Wall clock time and date at job start Wed Apr 1 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47127 * 2 1 4 4 C 1.52998 * 109.47405 * 120.00405 * 2 1 3 5 5 N 1.46495 * 109.47059 * 174.99970 * 4 2 1 6 6 C 1.35031 * 124.88599 * 124.97470 * 5 4 2 7 7 C 1.35368 * 107.22999 * 179.72267 * 6 5 4 8 8 C 1.41494 * 105.50186 * 0.41686 * 7 6 5 9 9 C 1.47711 * 126.51967 * 179.84278 * 8 7 6 10 10 O 1.21572 * 119.99818 * 359.71516 * 9 8 7 11 11 N 1.34774 * 120.00360 * 179.70971 * 9 8 7 12 12 C 1.49626 * 126.06906 * 0.02562 * 11 9 8 13 13 C 1.51527 * 102.49314 * 154.35130 * 12 11 9 14 14 H 1.09002 * 111.12269 * 288.14569 * 13 12 11 15 15 C 1.51558 * 123.79937 * 151.79878 * 13 12 11 16 16 C 1.55461 * 102.21758 * 208.28732 * 15 13 12 17 17 C 1.56002 * 105.84520 * 24.94240 * 16 15 13 18 18 H 1.09002 * 110.52604 * 248.66707 * 17 16 15 19 19 N 1.46501 * 110.64509 * 125.97456 * 17 16 15 20 20 C 1.36937 * 120.00023 * 88.42437 * 19 17 16 21 21 H 1.08004 * 120.00198 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00336 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00367 * 180.02562 * 22 20 19 24 24 Si 1.86807 * 119.99749 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46742 * 90.00238 * 24 22 20 26 26 H 1.48496 * 109.47219 * 210.00109 * 24 22 20 27 27 H 1.48495 * 109.47062 * 330.00409 * 24 22 20 28 28 C 1.49704 * 103.98635 * 7.29040 * 17 16 15 29 29 H 1.09002 * 108.54710 * 77.98059 * 28 17 16 30 30 C 1.48091 * 126.29024 * 179.05678 * 11 9 8 31 31 N 1.28469 * 124.88466 * 304.97110 * 5 4 2 32 32 H 1.09010 * 109.47035 * 299.99239 * 1 2 3 33 33 H 1.09001 * 109.47732 * 59.99331 * 1 2 3 34 34 H 1.09008 * 109.47318 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.46925 * 240.00238 * 2 1 3 36 36 H 1.09000 * 109.47228 * 180.02562 * 3 2 1 37 37 H 1.09006 * 109.47779 * 300.00674 * 3 2 1 38 38 H 1.09008 * 109.47064 * 60.00490 * 3 2 1 39 39 H 1.08996 * 109.47052 * 54.99783 * 4 2 1 40 40 H 1.09005 * 109.46886 * 294.99821 * 4 2 1 41 41 H 1.08003 * 126.38376 * 359.97438 * 6 5 4 42 42 H 1.07998 * 127.24931 * 180.25970 * 7 6 5 43 43 H 1.09004 * 110.80332 * 36.10240 * 12 11 9 44 44 H 1.09002 * 110.80762 * 272.60067 * 12 11 9 45 45 H 1.09000 * 110.96359 * 325.94497 * 15 13 12 46 46 H 1.09000 * 110.96130 * 89.69232 * 15 13 12 47 47 H 1.09005 * 109.87878 * 265.98863 * 16 15 13 48 48 H 1.09005 * 110.43081 * 144.19040 * 16 15 13 49 49 H 0.97000 * 120.00248 * 268.42380 * 19 17 16 50 50 H 0.97001 * 120.00158 * 180.02562 * 23 22 20 51 51 H 1.09007 * 109.83725 * 54.29521 * 30 11 9 52 52 H 1.08995 * 110.37653 * 292.28249 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1904 6 6 4.3451 -0.3870 2.1475 7 6 5.6024 -0.6685 1.7324 8 6 5.4535 -1.2908 0.4703 9 6 6.5400 -1.7858 -0.3993 10 8 7.6987 -1.6700 -0.0500 11 7 6.2469 -2.3660 -1.5799 12 6 4.8762 -2.5773 -2.1414 13 6 5.1370 -2.6255 -3.6333 14 1 5.3880 -1.6379 -4.0203 15 6 4.2757 -3.3943 -4.6153 16 6 5.2897 -3.7395 -5.7421 17 6 6.6957 -3.7336 -5.0663 18 1 7.2893 -2.8933 -5.4264 19 7 7.3935 -4.9976 -5.3146 20 6 8.1667 -5.1442 -6.4353 21 1 8.2625 -4.3278 -7.1359 22 6 8.8274 -6.3420 -6.6709 23 7 9.5710 -6.4827 -7.7478 24 14 8.6624 -7.7538 -5.4588 25 1 7.5061 -8.6030 -5.8426 26 1 9.9031 -8.5695 -5.4771 27 1 8.4466 -7.2113 -4.0935 28 6 6.3956 -3.5774 -3.6080 29 1 6.0723 -4.5415 -3.2154 30 6 7.2208 -2.8910 -2.5643 31 7 4.1606 -1.3499 0.2208 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 1.6767 1.9563 0.8901 39 1 1.6054 -1.7198 1.2950 40 1 1.7517 -0.1584 2.1369 41 1 4.0691 0.0951 3.0737 42 1 6.5250 -0.4596 2.2534 43 1 4.2218 -1.7427 -1.8896 44 1 4.4554 -3.5199 -1.7914 45 1 3.8871 -4.3064 -4.1623 46 1 3.4645 -2.7719 -4.9929 47 1 5.2455 -2.9825 -6.5252 48 1 5.0761 -4.7244 -6.1576 49 1 7.3078 -5.7307 -4.6853 50 1 10.0324 -7.3198 -7.9126 51 1 7.8893 -3.6028 -2.0798 52 1 7.7907 -2.0742 -3.0071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026276867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:53 Heat of formation + Delta-G solvation = 74.945353 kcal Electronic energy + Delta-G solvation = -31070.243958 eV Core-core repulsion = 27072.365714 eV Total energy + Delta-G solvation = -3997.878244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = -0.34 seconds Orbital eigenvalues (eV) -42.91701 -40.49138 -38.48153 -36.96340 -35.42246 -33.44001 -32.52968 -31.13962 -31.08178 -29.65194 -28.65986 -27.74685 -27.18795 -25.61514 -24.00141 -22.70809 -22.08874 -21.68116 -20.59883 -20.25178 -19.36593 -19.06537 -17.72296 -17.49967 -16.62601 -16.57058 -16.27411 -15.51668 -15.12850 -14.89436 -14.63778 -14.26166 -14.23066 -13.94473 -13.74678 -13.48907 -13.45819 -13.37044 -12.86388 -12.80467 -12.63057 -12.52211 -12.43364 -11.91609 -11.89556 -11.75598 -11.58811 -11.53076 -11.38645 -11.13076 -10.85582 -10.84162 -10.78935 -10.44345 -10.35052 -9.99450 -9.96322 -9.72598 -9.53416 -9.46654 -9.26805 -8.90683 -8.54619 -7.25362 -5.74795 -3.10498 1.46033 1.94462 2.12800 2.95232 3.40020 3.42562 3.43480 3.48070 3.85054 4.10971 4.16868 4.35055 4.39176 4.54756 4.61363 4.61941 4.81887 4.86988 4.92716 5.04075 5.07842 5.12564 5.28562 5.29670 5.32219 5.37301 5.43855 5.52377 5.54442 5.54935 5.56864 5.62113 5.69594 5.73028 5.74214 5.80792 5.87674 5.99292 6.02633 6.11281 6.13866 6.25221 6.26293 6.39938 6.42394 6.55242 6.59714 6.74880 6.98106 7.52406 7.68561 8.01625 8.23139 8.44480 9.22460 9.95120 10.14545 11.43501 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016050 B = 0.002545 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.174685 B =11000.792305 C =12015.735431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.124 3.876 5 N -0.281 5.281 6 C -0.021 4.021 7 C -0.179 4.179 8 C -0.009 4.009 9 C 0.615 3.385 10 O -0.537 6.537 11 N -0.611 5.611 12 C 0.124 3.876 13 C -0.127 4.127 14 H 0.086 0.914 15 C -0.099 4.099 16 C -0.142 4.142 17 C 0.205 3.795 18 H 0.063 0.937 19 N -0.745 5.745 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.934 5.934 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.124 4.124 29 H 0.073 0.927 30 C 0.133 3.867 31 N -0.253 5.253 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.179 0.821 42 H 0.161 0.839 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.074 0.926 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.017 15.778 20.877 34.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.004 3.996 5 N -0.069 5.069 6 C -0.163 4.163 7 C -0.207 4.207 8 C -0.169 4.169 9 C 0.401 3.599 10 O -0.412 6.412 11 N -0.345 5.345 12 C 0.002 3.998 13 C -0.147 4.147 14 H 0.105 0.895 15 C -0.137 4.137 16 C -0.183 4.183 17 C 0.094 3.906 18 H 0.081 0.919 19 N -0.386 5.386 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.191 4.191 23 N -0.581 5.581 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.144 4.144 29 H 0.091 0.909 30 C 0.011 3.989 31 N -0.089 5.089 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.196 0.804 42 H 0.178 0.822 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.092 0.908 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.101 15.536 20.157 33.707 hybrid contribution 0.453 -0.873 1.493 1.788 sum -21.648 14.663 21.651 33.947 Atomic orbital electron populations 1.21787 0.93516 1.02436 1.02616 1.21448 0.96575 0.97002 0.97927 1.21848 1.01413 0.95149 1.02217 1.22176 0.73676 1.03033 1.00739 1.45605 1.07620 1.40897 1.12787 1.22830 0.89861 1.06231 0.97412 1.21760 0.97996 1.04904 0.96089 1.21879 0.90398 1.07263 0.97377 1.16515 0.86529 0.77455 0.79353 1.90805 1.19574 1.57817 1.73024 1.49335 1.08811 1.58437 1.17870 1.21861 0.83523 1.02269 0.92169 1.22625 0.98192 0.99924 0.93977 0.89517 1.21694 0.97168 0.98848 0.95981 1.23583 0.95581 1.02102 0.97030 1.19901 0.91659 0.90083 0.88921 0.91859 1.42863 1.57414 1.11727 1.26638 1.19080 1.20266 0.99690 0.98215 0.89128 1.24666 0.99434 0.97633 0.97345 1.69698 1.35269 1.26036 1.27139 0.86576 0.77231 0.83421 0.81483 1.21160 1.21772 1.20273 1.22110 0.96385 0.98911 0.97024 0.90860 1.20783 0.90990 0.98258 0.88825 1.73584 1.05304 1.16663 1.13383 0.92364 0.91618 0.92082 0.89147 0.92635 0.91956 0.92568 0.88843 0.88000 0.80367 0.82161 0.89042 0.91325 0.91751 0.92019 0.92281 0.90693 0.80567 0.93084 0.90808 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.48 9.19 37.16 0.34 -0.14 16 2 C -0.11 -0.54 2.95 -90.63 -0.27 -0.81 16 3 C -0.15 -0.81 9.08 37.15 0.34 -0.47 16 4 C 0.12 0.57 5.79 -4.05 -0.02 0.54 16 5 N -0.28 -2.29 2.86 -61.33 -0.18 -2.46 16 6 C -0.02 -0.16 11.40 -17.17 -0.20 -0.36 16 7 C -0.18 -1.96 10.81 -39.37 -0.43 -2.38 16 8 C -0.01 -0.12 6.98 -82.77 -0.58 -0.70 16 9 C 0.61 9.97 7.88 -12.39 -0.10 9.87 16 10 O -0.54 -10.35 17.29 5.30 0.09 -10.25 16 11 N -0.61 -9.23 3.40 -173.74 -0.59 -9.82 16 12 C 0.12 1.55 5.97 -3.05 -0.02 1.53 16 13 C -0.13 -1.64 3.11 -89.45 -0.28 -1.92 16 14 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 15 C -0.10 -1.24 6.58 -26.15 -0.17 -1.41 16 16 C -0.14 -2.29 6.71 -23.82 -0.16 -2.45 16 17 C 0.20 3.81 3.43 -67.96 -0.23 3.58 16 18 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 19 N -0.74 -17.32 4.92 -53.45 -0.26 -17.58 16 20 C -0.24 -6.77 10.45 -15.06 -0.16 -6.93 16 21 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 22 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 23 N -0.93 -29.40 13.97 55.49 0.78 -28.63 16 24 Si 0.88 22.30 27.74 -169.99 -4.71 17.58 16 25 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 27 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 28 C -0.12 -1.97 2.24 -91.23 -0.20 -2.18 16 29 H 0.07 1.20 7.77 -51.93 -0.40 0.80 16 30 C 0.13 2.16 6.71 -4.79 -0.03 2.12 16 31 N -0.25 -2.83 8.73 33.42 0.29 -2.54 16 32 H 0.06 0.14 8.14 -51.92 -0.42 -0.29 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.18 8.14 -51.92 -0.42 -0.24 16 35 H 0.09 0.61 7.96 -51.93 -0.41 0.20 16 36 H 0.05 0.42 7.75 -51.93 -0.40 0.02 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.23 8.14 -51.92 -0.42 -0.19 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.21 8.04 -51.93 -0.42 -0.21 16 41 H 0.18 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.09 1.07 6.25 -51.93 -0.32 0.75 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.07 1.35 7.99 -51.93 -0.41 0.93 16 49 H 0.36 8.36 5.51 -40.82 -0.22 8.14 16 50 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 51 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 52 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 412.13 15.07 6.21 6.21 Total: -1.00 -34.59 412.13 -9.59 -44.18 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.95 Total: 5.36 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.26 Total: -2.05 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: 0.04 Total: -61.03 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.59 -9.59 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026276867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.124 kcal (2) G-P(sol) polarization free energy of solvation -34.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.34 seconds