Wall clock time and date at job start Wed Apr 1 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47262 * 2 1 4 4 C 1.53001 * 109.47135 * 239.99774 * 2 1 3 5 5 N 1.46503 * 109.46981 * 120.00168 * 2 1 3 6 6 C 1.34251 * 125.75676 * 75.00337 * 5 2 1 7 7 C 1.38049 * 107.41782 * 180.02562 * 6 5 2 8 8 C 1.47428 * 126.41131 * 179.97438 * 7 6 5 9 9 O 1.21600 * 120.00632 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99516 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99554 * 180.02562 * 10 8 7 12 12 C 1.53143 * 109.43623 * 275.21737 * 11 10 8 13 13 C 1.55655 * 108.76457 * 185.73001 * 12 11 10 14 14 H 1.08994 * 112.43116 * 187.56403 * 13 12 11 15 15 C 1.54608 * 108.44967 * 312.85371 * 13 12 11 16 16 C 1.53794 * 104.84934 * 87.90376 * 15 13 12 17 17 C 1.54608 * 104.85214 * 359.97438 * 16 15 13 18 18 H 1.09001 * 112.19210 * 146.68804 * 17 16 15 19 19 C 1.53151 * 109.43162 * 155.00022 * 11 10 8 20 20 N 1.48290 * 106.26808 * 64.43672 * 13 12 11 21 21 C 1.36943 * 128.20734 * 107.16043 * 20 13 12 22 22 H 1.08005 * 119.99538 * 164.49643 * 21 20 13 23 23 C 1.38813 * 120.00081 * 344.49660 * 21 20 13 24 24 N 1.31616 * 119.99857 * 350.71841 * 23 21 20 25 25 Si 1.86802 * 119.99803 * 170.71923 * 23 21 20 26 26 H 1.48501 * 109.46849 * 180.02562 * 25 23 21 27 27 H 1.48495 * 109.46958 * 300.00064 * 25 23 21 28 28 H 1.48502 * 109.46668 * 60.00319 * 25 23 21 29 29 C 1.41284 * 107.16742 * 0.22336 * 7 6 5 30 30 N 1.30443 * 108.02488 * 359.61402 * 29 7 6 31 31 H 1.08997 * 109.47276 * 299.99785 * 1 2 3 32 32 H 1.09004 * 109.47456 * 60.00207 * 1 2 3 33 33 H 1.09000 * 109.46895 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47741 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47268 * 299.99909 * 3 2 1 36 36 H 1.09002 * 109.47172 * 59.99636 * 3 2 1 37 37 H 1.09000 * 109.47392 * 299.99895 * 4 2 1 38 38 H 1.08996 * 109.46933 * 60.00375 * 4 2 1 39 39 H 1.09004 * 109.47403 * 179.97438 * 4 2 1 40 40 H 1.08004 * 126.29424 * 359.97438 * 6 5 2 41 41 H 0.96997 * 120.00155 * 359.97438 * 10 8 7 42 42 H 1.08993 * 109.40325 * 35.11385 * 11 10 8 43 43 H 1.08996 * 109.57035 * 305.86870 * 12 11 10 44 44 H 1.09009 * 109.56675 * 66.22380 * 12 11 10 45 45 H 1.09005 * 110.38076 * 206.60457 * 15 13 12 46 46 H 1.08997 * 110.38290 * 328.85694 * 15 13 12 47 47 H 1.09005 * 110.43080 * 241.09700 * 16 15 13 48 48 H 1.08994 * 110.24351 * 118.80100 * 16 15 13 49 49 H 1.08998 * 109.56978 * 54.13525 * 19 11 10 50 50 H 1.09005 * 109.66721 * 293.82996 * 19 11 10 51 51 H 0.96997 * 119.99681 * 179.97438 * 24 23 21 52 52 H 1.08008 * 125.98278 * 179.74541 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0140 -2.0188 1.3919 7 6 2.5562 -2.2545 2.6394 8 6 2.7492 -3.5705 3.2753 9 8 2.4162 -4.5832 2.6904 10 7 3.2948 -3.6510 4.5051 11 6 3.4872 -4.9588 5.1368 12 6 2.1929 -5.3813 5.8379 13 6 2.4564 -6.6986 6.6242 14 1 1.5432 -7.1251 7.0390 15 6 3.2053 -7.6816 5.6950 16 6 4.6947 -7.3527 5.8916 17 6 4.7134 -6.1998 6.9216 18 1 5.5877 -6.2421 7.5711 19 6 4.6226 -4.8680 6.1606 20 7 3.4468 -6.3637 7.6758 21 6 3.2417 -6.2405 9.0241 22 1 4.0837 -6.2397 9.7006 23 6 1.9516 -6.1166 9.5214 24 7 0.9429 -5.9339 8.6960 25 14 1.6474 -6.2091 11.3622 26 1 0.1959 -6.0499 11.6326 27 1 2.1042 -7.5262 11.8738 28 1 2.4001 -5.1252 12.0433 29 6 2.8860 -0.9980 3.1948 30 7 2.5675 -0.0771 2.3276 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6767 -1.7490 -1.2492 38 1 1.6767 -0.2075 -2.1392 39 1 3.1300 -0.7209 -1.2495 40 1 1.6520 -2.7657 0.7008 41 1 3.5608 -2.8433 4.9715 42 1 3.7439 -5.6947 4.3749 43 1 1.8768 -4.5964 6.5249 44 1 1.4144 -5.5535 5.0945 45 1 3.0043 -8.7113 5.9907 46 1 2.9122 -7.5212 4.6574 47 1 5.1401 -7.0283 4.9511 48 1 5.2241 -8.2210 6.2836 49 1 4.4177 -4.0596 6.8623 50 1 5.5649 -4.6760 5.6473 51 1 0.0414 -5.8477 9.0435 52 1 3.3269 -0.8296 4.1664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021306089.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:55 Heat of formation + Delta-G solvation = 62.477670 kcal Electronic energy + Delta-G solvation = -31330.358348 eV Core-core repulsion = 27331.939465 eV Total energy + Delta-G solvation = -3998.418883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.57188 -39.67323 -38.26034 -36.97367 -34.30828 -32.57587 -31.01967 -30.63573 -30.08338 -29.11942 -29.07925 -27.91846 -27.75101 -24.73071 -23.38528 -23.26275 -22.35889 -21.11873 -19.93835 -19.54354 -19.14802 -18.58194 -17.63034 -16.73419 -15.94169 -15.88772 -15.65922 -14.93433 -14.67187 -14.45152 -14.40832 -14.04609 -14.01536 -13.63355 -13.05312 -12.95148 -12.91601 -12.73827 -12.69684 -12.66761 -12.53655 -12.23485 -11.99657 -11.83693 -11.66279 -11.64304 -11.38699 -11.31884 -11.03119 -10.92149 -10.73670 -10.59479 -10.55717 -10.08866 -9.69902 -9.65738 -9.57909 -9.47376 -9.33142 -9.27495 -8.76177 -8.61898 -8.22303 -6.76032 -5.71312 -3.06386 1.55312 2.11309 2.21601 3.41448 3.47117 3.47528 3.68537 3.78901 4.02774 4.26689 4.37316 4.50729 4.59621 4.68161 4.98214 5.02923 5.15829 5.19661 5.21846 5.29320 5.32598 5.34305 5.39505 5.44510 5.53012 5.59536 5.69741 5.75544 5.80722 5.85428 5.86161 5.99050 6.04493 6.10590 6.27418 6.37544 6.38942 6.54946 6.61859 6.75347 6.75667 6.76484 6.86636 6.94378 7.06445 7.13093 7.30983 7.48247 7.62736 7.67486 7.83837 8.04890 8.30077 8.72036 9.18635 9.80947 10.60691 11.40632 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.002441 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.936657 B =11468.767131 C =12155.150293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.177 3.823 3 C -0.143 4.143 4 C -0.162 4.162 5 N -0.354 5.354 6 C 0.123 3.877 7 C -0.286 4.286 8 C 0.590 3.410 9 O -0.556 6.556 10 N -0.718 5.718 11 C 0.149 3.851 12 C -0.119 4.119 13 C 0.182 3.818 14 H 0.110 0.890 15 C -0.143 4.143 16 C -0.130 4.130 17 C 0.151 3.849 18 H 0.068 0.932 19 C -0.134 4.134 20 N -0.585 5.585 21 C -0.224 4.224 22 H 0.073 0.927 23 C -0.004 4.004 24 N -0.909 5.909 25 Si 0.908 3.092 26 H -0.291 1.291 27 H -0.286 1.286 28 H -0.286 1.286 29 C 0.078 3.922 30 N -0.297 5.297 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.182 0.818 41 H 0.392 0.608 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.053 0.947 49 H 0.065 0.935 50 H 0.047 0.953 51 H 0.253 0.747 52 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 11.890 -19.010 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.095 3.905 3 C -0.200 4.200 4 C -0.220 4.220 5 N -0.134 5.134 6 C -0.028 4.028 7 C -0.301 4.301 8 C 0.377 3.623 9 O -0.436 6.436 10 N -0.366 5.366 11 C 0.046 3.954 12 C -0.159 4.159 13 C 0.074 3.926 14 H 0.128 0.872 15 C -0.182 4.182 16 C -0.169 4.169 17 C 0.042 3.958 18 H 0.086 0.914 19 C -0.174 4.174 20 N -0.306 5.306 21 C -0.352 4.352 22 H 0.091 0.909 23 C -0.201 4.201 24 N -0.555 5.555 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.213 1.213 28 H -0.212 1.212 29 C -0.109 4.109 30 N -0.116 5.116 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.199 0.801 41 H 0.225 0.775 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.368 12.536 -19.563 23.355 hybrid contribution -0.126 -0.388 1.385 1.443 sum 2.242 12.148 -18.178 21.979 Atomic orbital electron populations 1.22288 0.92630 1.03472 1.03569 1.20830 0.94624 0.93891 0.81191 1.21908 1.02239 0.92709 1.03190 1.22282 1.02516 1.01273 0.95966 1.48783 1.46291 1.04194 1.14108 1.22808 0.96553 0.86303 0.97112 1.20416 1.17426 0.94559 0.97658 1.17219 0.77028 0.86997 0.81026 1.90739 1.51799 1.36768 1.64248 1.46114 1.63086 1.10392 1.17044 1.21282 0.96902 0.82973 0.94229 1.22711 0.94157 1.01111 0.97949 1.21899 0.94356 0.90386 0.85949 0.87248 1.22673 0.95715 1.00125 0.99719 1.22534 0.97083 0.98818 0.98492 1.21495 0.91467 0.91186 0.91628 0.91420 1.22472 0.96032 1.01270 0.97642 1.45215 1.03322 1.79704 1.02342 1.18919 0.92441 1.43400 0.80458 0.90904 1.24829 0.96137 1.01653 0.97529 1.69874 0.98848 1.54232 1.32564 0.86272 0.76817 0.77866 0.85192 1.21726 1.21277 1.21227 1.24073 0.98033 0.89802 0.99036 1.77099 1.18272 1.21956 0.94268 0.91392 0.90198 0.91532 0.91551 0.90878 0.90855 0.91290 0.89877 0.91336 0.80062 0.77463 0.90086 0.90839 0.94063 0.92983 0.92395 0.92654 0.92797 0.91648 0.93414 0.93705 0.79521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 8.72 37.16 0.32 -0.72 16 2 C 0.18 1.33 1.23 -131.82 -0.16 1.16 16 3 C -0.14 -0.97 8.07 37.15 0.30 -0.67 16 4 C -0.16 -0.92 8.28 37.16 0.31 -0.61 16 5 N -0.35 -3.82 3.41 -48.11 -0.16 -3.99 16 6 C 0.12 1.49 10.39 -16.56 -0.17 1.31 16 7 C -0.29 -4.00 6.13 -105.07 -0.64 -4.64 16 8 C 0.59 10.03 7.78 -12.52 -0.10 9.94 16 9 O -0.56 -11.27 16.56 5.28 0.09 -11.18 16 10 N -0.72 -11.69 5.07 -54.73 -0.28 -11.97 16 11 C 0.15 2.79 2.10 -67.78 -0.14 2.64 16 12 C -0.12 -2.64 5.19 -25.24 -0.13 -2.77 16 13 C 0.18 4.26 3.23 -64.69 -0.21 4.06 16 14 H 0.11 2.96 6.34 -51.93 -0.33 2.63 16 15 C -0.14 -2.87 5.96 -25.47 -0.15 -3.02 16 16 C -0.13 -2.37 5.96 -25.47 -0.15 -2.52 16 17 C 0.15 3.02 4.28 -65.74 -0.28 2.74 16 18 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 19 C -0.13 -2.41 5.11 -26.31 -0.13 -2.54 16 20 N -0.59 -14.23 2.79 -151.62 -0.42 -14.66 16 21 C -0.22 -6.01 10.38 -15.06 -0.16 -6.16 16 22 H 0.07 1.90 7.85 -52.48 -0.41 1.49 16 23 C 0.00 -0.12 5.42 -17.43 -0.09 -0.21 16 24 N -0.91 -25.78 10.59 55.49 0.59 -25.19 16 25 Si 0.91 21.70 29.56 -169.99 -5.03 16.68 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 C 0.08 0.96 11.50 -16.98 -0.20 0.77 16 30 N -0.30 -3.69 11.56 30.86 0.36 -3.34 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 37 H 0.07 0.38 7.34 -51.93 -0.38 0.00 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.18 1.88 7.53 -52.48 -0.40 1.48 16 41 H 0.39 5.41 7.56 -40.82 -0.31 5.10 16 42 H 0.08 1.59 5.06 -51.93 -0.26 1.33 16 43 H 0.07 1.85 8.00 -51.93 -0.42 1.43 16 44 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.12 7.13 -51.93 -0.37 0.75 16 47 H 0.05 0.91 7.08 -51.93 -0.37 0.54 16 48 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 50 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 52 H 0.19 1.81 7.50 -52.48 -0.39 1.41 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -32.32 404.16 -9.24 -41.56 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -8.68 Total: 7.23 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.79 Total: -1.24 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.08 Total: -59.14 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.32 -9.24 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021306089.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.042 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds