * 126.41282 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00165 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99774 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99885 * 179.97438 * 10 8 7 12 12 C 1.51226 * 111.06048 * 78.38621 * 11 10 8 13 13 C 1.55689 * 104.60621 * 84.53994 * 12 11 10 14 14 C 1.56273 * 105.93890 * 7.24285 * 13 12 11 15 15 C 1.50521 * 101.75828 * 24.26252 * 14 13 12 16 16 H 1.08997 * 108.14709 * 66.92614 * 15 14 13 17 17 N 1.42708 * 128.14634 * 198.70263 * 15 14 13 18 18 C 1.36944 * 127.10216 * 331.70474 * 17 15 14 19 19 H 1.07997 * 119.99761 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99837 * 179.97438 * 18 17 15 21 21 N 1.31615 * 120.00337 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99763 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46902 * 60.00615 * 22 20 18 24 24 H 1.48498 * 109.47023 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47507 * 300.00638 * 22 20 18 26 26 C 1.49365 * 105.79841 * 151.74217 * 17 15 14 27 27 C 1.52127 * 111.08486 * 298.99022 * 11 10 8 28 28 C 1.41294 * 107.16658 * 0.22881 * 7 6 5 29 29 N 1.30444 * 108.02638 * 359.61351 * 28 7 6 30 30 H 1.08998 * 109.46686 * 300.00129 * 1 2 3 31 31 H 1.09001 * 109.46859 * 60.00132 * 1 2 3 32 32 H 1.09000 * 109.47355 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47034 * 239.99749 * 2 1 3 34 34 H 1.09000 * 109.47093 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47381 * 300.00421 * 3 2 1 36 36 H 1.09007 * 109.46697 * 60.00019 * 3 2 1 37 37 H 1.09005 * 109.47553 * 54.99363 * 4 2 1 38 38 H 1.09000 * 109.47102 * 294.99885 * 4 2 1 39 39 H 1.07995 * 126.29492 * 0.04563 * 6 5 4 40 40 H 0.96996 * 120.00282 * 359.97438 * 10 8 7 41 41 H 1.09000 * 110.40504 * 203.31491 * 12 11 10 42 42 H 1.08994 * 110.41025 * 325.63335 * 12 11 10 43 43 H 1.08995 * 110.16258 * 126.36340 * 13 12 11 44 44 H 1.09009 * 110.15407 * 248.05784 * 13 12 11 45 45 H 1.08999 * 110.97313 * 142.38174 * 14 13 12 46 46 H 1.09001 * 110.97690 * 266.14693 * 14 13 12 47 47 H 0.96997 * 120.00696 * 179.97438 * 21 20 18 48 48 H 1.09002 * 110.04229 * 232.03673 * 26 17 15 49 49 H 1.09010 * 110.09345 * 110.53962 * 26 17 15 50 50 H 1.09002 * 111.15216 * 43.27968 * 27 11 10 51 51 H 1.09000 * 111.14854 * 167.46288 * 27 11 10 52 52 H 1.08004 * 125.98464 * 179.74677 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.3559 -0.3965 2.1314 7 6 5.6324 -0.6840 1.6911 8 6 6.8901 -0.3900 2.4017 9 8 6.8616 0.1582 3.4868 10 7 8.0716 -0.7298 1.8492 11 6 9.3215 -0.4371 2.5552 12 6 9.5744 -1.4455 3.6534 13 6 10.2677 -2.6411 2.9366 14 6 10.5435 -2.1634 1.4745 15 6 10.5843 -0.6682 1.6429 16 1 11.4605 -0.4176 2.2409 17 7 10.4396 0.3362 0.6394 18 6 10.7579 0.2293 -0.6882 19 1 11.1662 -0.6935 -1.0730 20 6 10.5546 1.3067 -1.5395 21 7 10.0564 2.4311 -1.0707 22 14 10.9894 1.1612 -3.3504 23 1 10.1965 0.0652 -3.9633 24 1 10.6802 2.4406 -4.0380 25 1 12.4372 0.8622 -3.4894 26 6 9.8703 1.5283 1.3363 27 6 9.4877 1.0588 2.7765 28 6 5.5078 -1.3074 0.4293 29 7 4.2377 -1.3917 0.1443 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4423 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8901 37 1 1.6053 -1.7199 1.2951 38 1 1.7517 -0.1585 2.1369 39 1 4.0940 0.0854 3.0617 40 1 8.0943 -1.1681 0.9843 41 1 10.2331 -1.0237 4.4124 42 1 8.6331 -1.7630 4.1020 43 1 11.2056 -2.8854 3.4352 44 1 9.6084 -3.5093 2.9312 45 1 11.5003 -2.5416 1.1144 46 1 9.7332 -2.4589 0.8080 47 1 9.9147 3.1841 -1.6654 48 1 8.9831 1.8804 0.8100 49 1 10.6148 2.3230 1.3878 50 1 8.5530 1.5143 3.1033 51 1 10.2911 1.2648 3.4838 52 1 6.3216 -1.6552 -0.1898 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992360476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:58 Heat of formation + Delta-G solvation = 70.962650 kcal Electronic energy + Delta-G solvation = -31950.416490 eV Core-core repulsion = 27952.365544 eV Total energy + Delta-G solvation = -3998.050947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.32041 -40.19315 -37.73111 -36.61477 -34.37816 -32.97658 -32.16195 -31.56043 -30.29284 -29.53669 -27.48387 -26.89140 -26.74545 -25.61005 -23.99971 -22.79191 -21.59942 -20.48929 -20.29053 -19.88530 -19.44883 -18.48978 -17.77752 -16.42907 -16.13122 -15.74435 -15.63046 -14.85557 -14.67614 -14.59109 -14.50781 -14.31792 -13.88940 -13.72960 -13.64527 -13.28267 -13.02365 -12.74062 -12.59664 -12.48582 -12.31868 -12.24256 -11.85781 -11.52941 -11.35787 -11.33754 -11.26134 -11.21286 -10.96626 -10.88638 -10.78273 -10.74873 -10.39908 -10.25455 -9.95832 -9.89743 -9.63985 -9.49771 -9.47531 -8.99170 -8.62955 -8.58990 -8.23506 -6.81044 -5.70195 -3.04615 1.69212 2.33224 2.40015 3.40527 3.45441 3.46700 3.80652 3.96627 4.19151 4.45317 4.49064 4.62006 4.69715 4.78508 4.85159 4.98289 5.13002 5.24489 5.26586 5.29067 5.32858 5.42145 5.49089 5.51678 5.55197 5.61418 5.67153 5.75520 5.76720 5.89776 5.92444 5.97013 6.01442 6.03150 6.08305 6.20522 6.34252 6.36854 6.42785 6.49595 6.53808 6.57753 6.77353 6.86359 6.91759 6.98414 7.34272 7.57940 7.62784 7.66617 7.83740 8.24487 8.24792 8.90058 9.17356 9.84275 10.54174 11.41713 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009573 B = 0.003636 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2924.301248 B = 7699.584472 C = 9482.759723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.136 3.864 5 N -0.362 5.362 6 C 0.119 3.881 7 C -0.282 4.282 8 C 0.595 3.405 9 O -0.561 6.561 10 N -0.684 5.684 11 C 0.135 3.865 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.022 0.978 17 N -0.583 5.583 18 C -0.231 4.231 19 H 0.078 0.922 20 C -0.003 4.003 21 N -0.917 5.917 22 Si 0.908 3.092 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.180 3.820 27 C -0.142 4.142 28 C 0.085 3.915 29 N -0.298 5.298 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.183 0.817 40 H 0.399 0.601 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.252 0.748 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.077 0.923 51 H 0.062 0.938 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.045 -7.795 6.848 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.207 4.207 4 C 0.015 3.985 5 N -0.141 5.141 6 C -0.032 4.032 7 C -0.297 4.297 8 C 0.382 3.618 9 O -0.441 6.441 10 N -0.333 5.333 11 C 0.047 3.953 12 C -0.151 4.151 13 C -0.154 4.154 14 C -0.153 4.153 15 C 0.048 3.952 16 H 0.039 0.961 17 N -0.307 5.307 18 C -0.359 4.359 19 H 0.096 0.904 20 C -0.200 4.200 21 N -0.564 5.564 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.056 3.944 27 C -0.181 4.181 28 C -0.103 4.103 29 N -0.118 5.118 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.200 0.800 40 H 0.234 0.766 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.082 0.918 49 H 0.051 0.949 50 H 0.096 0.904 51 H 0.080 0.920 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -16.055 -7.621 6.524 18.931 hybrid contribution 0.901 0.159 -0.902 1.284 sum -15.154 -7.463 5.622 17.803 Atomic orbital electron populations 1.21787 0.93941 1.02097 1.02459 1.21427 0.96086 0.97125 0.98212 1.21841 1.01825 0.95014 1.01972 1.21919 0.74294 1.02176 1.00142 1.48480 1.06639 1.44668 1.14293 1.22882 0.89129 0.96368 0.94789 1.20395 0.93850 1.16251 0.99167 1.17134 0.82385 0.77829 0.84483 1.90694 1.87624 1.44150 1.21648 1.45397 1.04371 1.60686 1.22875 1.21477 0.85589 0.94570 0.93685 1.21898 1.00382 0.95636 0.97155 1.22810 0.99734 0.97580 0.95316 1.21841 1.01359 0.96273 0.95874 1.20831 0.93625 0.90073 0.90693 0.96115 1.43668 1.74063 1.08722 1.04208 1.18946 1.36137 0.98431 0.82361 0.90440 1.24773 1.01202 0.96025 0.97998 1.69911 1.49578 1.03014 1.33855 0.86276 0.78097 0.76704 0.85107 1.21182 1.21726 1.21262 1.22001 0.97911 0.88218 0.86225 1.22820 1.01452 0.94136 0.99655 1.24117 0.94436 0.96771 0.94938 1.77115 1.04406 1.20484 1.09773 0.92377 0.91880 0.92338 0.89417 0.92317 0.92201 0.92633 0.89566 0.88513 0.79974 0.76604 0.91254 0.91686 0.92036 0.92254 0.91808 0.91695 0.93718 0.91772 0.94917 0.90448 0.91966 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.11 -0.91 3.00 -90.62 -0.27 -1.18 16 3 C -0.15 -1.41 9.08 37.15 0.34 -1.08 16 4 C 0.14 1.11 5.88 -4.04 -0.02 1.08 16 5 N -0.36 -4.34 3.10 -60.81 -0.19 -4.53 16 6 C 0.12 1.56 11.25 -16.56 -0.19 1.37 16 7 C -0.28 -4.39 6.13 -105.06 -0.64 -5.04 16 8 C 0.59 10.72 7.20 -12.52 -0.09 10.63 16 9 O -0.56 -11.34 15.03 5.28 0.08 -11.26 16 10 N -0.68 -12.24 4.52 -47.64 -0.22 -12.45 16 11 C 0.13 2.49 0.42 -130.71 -0.05 2.43 16 12 C -0.11 -1.76 6.16 -26.19 -0.16 -1.93 16 13 C -0.12 -1.62 6.93 -23.54 -0.16 -1.79 16 14 C -0.11 -1.89 6.47 -26.21 -0.17 -2.06 16 15 C 0.16 3.16 2.66 -68.72 -0.18 2.97 16 16 H 0.02 0.45 7.98 -51.93 -0.41 0.03 16 17 N -0.58 -14.16 3.18 -162.61 -0.52 -14.68 16 18 C -0.23 -6.11 10.29 -15.06 -0.15 -6.27 16 19 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 20 C 0.00 -0.09 5.49 -17.43 -0.10 -0.18 16 21 N -0.92 -26.53 10.55 55.49 0.59 -25.94 16 22 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.18 4.40 5.35 -0.72 0.00 4.39 16 27 C -0.14 -2.91 6.09 -25.44 -0.15 -3.06 16 28 C 0.09 1.26 11.50 -16.98 -0.20 1.06 16 29 N -0.30 -4.28 12.24 30.86 0.38 -3.90 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.57 8.06 -51.93 -0.42 0.15 16 39 H 0.18 1.98 8.06 -52.49 -0.42 1.55 16 40 H 0.40 6.99 6.56 -40.82 -0.27 6.73 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.05 7.73 -51.93 -0.40 0.65 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.06 7.20 -51.93 -0.37 0.68 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.06 1.76 7.04 -51.93 -0.37 1.39 16 49 H 0.03 0.87 7.99 -51.92 -0.41 0.46 16 50 H 0.08 1.66 6.27 -51.93 -0.33 1.34 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 52 H 0.19 2.50 7.50 -52.48 -0.39 2.10 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -32.01 408.46 -9.43 -41.44 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -8.82 Total: 7.62 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.87 Total: 0.86 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.04 Total: -61.51 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.01 -9.43 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992360476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.403 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds