Wall clock time and date at job start Wed Apr 1 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 C 1.52996 * 109.47008 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47020 * 179.97438 * 4 3 2 6 6 N 1.39935 * 125.75218 * 269.96866 * 5 4 3 7 7 C 1.30453 * 108.89288 * 180.02562 * 6 5 4 8 8 C 1.41283 * 108.02422 * 0.02562 * 7 6 5 9 9 C 1.47429 * 126.41225 * 180.26257 * 8 7 6 10 10 O 1.21609 * 120.00051 * 179.67972 * 9 8 7 11 11 N 1.34779 * 120.00417 * 359.69002 * 9 8 7 12 12 C 1.46496 * 120.00180 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.46935 * 179.97438 * 12 11 9 14 14 C 1.29456 * 117.69210 * 94.99427 * 13 12 11 15 15 C 1.50327 * 123.65123 * 180.85551 * 14 13 12 16 16 N 1.47010 * 109.16200 * 349.03095 * 15 14 13 17 17 C 1.36943 * 121.37012 * 222.96484 * 16 15 14 18 18 H 1.08001 * 119.99694 * 155.97033 * 17 16 15 19 19 C 1.38811 * 120.00231 * 335.97384 * 17 16 15 20 20 N 1.31623 * 119.99547 * 344.51277 * 19 17 16 21 21 Si 1.86799 * 120.00318 * 164.51292 * 19 17 16 22 22 H 1.48502 * 109.46810 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47184 * 119.99897 * 21 19 17 24 24 H 1.48494 * 109.47176 * 240.00303 * 21 19 17 25 25 C 1.47334 * 117.25350 * 42.94475 * 16 15 14 26 26 C 1.49964 * 117.69592 * 274.73623 * 13 12 11 27 27 C 1.34261 * 125.75241 * 90.00179 * 5 4 3 28 28 C 1.50693 * 126.29472 * 359.95105 * 27 5 4 29 29 H 1.09002 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47600 * 300.00253 * 1 2 3 31 31 H 1.09001 * 109.47385 * 60.00768 * 1 2 3 32 32 H 1.08998 * 109.47397 * 239.99268 * 2 1 3 33 33 H 1.09000 * 109.46721 * 119.99584 * 2 1 3 34 34 H 1.08995 * 109.47147 * 59.99469 * 3 2 1 35 35 H 1.09000 * 109.47040 * 299.99388 * 3 2 1 36 36 H 1.08995 * 109.47600 * 59.99747 * 4 3 2 37 37 H 1.09005 * 109.47169 * 299.99688 * 4 3 2 38 38 H 1.07997 * 125.98228 * 180.02562 * 7 6 5 39 39 H 0.96998 * 119.99405 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.47310 * 299.99119 * 12 11 9 41 41 H 1.08995 * 109.47381 * 59.99709 * 12 11 9 42 42 H 1.07999 * 118.17811 * 0.88560 * 14 13 12 43 43 H 1.08998 * 109.51785 * 108.93007 * 15 14 13 44 44 H 1.08996 * 109.52538 * 229.12390 * 15 14 13 45 45 H 0.97006 * 119.99353 * 179.97438 * 20 19 17 46 46 H 1.08997 * 109.77957 * 57.81217 * 25 16 15 47 47 H 1.09004 * 109.78005 * 178.62125 * 25 16 15 48 48 H 1.09000 * 109.31676 * 281.29105 * 26 13 12 49 49 H 1.09008 * 109.31347 * 40.72006 * 26 13 12 50 50 H 1.08999 * 109.47506 * 270.00811 * 28 27 5 51 51 H 1.08999 * 109.46919 * 30.00465 * 28 27 5 52 52 H 1.09001 * 109.47465 * 150.00760 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8238 0.0000 6 7 4.3318 3.5937 -1.1360 7 6 4.7481 4.7709 -0.7581 8 6 4.7573 4.7988 0.6544 9 6 5.1535 5.9361 1.5047 10 8 5.1111 5.8337 2.7157 11 7 5.5625 7.0895 0.9400 12 6 5.9567 8.2194 1.7849 13 6 6.3697 9.3779 0.9140 14 6 5.4764 10.2747 0.6423 15 6 5.7369 11.4735 -0.2265 16 7 7.1817 11.5856 -0.4735 17 6 7.8229 12.7943 -0.4168 18 1 8.8828 12.8343 -0.2130 19 6 7.1107 13.9681 -0.6211 20 7 5.9116 13.9246 -1.1621 21 14 7.8539 15.6095 -0.1281 22 1 9.2022 15.3877 0.4532 23 1 7.9687 16.4804 -1.3254 24 1 6.9818 16.2652 0.8792 25 6 7.9115 10.3440 -0.7841 26 6 7.7879 9.4137 0.4280 27 6 4.3193 3.5640 1.0893 28 6 4.1629 3.1273 2.5230 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.6765 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8890 37 1 3.9329 0.9288 0.8909 38 1 5.0354 5.5820 -1.4108 39 1 5.5965 7.1711 -0.0260 40 1 5.1149 8.5166 2.4103 41 1 6.7936 7.9250 2.4182 42 1 4.4892 10.1552 1.0637 43 1 5.2132 11.3563 -1.1752 44 1 5.3826 12.3726 0.2776 45 1 5.4137 14.7448 -1.3045 46 1 7.4756 9.8701 -1.6636 47 1 8.9619 10.5697 -0.9683 48 1 8.4347 9.7715 1.2291 49 1 8.0963 8.4082 0.1413 50 1 3.1565 3.3650 2.8677 51 1 4.3271 2.0521 2.5953 52 1 4.8919 3.6487 3.1433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001355241.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:07 Heat of formation + Delta-G solvation = 57.722640 kcal Electronic energy + Delta-G solvation = -29610.674140 eV Core-core repulsion = 25612.049064 eV Total energy + Delta-G solvation = -3998.625076 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.69680 -39.19451 -37.65438 -36.49437 -34.88944 -33.47895 -32.73632 -32.13656 -30.88285 -29.73836 -29.07905 -27.77293 -26.59296 -24.73866 -24.01945 -22.77765 -22.41563 -21.82056 -21.10204 -20.36365 -19.77092 -17.89057 -17.52493 -16.46343 -16.01896 -15.85739 -15.63475 -15.48653 -15.09212 -14.75803 -14.72695 -14.12081 -14.07123 -13.79395 -13.62507 -13.52708 -13.33289 -13.29585 -13.15264 -12.96637 -12.82328 -12.42415 -12.22266 -12.02189 -11.94484 -11.91487 -11.65966 -11.54047 -11.32411 -11.21669 -11.01840 -10.90660 -10.74103 -10.37025 -10.27320 -9.82378 -9.81490 -9.63653 -9.56428 -8.99835 -8.67950 -8.63614 -8.03672 -6.74019 -5.79586 -3.18242 1.33838 2.02147 2.04653 2.67414 3.38253 3.46062 3.48120 3.50546 3.68622 4.07530 4.16261 4.31539 4.42351 4.49834 4.50091 4.68541 4.73151 4.83498 4.95019 5.03988 5.15549 5.19355 5.21039 5.27860 5.32882 5.36054 5.38007 5.43141 5.55003 5.58619 5.62671 5.66695 5.74757 5.83139 5.88528 6.00881 6.10617 6.20089 6.23444 6.35671 6.51033 6.60163 6.64016 6.75410 6.88753 7.18896 7.27765 7.33513 7.35921 7.73030 7.75621 7.84009 8.38346 8.41355 9.19875 9.82680 10.40603 11.30861 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024600 B = 0.001731 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.939523 B =16167.852943 C =16472.685496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.138 4.138 4 C 0.128 3.872 5 N -0.361 5.361 6 N -0.298 5.298 7 C 0.085 3.915 8 C -0.295 4.295 9 C 0.592 3.408 10 O -0.556 6.556 11 N -0.717 5.717 12 C 0.161 3.839 13 C -0.166 4.166 14 C -0.125 4.125 15 C 0.194 3.806 16 N -0.595 5.595 17 C -0.245 4.245 18 H 0.069 0.931 19 C -0.002 4.002 20 N -0.910 5.910 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.144 3.856 26 C -0.090 4.090 27 C 0.156 3.844 28 C -0.098 4.098 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.190 0.810 39 H 0.400 0.600 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.093 0.907 45 H 0.253 0.747 46 H 0.024 0.976 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.085 0.915 51 H 0.068 0.932 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 -28.365 3.409 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.176 4.176 4 C 0.007 3.993 5 N -0.141 5.141 6 N -0.116 5.116 7 C -0.103 4.103 8 C -0.310 4.310 9 C 0.380 3.620 10 O -0.436 6.436 11 N -0.367 5.367 12 C 0.038 3.962 13 C -0.167 4.167 14 C -0.145 4.145 15 C 0.069 3.931 16 N -0.318 5.318 17 C -0.374 4.374 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.017 3.983 26 C -0.129 4.129 27 C 0.023 3.977 28 C -0.156 4.156 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.207 0.793 39 H 0.234 0.766 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.111 0.889 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.087 0.913 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.033 -29.157 3.221 30.415 hybrid contribution 0.394 1.506 0.326 1.591 sum -7.640 -27.651 3.548 28.906 Atomic orbital electron populations 1.21755 0.95197 1.01919 1.02171 1.21444 0.96576 0.95382 1.02459 1.22043 0.93531 0.98273 1.03775 1.21852 0.95112 0.77582 1.04757 1.48520 1.49949 1.12218 1.03402 1.77192 1.22541 1.04524 1.07372 1.24075 0.96723 0.95569 0.93940 1.20045 1.20952 0.96452 0.93541 1.17213 0.76391 0.81524 0.86866 1.90710 1.55829 1.82908 1.14175 1.45933 1.67326 1.12827 1.10596 1.20423 0.99423 0.84242 0.92108 1.20508 0.96788 0.96476 1.02920 1.23278 0.97304 0.97150 0.96798 1.19761 0.85002 0.93335 0.95020 1.44135 1.04159 1.02498 1.81051 1.19233 0.93797 0.82877 1.41505 0.91316 1.24986 0.97402 0.98024 0.99538 1.70023 1.13052 1.26698 1.45730 0.86185 0.78521 0.84004 0.77866 1.20302 1.21781 1.21603 1.20995 0.96417 0.87699 0.93186 1.20786 0.93058 0.99076 0.99978 1.21500 0.94373 0.90708 0.91069 1.20679 1.05057 1.01357 0.88554 0.92417 0.92563 0.92537 0.91502 0.91583 0.91140 0.90681 0.88332 0.88682 0.79290 0.76612 0.91711 0.91646 0.88780 0.94116 0.88922 0.93676 0.95836 0.92504 0.91744 0.92855 0.89624 0.91344 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.47 5.93 -26.73 -0.16 -0.63 16 3 C -0.14 -0.76 5.54 -26.73 -0.15 -0.91 16 4 C 0.13 0.78 6.21 -4.04 -0.03 0.75 16 5 N -0.36 -3.58 3.58 -56.61 -0.20 -3.78 16 6 N -0.30 -3.52 12.50 30.86 0.39 -3.13 16 7 C 0.08 0.96 11.50 -16.98 -0.20 0.76 16 8 C -0.30 -3.68 6.13 -105.07 -0.64 -4.32 16 9 C 0.59 8.49 7.81 -12.52 -0.10 8.39 16 10 O -0.56 -9.36 14.84 5.27 0.08 -9.28 16 11 N -0.72 -9.67 5.54 -62.56 -0.35 -10.02 16 12 C 0.16 2.42 5.66 -5.19 -0.03 2.39 16 13 C -0.17 -2.83 5.22 -100.99 -0.53 -3.36 16 14 C -0.12 -2.35 9.47 -35.78 -0.34 -2.69 16 15 C 0.19 4.54 5.23 -5.10 -0.03 4.51 16 16 N -0.60 -14.70 3.01 -173.56 -0.52 -15.22 16 17 C -0.24 -6.66 9.71 -15.06 -0.15 -6.81 16 18 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 19 C 0.00 -0.05 5.01 -17.43 -0.09 -0.13 16 20 N -0.91 -26.06 11.08 55.49 0.61 -25.45 16 21 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C 0.14 2.92 6.59 -3.44 -0.02 2.90 16 26 C -0.09 -1.55 5.95 -28.09 -0.17 -1.72 16 27 C 0.16 1.69 7.01 -81.60 -0.57 1.11 16 28 C -0.10 -0.83 9.56 36.00 0.34 -0.49 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.38 7.02 -51.93 -0.36 0.01 16 38 H 0.19 1.65 7.50 -52.49 -0.39 1.25 16 39 H 0.40 4.75 7.42 -40.82 -0.30 4.44 16 40 H 0.06 1.01 7.78 -51.93 -0.40 0.61 16 41 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 42 H 0.09 1.61 7.73 -52.49 -0.41 1.20 16 43 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.09 2.43 6.41 -51.93 -0.33 2.10 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.07 0.38 7.05 -51.93 -0.37 0.02 16 52 H 0.11 1.12 6.51 -51.93 -0.34 0.78 16 LS Contribution 419.42 15.07 6.32 6.32 Total: -1.00 -32.69 419.42 -9.96 -42.65 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.79 Total: 1.77 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.47 Total: -0.51 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.07 Total: -57.59 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.69 -9.96 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001355241.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.370 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds