Wall clock time and date at job start Wed Apr 1 2020 04:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47132 * 2 1 4 4 C 1.52996 * 109.47040 * 119.99976 * 2 1 3 5 5 N 1.46497 * 109.47191 * 175.00106 * 4 2 1 6 6 C 1.34261 * 125.75427 * 125.00091 * 5 4 2 7 7 C 1.38041 * 107.41767 * 179.97438 * 6 5 4 8 8 C 1.47435 * 126.41708 * 179.97438 * 7 6 5 9 9 O 1.21601 * 119.99850 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00040 * 180.02562 * 8 7 6 11 11 C 1.46498 * 120.00053 * 180.02562 * 10 8 7 12 12 C 1.53140 * 109.43723 * 119.86303 * 11 10 8 13 13 C 1.55652 * 108.76433 * 65.85859 * 12 11 10 14 14 H 1.09007 * 112.43300 * 187.56063 * 13 12 11 15 15 C 1.54602 * 108.45292 * 312.85239 * 13 12 11 16 16 C 1.53797 * 104.85033 * 87.89808 * 15 13 12 17 17 C 1.54610 * 104.84597 * 0.02562 * 16 15 13 18 18 H 1.09002 * 112.18987 * 146.68618 * 17 16 15 19 19 C 1.53152 * 109.43723 * 240.08268 * 11 10 8 20 20 N 1.48289 * 104.26183 * 25.02731 * 17 16 15 21 21 C 1.36934 * 128.21270 * 138.35985 * 20 17 16 22 22 H 1.07996 * 119.99988 * 344.94384 * 21 20 17 23 23 C 1.38819 * 120.00226 * 164.93986 * 21 20 17 24 24 N 1.31624 * 119.99558 * 351.64728 * 23 21 20 25 25 Si 1.86799 * 120.00331 * 171.65086 * 23 21 20 26 26 H 1.48495 * 109.46937 * 270.00307 * 25 23 21 27 27 H 1.48503 * 109.46981 * 29.99912 * 25 23 21 28 28 H 1.48493 * 109.47290 * 150.00059 * 25 23 21 29 29 C 1.41290 * 107.17012 * 0.22611 * 7 6 5 30 30 N 1.30449 * 108.02443 * 359.61722 * 29 7 6 31 31 H 1.08997 * 109.47584 * 300.00071 * 1 2 3 32 32 H 1.09004 * 109.47521 * 60.00225 * 1 2 3 33 33 H 1.09009 * 109.47219 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46905 * 239.99765 * 2 1 3 35 35 H 1.08997 * 109.46944 * 59.99537 * 3 2 1 36 36 H 1.08999 * 109.47039 * 180.02562 * 3 2 1 37 37 H 1.09005 * 109.47069 * 299.99833 * 3 2 1 38 38 H 1.09001 * 109.47413 * 54.99701 * 4 2 1 39 39 H 1.09007 * 109.47060 * 294.99727 * 4 2 1 40 40 H 1.07993 * 126.29400 * 359.95486 * 6 5 4 41 41 H 0.97006 * 120.00485 * 0.02562 * 10 8 7 42 42 H 1.08997 * 109.43326 * 359.97438 * 11 10 8 43 43 H 1.09007 * 109.56989 * 185.99862 * 12 11 10 44 44 H 1.09006 * 109.56843 * 306.35200 * 12 11 10 45 45 H 1.09001 * 110.38467 * 206.60287 * 15 13 12 46 46 H 1.08999 * 110.38179 * 328.85503 * 15 13 12 47 47 H 1.08998 * 110.43538 * 241.09901 * 16 15 13 48 48 H 1.09003 * 110.23868 * 118.79670 * 16 15 13 49 49 H 1.08999 * 109.57368 * 173.99967 * 19 11 10 50 50 H 1.09003 * 109.56710 * 53.63732 * 19 11 10 51 51 H 0.97001 * 119.99510 * 179.97438 * 24 23 21 52 52 H 1.08002 * 125.99265 * 179.73930 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.3559 -0.3963 2.1314 7 6 5.6322 -0.6847 1.6917 8 6 6.8901 -0.3910 2.4026 9 8 6.8615 0.1578 3.4873 10 7 8.0714 -0.7309 1.8502 11 6 9.3212 -0.4396 2.5567 12 6 10.0716 -1.7473 2.8251 13 6 10.5130 -2.3597 1.4639 14 1 10.9374 -3.3576 1.5748 15 6 9.3054 -2.3290 0.4990 16 6 9.3787 -0.9513 -0.1806 17 6 10.6246 -0.2724 0.4337 18 1 11.1331 0.3768 -0.2791 19 6 10.1883 0.4859 1.6982 20 7 11.4788 -1.4031 0.8705 21 6 12.8364 -1.5351 0.7496 22 1 13.3849 -0.8851 0.0840 23 6 13.5076 -2.5042 1.4826 24 7 12.8710 -3.1844 2.4124 25 14 15.3142 -2.8428 1.1496 26 1 15.4369 -3.8975 0.1115 27 1 15.9710 -1.5995 0.6721 28 1 15.9708 -3.3006 2.4003 29 6 5.5078 -1.3087 0.4302 30 7 4.2376 -1.3924 0.1448 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6053 -1.7198 1.2952 39 1 1.7516 -0.1582 2.1370 40 1 4.0940 0.0868 3.0611 41 1 8.0942 -1.1683 0.9847 42 1 9.0965 0.0502 3.5042 43 1 10.9472 -1.5458 3.4424 44 1 9.4132 -2.4471 3.3398 45 1 9.3932 -3.1213 -0.2444 46 1 8.3731 -2.4321 1.0542 47 1 8.4826 -0.3707 0.0385 48 1 9.5026 -1.0681 -1.2573 49 1 11.0692 0.7897 2.2638 50 1 9.6123 1.3670 1.4150 51 1 13.3399 -3.8619 2.9243 52 1 6.3215 -1.6573 -0.1885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021424041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:02 Heat of formation + Delta-G solvation = 126.861477 kcal Electronic energy + Delta-G solvation = -31796.578624 eV Core-core repulsion = 27800.951632 eV Total energy + Delta-G solvation = -3995.626991 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.58003 -40.65879 -37.98104 -36.77933 -34.09553 -32.49588 -32.05059 -31.28007 -30.28394 -29.96974 -28.92108 -27.63648 -26.78729 -24.66464 -23.29207 -22.91190 -21.82976 -20.95833 -20.48950 -19.84916 -19.52287 -19.15451 -17.92606 -16.94175 -16.24897 -15.92661 -15.20689 -14.91823 -14.84179 -14.63533 -14.33557 -14.16434 -13.69823 -13.60080 -13.30552 -13.17904 -12.90932 -12.82736 -12.75667 -12.64023 -12.47522 -12.07979 -12.01427 -11.67531 -11.57562 -11.51435 -11.47650 -11.35834 -10.94311 -10.91398 -10.87594 -10.61364 -10.33460 -10.23654 -9.99613 -9.71006 -9.67868 -9.45863 -9.35637 -9.33018 -8.75244 -8.58505 -8.06326 -6.79948 -5.76152 -3.11443 1.52843 2.16787 2.19565 3.39066 3.45118 3.46491 3.77311 3.79253 4.08171 4.31545 4.46757 4.47641 4.62834 4.70871 4.82764 4.99943 5.11286 5.17798 5.18436 5.25058 5.33040 5.36265 5.39296 5.45857 5.48704 5.61713 5.63796 5.68880 5.74407 5.80704 5.85719 5.86775 5.92385 6.05276 6.08907 6.20422 6.34704 6.37001 6.56391 6.61155 6.64584 6.69670 6.72821 6.84409 6.94865 7.06904 7.21216 7.44088 7.54761 7.58186 7.75940 8.08419 8.23894 8.74775 9.13827 9.75834 10.54369 11.35991 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028058 B = 0.002355 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.684335 B =11887.382376 C =12083.340039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.134 3.866 5 N -0.360 5.360 6 C 0.121 3.879 7 C -0.285 4.285 8 C 0.575 3.425 9 O -0.567 6.567 10 N -0.731 5.731 11 C 0.144 3.856 12 C -0.124 4.124 13 C 0.181 3.819 14 H 0.113 0.887 15 C -0.172 4.172 16 C -0.161 4.161 17 C 0.150 3.850 18 H 0.067 0.933 19 C -0.137 4.137 20 N -0.584 5.584 21 C -0.223 4.223 22 H 0.075 0.925 23 C -0.005 4.005 24 N -0.911 5.911 25 Si 0.910 3.090 26 H -0.290 1.290 27 H -0.282 1.282 28 H -0.292 1.292 29 C 0.077 3.923 30 N -0.294 5.294 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.185 0.815 41 H 0.424 0.576 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.047 0.953 51 H 0.253 0.747 52 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.077 5.399 -4.021 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.013 3.987 5 N -0.139 5.139 6 C -0.030 4.030 7 C -0.299 4.299 8 C 0.363 3.637 9 O -0.448 6.448 10 N -0.401 5.401 11 C 0.040 3.960 12 C -0.164 4.164 13 C 0.074 3.926 14 H 0.131 0.869 15 C -0.211 4.211 16 C -0.201 4.201 17 C 0.042 3.958 18 H 0.085 0.915 19 C -0.177 4.177 20 N -0.305 5.305 21 C -0.351 4.351 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.557 5.557 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.207 1.207 28 H -0.218 1.218 29 C -0.111 4.111 30 N -0.114 5.114 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.202 0.798 41 H 0.283 0.717 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.066 0.934 51 H 0.063 0.937 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -23.840 5.227 -4.098 24.747 hybrid contribution 1.539 -0.095 0.208 1.556 sum -22.300 5.132 -3.890 23.211 Atomic orbital electron populations 1.21790 0.93822 1.02243 1.02494 1.21427 0.96221 0.97004 0.98191 1.21841 1.01572 0.95147 1.02035 1.21961 0.74126 1.02415 1.00195 1.48507 1.06735 1.44389 1.14272 1.22931 0.89073 0.96250 0.94725 1.20429 0.94014 1.16341 0.99154 1.17506 0.83402 0.78158 0.84676 1.90702 1.87862 1.44570 1.21679 1.48700 1.05312 1.60795 1.25314 1.21064 0.82297 0.97189 0.95453 1.22699 0.99033 0.94265 1.00373 1.21921 0.85701 0.96797 0.88194 0.86902 1.23281 1.01072 0.96491 1.00296 1.23168 0.99777 0.96969 1.00157 1.21528 0.90367 0.90536 0.93387 0.91532 1.22501 0.99130 0.96970 0.99143 1.45180 1.02025 1.14258 1.69043 1.18984 0.80842 1.16140 1.19140 0.90736 1.24841 0.97853 1.00445 0.97068 1.69852 1.35305 1.26821 1.23770 0.86153 0.84730 0.78024 0.77022 1.21714 1.20733 1.21796 1.24100 0.94575 0.97214 0.95202 1.77115 1.04250 1.20034 1.09988 0.92332 0.91851 0.92235 0.89391 0.92570 0.92503 0.92205 0.89368 0.88381 0.79814 0.71722 0.89956 0.89755 0.93954 0.92124 0.90615 0.90431 0.92068 0.90858 0.93400 0.93675 0.79668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.19 37.16 0.34 -0.29 16 2 C -0.11 -0.69 3.00 -90.62 -0.27 -0.96 16 3 C -0.15 -1.04 9.08 37.16 0.34 -0.70 16 4 C 0.13 0.88 5.88 -4.05 -0.02 0.86 16 5 N -0.36 -3.68 3.10 -60.81 -0.19 -3.86 16 6 C 0.12 1.39 11.25 -16.56 -0.19 1.20 16 7 C -0.28 -3.94 6.13 -105.06 -0.64 -4.58 16 8 C 0.58 9.75 7.81 -12.52 -0.10 9.65 16 9 O -0.57 -11.34 16.22 5.28 0.09 -11.26 16 10 N -0.73 -12.15 2.85 -54.74 -0.16 -12.31 16 11 C 0.14 2.74 3.15 -67.78 -0.21 2.52 16 12 C -0.12 -2.63 5.50 -25.25 -0.14 -2.77 16 13 C 0.18 4.00 3.23 -64.67 -0.21 3.80 16 14 H 0.11 2.89 6.29 -51.92 -0.33 2.56 16 15 C -0.17 -3.02 5.75 -25.47 -0.15 -3.17 16 16 C -0.16 -2.64 5.75 -25.47 -0.15 -2.79 16 17 C 0.15 2.93 4.28 -65.70 -0.28 2.65 16 18 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 19 C -0.14 -2.57 5.51 -26.26 -0.14 -2.72 16 20 N -0.58 -13.80 2.80 -151.55 -0.42 -14.22 16 21 C -0.22 -5.88 10.38 -15.06 -0.16 -6.03 16 22 H 0.07 1.93 7.84 -52.49 -0.41 1.52 16 23 C -0.01 -0.14 5.43 -17.43 -0.09 -0.23 16 24 N -0.91 -25.26 10.61 55.49 0.59 -24.67 16 25 Si 0.91 21.46 29.56 -169.99 -5.03 16.44 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.08 0.96 11.50 -16.98 -0.20 0.76 16 30 N -0.29 -3.60 12.24 30.86 0.38 -3.22 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 34 H 0.09 0.71 8.04 -51.93 -0.42 0.29 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.53 7.75 -51.93 -0.40 0.12 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.43 8.06 -51.92 -0.42 0.01 16 40 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16 41 H 0.42 6.43 0.85 -58.26 -0.05 6.38 16 42 H 0.08 1.67 6.89 -51.93 -0.36 1.31 16 43 H 0.08 2.06 8.05 -51.93 -0.42 1.64 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.08 1.22 5.35 -51.93 -0.28 0.94 16 47 H 0.08 1.14 5.31 -51.93 -0.28 0.87 16 48 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.25 6.90 8.31 -40.82 -0.34 6.57 16 52 H 0.19 1.98 7.50 -52.49 -0.39 1.58 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -31.30 397.53 -9.40 -40.70 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -8.38 Total: 9.21 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.27 Total: -2.80 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.20 Total: -58.28 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.30 -9.40 -40.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021424041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.562 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds