Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 C 1.52999 * 109.47216 * 65.00024 * 3 2 1 5 5 C 1.53004 * 109.47548 * 185.00125 * 4 3 2 6 6 N 1.46497 * 109.47166 * 184.99802 * 3 2 1 7 7 C 1.35031 * 124.88929 * 275.02680 * 6 3 2 8 8 C 1.35365 * 107.23111 * 179.72386 * 7 6 3 9 9 C 1.41505 * 105.50396 * 0.41614 * 8 7 6 10 10 C 1.47697 * 126.51848 * 179.84532 * 9 8 7 11 11 O 1.21574 * 120.00493 * 359.70947 * 10 9 8 12 12 N 1.34774 * 120.00025 * 179.71364 * 10 9 8 13 13 C 1.46502 * 120.00398 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47354 * 179.97438 * 13 12 10 15 15 C 1.29452 * 117.69233 * 95.00569 * 14 13 12 16 16 C 1.50327 * 123.65264 * 180.57855 * 15 14 13 17 17 N 1.47000 * 109.16339 * 349.27440 * 16 15 14 18 18 C 1.36939 * 121.37519 * 222.96589 * 17 16 15 19 19 H 1.08005 * 119.99838 * 155.97782 * 18 17 16 20 20 C 1.38810 * 120.00205 * 335.97906 * 18 17 16 21 21 N 1.31617 * 119.99875 * 344.51418 * 20 18 17 22 22 Si 1.86807 * 119.99988 * 164.50951 * 20 18 17 23 23 H 1.48498 * 109.46949 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46820 * 120.00005 * 22 20 18 25 25 H 1.48497 * 109.46961 * 240.00068 * 22 20 18 26 26 C 1.47340 * 117.24944 * 42.95351 * 17 16 15 27 27 C 1.49965 * 117.69465 * 275.22318 * 14 13 12 28 28 N 1.28471 * 124.88515 * 95.02814 * 6 3 2 29 29 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47520 * 300.00111 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99608 * 1 2 3 32 32 H 1.08998 * 109.46960 * 240.00389 * 2 1 3 33 33 H 1.08995 * 109.46878 * 119.99667 * 2 1 3 34 34 H 1.09001 * 109.47563 * 305.00457 * 3 2 1 35 35 H 1.09007 * 109.47444 * 304.99885 * 4 3 2 36 36 H 1.09000 * 109.47664 * 64.99777 * 4 3 2 37 37 H 1.09007 * 109.46552 * 300.00306 * 5 4 3 38 38 H 1.08997 * 109.47355 * 59.99477 * 5 4 3 39 39 H 1.08999 * 109.47643 * 180.02562 * 5 4 3 40 40 H 1.07998 * 126.38187 * 359.97438 * 7 6 3 41 41 H 1.08004 * 127.24903 * 180.25456 * 8 7 6 42 42 H 0.97001 * 119.99988 * 359.97438 * 12 10 9 43 43 H 1.09004 * 109.46857 * 60.00134 * 13 12 10 44 44 H 1.08997 * 109.47563 * 300.00252 * 13 12 10 45 45 H 1.08007 * 118.17640 * 0.85757 * 15 14 13 46 46 H 1.08998 * 109.52186 * 109.18887 * 16 15 14 47 47 H 1.08999 * 109.51691 * 229.36942 * 16 15 14 48 48 H 0.97002 * 119.99820 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.78029 * 57.80236 * 26 17 16 50 50 H 1.09002 * 109.77908 * 178.61294 * 26 17 16 51 51 H 1.08998 * 109.43384 * 40.82027 * 27 14 13 52 52 H 1.09000 * 109.13218 * 281.42810 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.0353 3.6024 1.2559 6 7 3.5000 1.4443 -0.1203 7 6 4.3603 1.3162 0.9126 8 6 5.6122 1.3594 0.3995 9 6 5.4437 1.5302 -0.9951 10 6 6.5175 1.6391 -2.0033 11 8 7.6823 1.5885 -1.6588 12 7 6.2061 1.7947 -3.3053 13 6 7.2712 1.9032 -4.3054 14 6 6.6609 2.0684 -5.6733 15 6 6.5179 3.2724 -6.1269 16 6 5.9146 3.5918 -7.4663 17 7 5.7718 2.3499 -8.2397 18 6 6.0972 2.2963 -9.5688 19 1 6.3610 1.3524 -10.0225 20 6 6.0881 3.4551 -10.3329 21 7 5.4859 4.5354 -9.8828 22 14 6.9308 3.4814 -11.9999 23 1 7.5287 2.1499 -12.2733 24 1 5.9342 3.8017 -13.0532 25 1 7.9986 4.5133 -11.9985 26 6 5.2642 1.1651 -7.5258 27 6 6.2576 0.8266 -6.4111 28 7 4.1462 1.5680 -1.2238 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6053 1.9816 -0.8417 35 1 0.5562 2.0470 1.4402 36 1 2.1407 1.6420 2.1427 37 1 3.1143 3.6819 1.1231 38 1 1.5298 4.0870 0.4206 39 1 1.7473 4.0897 2.1875 40 1 4.0983 1.1970 1.9535 41 1 6.5436 1.2826 0.9408 42 1 5.2768 1.8347 -3.5803 43 1 7.8807 0.9997 -4.2865 44 1 7.8956 2.7675 -4.0790 45 1 6.8546 4.0929 -5.5106 46 1 4.9348 4.0478 -7.3250 47 1 6.5648 4.2825 -8.0031 48 1 5.4792 5.3451 -10.4169 49 1 4.2873 1.3845 -7.0951 50 1 5.1838 0.3252 -8.2158 51 1 5.7947 0.1261 -5.7161 52 1 7.1443 0.3657 -6.8462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001230691.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = 69.286740 kcal Electronic energy + Delta-G solvation = -30095.892910 eV Core-core repulsion = 26097.769291 eV Total energy + Delta-G solvation = -3998.123619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.91219 -39.36594 -37.73191 -37.34126 -34.86423 -32.89326 -32.49755 -31.76651 -31.03120 -30.52624 -29.67162 -27.47724 -26.52002 -24.43554 -23.53872 -23.04391 -22.64011 -22.32883 -21.02322 -20.36262 -19.91049 -18.19327 -17.61141 -17.04079 -16.30331 -15.80743 -15.63329 -15.31568 -15.14070 -14.88645 -14.62069 -14.34242 -14.17584 -13.99078 -13.78632 -13.52324 -13.45209 -13.07896 -13.00738 -12.84672 -12.75007 -12.43750 -12.21909 -12.13833 -11.99086 -11.62335 -11.52901 -11.45135 -11.31811 -11.19347 -11.02161 -10.89911 -10.73450 -10.38368 -10.27031 -10.06482 -9.80856 -9.56074 -9.41042 -9.21693 -8.82581 -8.66726 -8.02130 -6.72975 -5.78526 -3.17152 1.52959 2.00840 2.15894 2.66834 3.38820 3.46496 3.48702 3.49860 3.62636 3.82348 4.13923 4.36069 4.46984 4.50440 4.50688 4.57396 4.75560 4.77521 4.98398 5.02296 5.12596 5.19037 5.24407 5.34093 5.39000 5.42457 5.43910 5.45423 5.50269 5.56497 5.60809 5.63868 5.70112 5.73327 5.88436 5.99696 6.11412 6.21942 6.25595 6.38468 6.51632 6.57671 6.61800 6.76658 6.90377 7.20620 7.29153 7.36293 7.59511 7.75353 7.85026 7.87862 8.34198 8.39357 9.20863 9.83664 10.41904 11.31979 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.002111 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.109453 B =13263.056655 C =14149.956908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.146 3.854 4 C -0.135 4.135 5 C -0.159 4.159 6 N -0.273 5.273 7 C -0.020 4.020 8 C -0.180 4.180 9 C -0.016 4.016 10 C 0.600 3.400 11 O -0.541 6.541 12 N -0.707 5.707 13 C 0.157 3.843 14 C -0.165 4.165 15 C -0.125 4.125 16 C 0.194 3.806 17 N -0.595 5.595 18 C -0.244 4.244 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.910 5.910 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.144 3.856 27 C -0.090 4.090 28 N -0.257 5.257 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.407 0.593 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.041 0.959 47 H 0.093 0.907 48 H 0.253 0.747 49 H 0.023 0.977 50 H 0.057 0.943 51 H 0.053 0.947 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 -6.485 26.229 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.046 3.954 4 C -0.173 4.173 5 C -0.216 4.216 6 N -0.061 5.061 7 C -0.163 4.163 8 C -0.208 4.208 9 C -0.176 4.176 10 C 0.384 3.616 11 O -0.417 6.417 12 N -0.358 5.358 13 C 0.035 3.965 14 C -0.166 4.166 15 C -0.145 4.145 16 C 0.070 3.930 17 N -0.319 5.319 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.018 3.982 27 C -0.129 4.129 28 N -0.093 5.093 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.194 0.806 41 H 0.178 0.822 42 H 0.243 0.757 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.058 0.942 47 H 0.111 0.889 48 H 0.063 0.937 49 H 0.041 0.959 50 H 0.075 0.925 51 H 0.072 0.928 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.036 -6.262 25.487 28.099 hybrid contribution 0.585 0.101 -0.219 0.633 sum -9.451 -6.161 25.268 27.672 Atomic orbital electron populations 1.21799 0.93818 1.02777 1.02510 1.21946 0.97232 0.94485 1.03740 1.21777 0.74051 0.98460 1.01137 1.22003 1.03076 0.96645 0.95624 1.21835 1.02277 0.95021 1.02493 1.45661 1.07271 1.49752 1.03433 1.22695 0.89489 1.08567 0.95516 1.21749 0.97976 1.08110 0.92981 1.21985 0.90374 1.10465 0.94784 1.16942 0.86588 0.76581 0.81482 1.90777 1.18896 1.51418 1.80637 1.46057 1.11290 1.72622 1.05786 1.20499 0.88920 1.01838 0.85272 1.20477 1.05325 0.96019 0.94739 1.23281 0.95935 0.95777 0.99536 1.19754 0.98114 0.89343 0.85838 1.44137 1.74967 1.06120 1.06638 1.19230 1.38829 0.94688 0.84575 0.91315 1.24991 0.99854 0.97209 0.97957 1.70021 1.44590 1.02543 1.38369 0.86182 0.79040 0.77558 0.83778 1.20308 1.21788 1.21591 1.20948 0.93502 0.91078 0.92699 1.20751 1.00364 0.94289 0.97510 1.73543 1.05857 1.18584 1.11279 0.91743 0.92021 0.91945 0.90552 0.91003 0.87127 0.88811 0.90649 0.92326 0.92133 0.91866 0.80574 0.82235 0.75739 0.91417 0.91479 0.88758 0.94150 0.88881 0.93682 0.95923 0.92472 0.92824 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.67 37.16 0.36 -0.23 16 2 C -0.14 -0.73 5.73 -26.73 -0.15 -0.89 16 3 C 0.15 0.92 2.66 -67.93 -0.18 0.74 16 4 C -0.14 -0.55 4.94 -26.73 -0.13 -0.69 16 5 C -0.16 -0.87 9.77 37.16 0.36 -0.51 16 6 N -0.27 -2.55 2.81 -54.83 -0.15 -2.71 16 7 C -0.02 -0.17 9.76 -17.17 -0.17 -0.34 16 8 C -0.18 -2.05 10.81 -39.36 -0.43 -2.47 16 9 C -0.02 -0.22 7.13 -82.77 -0.59 -0.81 16 10 C 0.60 9.61 7.82 -12.40 -0.10 9.52 16 11 O -0.54 -10.11 16.93 5.30 0.09 -10.02 16 12 N -0.71 -10.78 5.55 -62.48 -0.35 -11.13 16 13 C 0.16 2.53 5.66 -5.20 -0.03 2.51 16 14 C -0.16 -2.96 5.23 -100.99 -0.53 -3.48 16 15 C -0.12 -2.45 9.47 -35.78 -0.34 -2.78 16 16 C 0.19 4.66 5.23 -5.10 -0.03 4.64 16 17 N -0.60 -15.02 3.01 -173.68 -0.52 -15.54 16 18 C -0.24 -6.72 9.71 -15.06 -0.15 -6.86 16 19 H 0.07 1.86 7.88 -52.48 -0.41 1.45 16 20 C 0.00 -0.07 5.01 -17.43 -0.09 -0.15 16 21 N -0.91 -26.32 11.08 55.49 0.61 -25.71 16 22 Si 0.90 21.85 29.58 -169.99 -5.03 16.82 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.14 3.03 6.58 -3.53 -0.02 3.00 16 27 C -0.09 -1.62 5.94 -28.19 -0.17 -1.79 16 28 N -0.26 -3.24 11.67 33.42 0.39 -2.85 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.16 6.46 -51.93 -0.34 -0.17 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 0.24 6.34 -51.92 -0.33 -0.09 16 36 H 0.07 0.24 6.80 -51.93 -0.35 -0.11 16 37 H 0.06 0.43 7.09 -51.92 -0.37 0.07 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.18 0.87 7.04 -52.49 -0.37 0.50 16 41 H 0.16 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.41 5.95 8.19 -40.82 -0.33 5.62 16 43 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 44 H 0.07 1.10 7.78 -51.93 -0.40 0.70 16 45 H 0.09 1.68 7.73 -52.48 -0.41 1.27 16 46 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 2.48 6.41 -51.93 -0.33 2.15 16 48 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 51 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 52 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 416.77 15.07 6.28 6.28 Total: -1.00 -32.72 416.77 -9.74 -42.45 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.69 Total: 3.00 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.37 Total: -0.60 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.02 Total: -57.93 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.72 -9.74 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001230691.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.739 kcal (2) G-P(sol) polarization free energy of solvation -32.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds