Wall clock time and date at job start Wed Apr 1 2020 04:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46654 * 2 1 4 4 C 1.52996 * 109.46976 * 239.99774 * 2 1 3 5 5 N 1.46496 * 109.47174 * 119.99767 * 2 1 3 6 6 C 1.35031 * 124.88619 * 75.00191 * 5 2 1 7 7 C 1.35365 * 107.23428 * 179.73579 * 6 5 2 8 8 C 1.41504 * 105.50017 * 359.97438 * 7 6 5 9 9 C 1.47705 * 126.51806 * 179.97438 * 8 7 6 10 10 O 1.21567 * 120.00520 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99786 * 180.02562 * 9 8 7 12 12 C 1.46502 * 119.99692 * 180.02562 * 11 9 8 13 13 H 1.08996 * 115.55432 * 350.68495 * 12 11 9 14 14 C 1.53032 * 117.50122 * 136.41439 * 12 11 9 15 15 C 1.52817 * 117.50116 * 204.99808 * 12 11 9 16 16 C 1.53187 * 117.71388 * 144.89759 * 15 12 11 17 17 C 1.53352 * 108.76771 * 158.89066 * 16 15 12 18 18 N 1.46841 * 108.81815 * 51.30843 * 17 16 15 19 19 C 1.36931 * 120.38290 * 123.12107 * 18 17 16 20 20 H 1.07997 * 120.00380 * 208.88943 * 19 18 17 21 21 C 1.38814 * 120.00174 * 28.88576 * 19 18 17 22 22 N 1.31623 * 119.99471 * 17.85312 * 21 19 18 23 23 Si 1.86798 * 120.00224 * 197.85281 * 21 19 18 24 24 H 1.48502 * 109.47283 * 59.99976 * 23 21 19 25 25 H 1.48506 * 109.47035 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46930 * 299.99991 * 23 21 19 27 27 C 1.46845 * 119.22989 * 303.09970 * 18 17 16 28 28 C 1.53184 * 117.71466 * 0.14125 * 15 12 11 29 29 N 1.28466 * 124.88449 * 254.69970 * 5 2 1 30 30 H 1.09005 * 109.47171 * 300.00024 * 1 2 3 31 31 H 1.09001 * 109.47186 * 60.00252 * 1 2 3 32 32 H 1.09005 * 109.46882 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46499 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47118 * 299.99790 * 3 2 1 35 35 H 1.08988 * 109.47240 * 60.00183 * 3 2 1 36 36 H 1.08992 * 109.47693 * 299.99827 * 4 2 1 37 37 H 1.09001 * 109.47184 * 59.99973 * 4 2 1 38 38 H 1.09001 * 109.46989 * 179.97438 * 4 2 1 39 39 H 1.08006 * 126.38252 * 359.73518 * 6 5 2 40 40 H 1.07995 * 127.25044 * 179.97438 * 7 6 5 41 41 H 0.96999 * 120.00268 * 0.02562 * 11 9 8 42 42 H 1.08994 * 117.50332 * 214.95257 * 14 12 11 43 43 H 1.08998 * 117.50385 * 0.02562 * 14 12 11 44 44 H 1.08995 * 109.58917 * 278.67463 * 16 15 12 45 45 H 1.08997 * 109.58564 * 39.10938 * 16 15 12 46 46 H 1.09005 * 109.58055 * 291.50598 * 17 16 15 47 47 H 1.09001 * 109.58036 * 171.11368 * 17 16 15 48 48 H 0.97011 * 119.99298 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.58628 * 297.10423 * 27 18 17 50 50 H 1.09007 * 109.57677 * 176.70470 * 27 18 17 51 51 H 1.09004 * 109.58725 * 320.90599 * 28 15 12 52 52 H 1.09004 * 109.58666 * 81.32820 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6905 1.1962 6 6 2.0056 -2.0289 1.3746 7 6 2.5411 -2.2763 2.5929 8 6 2.8722 -1.0076 3.1251 9 6 3.4877 -0.7397 4.4408 10 8 3.7598 -1.6626 5.1839 11 7 3.7477 0.5279 4.8176 12 6 4.3587 0.7935 6.1224 13 1 4.4276 -0.0634 6.7924 14 6 5.4860 1.8269 6.1775 15 6 4.1103 2.1636 6.7521 16 6 3.9738 2.2329 8.2763 17 6 4.2604 3.6686 8.7326 18 7 3.4340 4.5905 7.9430 19 6 2.5741 5.4556 8.5652 20 1 1.6749 5.7786 8.0618 21 6 2.8581 5.9175 9.8431 22 7 4.0814 5.8241 10.3198 23 14 1.5042 6.6716 10.8860 24 1 0.4269 5.6716 11.0972 25 1 2.0622 7.0836 12.1991 26 1 0.9474 7.8596 10.1906 27 6 3.5409 4.5741 6.4786 28 6 3.2394 3.1568 5.9765 29 7 2.5255 -0.1102 2.2240 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6767 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.6367 -2.7650 0.6755 40 1 2.6854 -3.2391 3.0604 41 1 3.5302 1.2644 4.2250 42 1 6.2970 1.6499 6.8839 43 1 5.7728 2.3094 5.2432 44 1 2.9609 1.9529 8.5656 45 1 4.6893 1.5528 8.7385 46 1 5.3146 3.8979 8.5765 47 1 4.0149 3.7719 9.7896 48 1 4.2799 6.1472 11.2127 49 1 4.5503 4.8594 6.1827 50 1 2.8217 5.2735 6.0521 51 1 3.4674 3.0897 4.9127 52 1 2.1869 2.9267 6.1419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016652069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:06 Heat of formation + Delta-G solvation = 85.575526 kcal Electronic energy + Delta-G solvation = -30722.986704 eV Core-core repulsion = 26725.569419 eV Total energy + Delta-G solvation = -3997.417285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.95828 -39.72637 -38.25801 -37.17867 -35.40709 -33.09038 -31.62272 -31.15149 -30.74101 -29.90072 -28.21901 -28.05505 -27.80073 -24.70467 -24.27943 -22.41767 -22.34949 -21.49364 -20.66387 -20.33574 -19.65956 -18.21454 -17.87593 -16.74833 -16.37260 -16.31746 -15.89146 -14.82403 -14.79573 -14.73711 -14.36832 -14.14211 -14.00738 -13.94705 -13.50304 -13.44306 -13.23027 -13.04071 -12.92985 -12.85518 -12.60940 -12.57762 -12.34317 -12.16541 -11.76299 -11.69368 -11.57357 -11.53359 -11.25703 -10.99155 -10.91421 -10.68431 -10.40291 -10.28169 -10.10964 -9.90873 -9.62783 -9.56980 -9.43327 -9.28159 -9.24797 -8.40485 -8.34320 -6.59372 -5.74846 -3.17730 1.48860 1.97663 2.09435 3.19945 3.40296 3.41328 3.46795 3.48484 3.84421 4.13111 4.24040 4.29363 4.45741 4.48832 4.53332 4.85017 4.90487 5.03123 5.07172 5.09547 5.12500 5.21239 5.22586 5.24402 5.25494 5.36892 5.43279 5.50917 5.57381 5.57750 5.59822 5.70062 5.75355 5.95222 6.13809 6.14937 6.17889 6.24247 6.35973 6.51811 6.56778 6.66640 6.69895 6.72072 6.76522 6.90487 7.02801 7.42345 7.53305 7.72211 7.82534 7.83235 8.30230 8.50842 9.26090 9.89870 10.46791 11.32839 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.002314 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.827398 B =12099.832150 C =13116.747439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.159 4.159 5 N -0.271 5.271 6 C -0.021 4.021 7 C -0.178 4.178 8 C -0.018 4.018 9 C 0.606 3.394 10 O -0.538 6.538 11 N -0.682 5.682 12 C 0.068 3.932 13 H 0.133 0.867 14 C -0.181 4.181 15 C -0.096 4.096 16 C -0.105 4.105 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.253 4.253 20 H 0.063 0.937 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.151 3.849 28 C -0.097 4.097 29 N -0.255 5.255 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.178 0.822 40 H 0.161 0.839 41 H 0.406 0.594 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.018 0.982 47 H 0.090 0.910 48 H 0.254 0.746 49 H 0.019 0.981 50 H 0.053 0.947 51 H 0.046 0.954 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -14.480 -24.647 28.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.061 5.061 6 C -0.163 4.163 7 C -0.206 4.206 8 C -0.178 4.178 9 C 0.391 3.609 10 O -0.413 6.413 11 N -0.331 5.331 12 C -0.037 4.037 13 H 0.151 0.849 14 C -0.220 4.220 15 C -0.097 4.097 16 C -0.145 4.145 17 C 0.047 3.953 18 N -0.311 5.311 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.024 3.976 28 C -0.137 4.137 29 N -0.091 5.091 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.195 0.805 40 H 0.178 0.822 41 H 0.242 0.758 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.108 0.892 48 H 0.064 0.936 49 H 0.037 0.963 50 H 0.072 0.928 51 H 0.064 0.936 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.791 -13.851 -24.254 28.187 hybrid contribution -0.728 -0.214 0.315 0.822 sum -4.520 -14.065 -23.939 28.131 Atomic orbital electron populations 1.22260 0.92134 1.03431 1.03991 1.21068 0.95126 0.94140 0.81141 1.21982 1.02488 0.92372 1.03778 1.22237 1.02573 1.01081 0.95815 1.45805 1.42446 1.04777 1.13077 1.22705 1.07304 0.86370 0.99959 1.21757 1.05145 0.98752 0.94969 1.21945 1.07992 0.91675 0.96181 1.16855 0.77539 0.82968 0.83574 1.90773 1.53369 1.44075 1.53045 1.45250 1.61559 1.07605 1.18707 1.21934 1.00559 0.95027 0.86182 0.84906 1.23530 0.93010 1.02656 1.02804 1.21955 0.96935 0.93994 0.96818 1.21881 1.00918 1.01183 0.90506 1.20767 0.92908 0.83949 0.97653 1.43963 1.47546 1.40306 0.99328 1.19139 0.99430 1.20812 0.98894 0.91906 1.25042 0.95788 0.99006 0.99784 1.70033 1.17167 1.49866 1.17488 0.86394 0.81705 0.79064 0.79749 1.21043 1.21657 1.20938 1.20832 0.97942 0.92548 0.86280 1.21623 0.98713 0.97159 0.96163 1.73474 1.13540 1.26428 0.95654 0.91182 0.89899 0.91542 0.91312 0.90499 0.90441 0.91330 0.89683 0.91262 0.80533 0.82174 0.75759 0.88264 0.89080 0.92115 0.92968 0.96355 0.89192 0.93605 0.96330 0.92819 0.93571 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 8.70 37.16 0.32 -0.46 16 2 C 0.17 1.00 1.21 -131.82 -0.16 0.84 16 3 C -0.15 -0.93 8.00 37.16 0.30 -0.63 16 4 C -0.16 -0.60 8.27 37.16 0.31 -0.29 16 5 N -0.27 -2.49 3.16 -48.62 -0.15 -2.65 16 6 C -0.02 -0.18 10.52 -17.17 -0.18 -0.36 16 7 C -0.18 -2.02 10.81 -39.36 -0.43 -2.44 16 8 C -0.02 -0.24 7.13 -82.76 -0.59 -0.83 16 9 C 0.61 9.63 7.82 -12.39 -0.10 9.54 16 10 O -0.54 -10.02 16.49 5.31 0.09 -9.93 16 11 N -0.68 -10.18 5.34 -54.87 -0.29 -10.48 16 12 C 0.07 1.09 6.14 -68.01 -0.42 0.67 16 13 H 0.13 2.24 7.40 -51.93 -0.38 1.86 16 14 C -0.18 -2.80 9.86 -26.79 -0.26 -3.07 16 15 C -0.10 -1.66 1.94 -154.49 -0.30 -1.96 16 16 C -0.11 -2.08 5.83 -26.45 -0.15 -2.23 16 17 C 0.17 4.16 5.40 -3.67 -0.02 4.14 16 18 N -0.59 -14.84 2.94 -172.26 -0.51 -15.35 16 19 C -0.25 -6.99 9.54 -15.06 -0.14 -7.13 16 20 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.07 4.88 -17.43 -0.09 -0.02 16 22 N -0.90 -26.29 11.23 55.49 0.62 -25.67 16 23 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.15 3.17 6.51 -3.67 -0.02 3.15 16 28 C -0.10 -1.71 5.37 -26.46 -0.14 -1.85 16 29 N -0.26 -3.08 10.61 33.42 0.35 -2.73 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.61 8.00 -51.94 -0.42 0.19 16 36 H 0.07 0.20 7.27 -51.93 -0.38 -0.18 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.18 0.84 7.47 -52.48 -0.39 0.44 16 40 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.41 5.59 6.84 -40.82 -0.28 5.31 16 42 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 2.42 5.93 -51.93 -0.31 2.11 16 48 H 0.25 7.18 8.31 -40.81 -0.34 6.84 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 1.11 7.92 -51.92 -0.41 0.70 16 51 H 0.05 0.69 6.75 -51.93 -0.35 0.34 16 52 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 414.43 15.07 6.25 6.25 Total: -1.00 -33.08 414.43 -9.55 -42.63 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -8.81 Total: 4.03 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -2.08 Total: -2.95 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.03 Total: -56.87 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.08 -9.55 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016652069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.205 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds