Wall clock time and date at job start Wed Apr 1 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47167 * 2 1 4 4 C 1.53001 * 109.47042 * 119.99931 * 2 1 3 5 5 N 1.46502 * 109.46980 * 175.00015 * 4 2 1 6 6 C 1.34262 * 125.75399 * 125.01781 * 5 4 2 7 7 C 1.38045 * 107.41458 * 179.97438 * 6 5 4 8 8 C 1.47434 * 126.41069 * 179.97438 * 7 6 5 9 9 O 1.21608 * 120.00024 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00124 * 180.02562 * 10 8 7 12 12 H 1.09002 * 115.55236 * 350.70923 * 11 10 8 13 13 C 1.53031 * 117.50296 * 136.38868 * 11 10 8 14 14 C 1.52814 * 117.50119 * 204.97390 * 11 10 8 15 15 C 1.53184 * 117.71162 * 144.90086 * 14 11 10 16 16 C 1.53354 * 108.76988 * 158.89070 * 15 14 11 17 17 N 1.46839 * 108.81764 * 51.30620 * 16 15 14 18 18 C 1.36937 * 120.38579 * 123.11904 * 17 16 15 19 19 H 1.07996 * 120.00085 * 330.67079 * 18 17 16 20 20 C 1.38815 * 119.99723 * 150.66635 * 18 17 16 21 21 N 1.31616 * 120.00399 * 342.83762 * 20 18 17 22 22 Si 1.86803 * 119.99766 * 162.84012 * 20 18 17 23 23 H 1.48499 * 109.46909 * 89.99809 * 22 20 18 24 24 H 1.48497 * 109.47047 * 209.99591 * 22 20 18 25 25 H 1.48504 * 109.47072 * 329.99771 * 22 20 18 26 26 C 1.46850 * 119.23187 * 303.10041 * 17 16 15 27 27 C 1.53188 * 117.71451 * 0.14029 * 14 11 10 28 28 C 1.41282 * 107.17252 * 0.02562 * 7 6 5 29 29 N 1.30448 * 108.02465 * 359.97438 * 28 7 6 30 30 H 1.09003 * 109.47543 * 299.99982 * 1 2 3 31 31 H 1.09006 * 109.47302 * 59.99507 * 1 2 3 32 32 H 1.09001 * 109.47622 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47398 * 240.00551 * 2 1 3 34 34 H 1.08994 * 109.46818 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47194 * 300.00290 * 3 2 1 36 36 H 1.09002 * 109.46512 * 60.00008 * 3 2 1 37 37 H 1.08998 * 109.47166 * 55.00335 * 4 2 1 38 38 H 1.08997 * 109.47349 * 294.99667 * 4 2 1 39 39 H 1.07997 * 126.29030 * 359.96078 * 6 5 4 40 40 H 0.96996 * 119.99835 * 0.02562 * 10 8 7 41 41 H 1.08997 * 117.50288 * 214.95054 * 13 11 10 42 42 H 1.09001 * 117.49963 * 359.97438 * 13 11 10 43 43 H 1.09004 * 109.58842 * 278.67048 * 15 14 11 44 44 H 1.08999 * 109.58969 * 39.10302 * 15 14 11 45 45 H 1.09000 * 109.57823 * 291.50155 * 16 15 14 46 46 H 1.09000 * 109.57722 * 171.10079 * 16 15 14 47 47 H 0.96996 * 120.00595 * 179.97438 * 21 20 18 48 48 H 1.09002 * 109.57803 * 297.11013 * 26 17 16 49 49 H 1.09001 * 109.69090 * 176.77228 * 26 17 16 50 50 H 1.08993 * 109.58563 * 320.89689 * 27 14 11 51 51 H 1.08996 * 109.58332 * 81.33288 * 27 14 11 52 52 H 1.08007 * 125.98683 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.3559 -0.3966 2.1315 7 6 5.6322 -0.6849 1.6917 8 6 6.8900 -0.3914 2.4026 9 8 6.8615 0.1571 3.4876 10 7 8.0715 -0.7311 1.8501 11 6 9.3213 -0.4400 2.5568 12 1 9.2254 0.1889 3.4420 13 6 10.3915 -1.5336 2.5795 14 6 10.5883 -0.2878 1.7162 15 6 11.6288 0.7384 2.1754 16 6 12.9846 0.3772 1.5564 17 7 12.8122 0.1991 0.1091 18 6 13.5509 0.9415 -0.7730 19 1 13.8859 1.9308 -0.4982 20 6 13.8693 0.4225 -2.0205 21 7 13.7688 -0.8712 -2.2403 22 14 14.4405 1.5605 -3.3874 23 1 15.9192 1.6891 -3.3389 24 1 14.0354 0.9986 -4.7009 25 1 13.8212 2.8983 -3.2090 26 6 11.8385 -0.7847 -0.3814 27 6 10.4594 -0.4470 0.1980 28 6 5.5075 -1.3128 0.4322 29 7 4.2376 -1.3918 0.1445 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6053 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 4.0940 0.0861 3.0614 40 1 8.0942 -1.1683 0.9846 41 1 11.0001 -1.6237 3.4793 42 1 10.1654 -2.4697 2.0690 43 1 11.3304 1.7338 1.8461 44 1 11.7065 0.7188 3.2624 45 1 13.3522 -0.5494 1.9973 46 1 13.6970 1.1808 1.7432 47 1 13.9909 -1.2339 -3.1121 48 1 12.1350 -1.7833 -0.0604 49 1 11.7962 -0.7484 -1.4700 50 1 9.7612 -1.2532 -0.0268 51 1 10.0981 0.4845 -0.2376 52 1 6.3211 -1.6662 -0.1841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016902842.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:36 Heat of formation + Delta-G solvation = 55.451873 kcal Electronic energy + Delta-G solvation = -30171.984742 eV Core-core repulsion = 26173.261198 eV Total energy + Delta-G solvation = -3998.723544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.42156 -40.83906 -39.44409 -37.39718 -37.05236 -34.54462 -33.43207 -32.83637 -31.71248 -31.25389 -29.85232 -28.13413 -27.52863 -26.20377 -24.51354 -23.97543 -23.02406 -22.60823 -21.80952 -21.34720 -20.63371 -19.78707 -18.98452 -18.26989 -17.18782 -17.11670 -16.78211 -16.67993 -15.89648 -15.67347 -15.61612 -15.45171 -15.38344 -15.15816 -14.83536 -14.60348 -14.44873 -14.11863 -13.92627 -13.79162 -13.66947 -13.30519 -13.19172 -13.03227 -12.94437 -12.87501 -12.56946 -12.48813 -12.32269 -12.30210 -12.12092 -12.00390 -11.96396 -11.75247 -11.62537 -11.33120 -11.22396 -10.95003 -10.64599 -10.55709 -10.46103 -9.85111 -9.46912 -8.58137 -7.84112 -5.30353 0.53373 1.14563 1.38263 1.46728 1.48522 1.58065 2.22867 2.39791 2.53018 3.04449 3.30832 3.36999 3.68518 3.76035 3.80435 3.83797 3.86850 3.92645 4.03071 4.05832 4.12341 4.17875 4.23815 4.44507 4.54992 4.56886 4.59729 4.66024 4.74700 4.75676 4.76765 4.89126 4.89369 4.95723 4.97495 5.03201 5.04183 5.13363 5.17764 5.25894 5.27466 5.34893 5.36688 5.40662 5.41951 5.56457 5.60650 5.68367 5.82410 5.88783 6.43855 6.48982 6.63903 7.19292 7.28962 7.91627 8.42549 9.20663 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.002170 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.856527 B =12901.556588 C =14223.221639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.147 4.147 4 C 0.124 3.876 5 N -0.350 5.350 6 C 0.136 3.864 7 C -0.315 4.315 8 C 0.599 3.401 9 O -0.591 6.591 10 N -0.687 5.687 11 C 0.089 3.911 12 H 0.127 0.873 13 C -0.170 4.170 14 C -0.117 4.117 15 C -0.087 4.087 16 C 0.146 3.854 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.062 0.938 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.273 1.273 26 C 0.180 3.820 27 C -0.088 4.088 28 C 0.080 3.920 29 N -0.315 5.315 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.128 0.872 39 H 0.207 0.793 40 H 0.409 0.591 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.082 0.918 45 H 0.018 0.982 46 H 0.051 0.949 47 H 0.250 0.750 48 H -0.001 1.001 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.048 0.952 52 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.481 -0.845 8.930 28.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.204 4.204 4 C 0.005 3.995 5 N -0.128 5.128 6 C -0.018 4.018 7 C -0.330 4.330 8 C 0.389 3.611 9 O -0.472 6.472 10 N -0.335 5.335 11 C -0.017 4.017 12 H 0.145 0.855 13 C -0.209 4.209 14 C -0.118 4.118 15 C -0.126 4.126 16 C 0.020 3.980 17 N -0.331 5.331 18 C -0.392 4.392 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.791 3.209 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.198 1.198 26 C 0.054 3.946 27 C -0.128 4.128 28 C -0.107 4.107 29 N -0.135 5.135 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.224 0.776 40 H 0.246 0.754 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.036 0.964 46 H 0.070 0.930 47 H 0.059 0.941 48 H 0.018 0.982 49 H 0.073 0.927 50 H 0.089 0.911 51 H 0.067 0.933 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -28.519 -0.931 8.672 29.823 hybrid contribution 1.582 0.383 -0.914 1.867 sum -26.937 -0.548 7.759 28.038 Atomic orbital electron populations 1.21752 0.91975 1.02932 1.03181 1.21359 0.97624 0.96081 0.97280 1.21828 0.99747 0.95985 1.02858 1.22386 0.71951 1.03779 1.01425 1.48823 1.07968 1.42834 1.13176 1.23291 0.88574 0.94658 0.95233 1.20159 0.93268 1.19329 1.00278 1.17477 0.83003 0.76688 0.83967 1.90719 1.87993 1.45588 1.22948 1.45108 1.04208 1.61103 1.23129 1.21657 0.79579 1.02321 0.98132 0.85528 1.23616 1.01316 0.93607 1.02323 1.21807 0.96976 0.99427 0.93602 1.21525 0.94422 0.97003 0.99661 1.20984 0.95129 0.97834 0.84014 1.44227 1.42873 1.45153 1.00882 1.19474 1.27519 0.95998 0.96248 0.92073 1.25760 1.00474 0.96511 1.01726 1.70164 1.53552 1.11509 1.22548 0.85353 0.77890 0.78768 0.78888 1.21194 1.21758 1.19837 1.20552 0.86436 0.89576 0.98035 1.21532 0.98206 1.00335 0.92684 1.24378 0.95090 0.96504 0.94741 1.77123 1.04595 1.20827 1.10967 0.90908 0.91980 0.91541 0.91626 0.95164 0.92182 0.91095 0.88029 0.85395 0.77592 0.75435 0.87198 0.88216 0.92861 0.89995 0.96406 0.93025 0.94113 0.98240 0.92685 0.91061 0.93289 0.77875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.19 71.98 0.66 -0.11 16 2 C -0.10 -1.04 3.00 -10.79 -0.03 -1.07 16 3 C -0.15 -1.76 9.08 71.99 0.65 -1.10 16 4 C 0.12 1.09 5.88 86.38 0.51 1.60 16 5 N -0.35 -5.70 3.10 -346.30 -1.07 -6.78 16 6 C 0.14 2.42 11.25 84.28 0.95 3.37 16 7 C -0.32 -7.06 6.13 -20.15 -0.12 -7.18 16 8 C 0.60 16.41 7.81 86.67 0.68 17.08 16 9 O -0.59 -19.83 16.46 -4.06 -0.07 -19.90 16 10 N -0.69 -17.50 5.34 -446.04 -2.38 -19.89 16 11 C 0.09 2.49 6.14 44.94 0.28 2.76 16 12 H 0.13 3.74 7.40 -2.39 -0.02 3.72 16 13 C -0.17 -4.59 9.86 30.55 0.30 -4.29 16 14 C -0.12 -3.70 1.94 -52.17 -0.10 -3.80 16 15 C -0.09 -2.93 5.83 30.77 0.18 -2.75 16 16 C 0.15 6.06 6.52 86.43 0.56 6.62 16 17 N -0.61 -30.56 2.93 -698.88 -2.05 -32.61 16 18 C -0.26 -14.53 9.54 84.03 0.80 -13.73 16 19 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 20 C -0.05 -2.76 4.90 84.86 0.42 -2.35 16 21 N -0.93 -54.94 11.21 21.65 0.24 -54.70 16 22 Si 0.96 45.14 29.59 68.60 2.03 47.17 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 26 C 0.18 8.50 5.39 86.43 0.47 8.97 16 27 C -0.09 -3.18 5.37 30.78 0.17 -3.02 16 28 C 0.08 1.64 11.50 85.65 0.99 2.63 16 29 N -0.32 -6.65 12.24 -56.28 -0.69 -7.34 16 30 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 32 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.07 0.96 8.04 -2.39 -0.02 0.94 16 34 H 0.03 0.52 7.75 -2.39 -0.02 0.50 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.13 0.41 8.06 -2.39 -0.02 0.39 16 39 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.41 8.96 6.07 -92.71 -0.56 8.40 16 41 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 2.29 8.10 -2.39 -0.02 2.27 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 2.12 7.92 -2.39 -0.02 2.10 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 49 H 0.05 2.97 5.95 -2.39 -0.01 2.95 16 50 H 0.07 2.13 6.75 -2.39 -0.02 2.11 16 51 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 52 H 0.20 3.19 7.50 -2.91 -0.02 3.17 16 Total: -1.00 -72.70 417.04 3.70 -69.00 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.34 Total: 21.40 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 7.35 Total: 3.64 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -5.95 Total: -121.31 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.07 Total: -19.90 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -72.70 3.70 -69.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016902842.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.451 kcal (2) G-P(sol) polarization free energy of solvation -72.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds