Wall clock time and date at job start Wed Apr 1 2020 04:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47141 * 2 1 4 4 C 1.52996 * 109.47270 * 119.99824 * 2 1 3 5 5 N 1.46503 * 109.46780 * 174.99805 * 4 2 1 6 6 C 1.35036 * 124.88241 * 124.98191 * 5 4 2 7 7 C 1.35368 * 107.22948 * 179.72484 * 6 5 4 8 8 C 1.41497 * 105.49992 * 0.41231 * 7 6 5 9 9 C 1.47709 * 126.51827 * 179.84528 * 8 7 6 10 10 O 1.21580 * 119.99952 * 359.71144 * 9 8 7 11 11 N 1.34773 * 120.00621 * 179.71254 * 9 8 7 12 12 C 1.48347 * 128.19282 * 0.02562 * 11 9 8 13 13 C 1.54467 * 104.30422 * 138.25224 * 12 11 9 14 14 H 1.08994 * 111.92793 * 263.69411 * 13 12 11 15 15 C 1.54149 * 108.79868 * 138.54754 * 13 12 11 16 16 C 1.54835 * 104.34568 * 224.04058 * 15 13 12 17 17 C 1.54832 * 102.73262 * 38.22775 * 16 15 13 18 18 H 1.09004 * 110.56597 * 80.53917 * 17 16 15 19 19 N 1.46496 * 110.45847 * 203.05159 * 17 16 15 20 20 C 1.36933 * 120.00277 * 269.93043 * 19 17 16 21 21 H 1.08003 * 120.00222 * 359.97438 * 20 19 17 22 22 C 1.38818 * 120.00280 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99522 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00197 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47061 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47175 * 119.99923 * 24 22 20 27 27 H 1.48500 * 109.47527 * 240.00107 * 24 22 20 28 28 C 1.54143 * 104.34987 * 321.77119 * 17 16 15 29 29 H 1.08997 * 111.89580 * 261.14424 * 28 17 16 30 30 C 1.48339 * 128.20512 * 180.02562 * 11 9 8 31 31 N 1.28462 * 124.88792 * 304.97660 * 5 4 2 32 32 H 1.09000 * 109.46855 * 299.99646 * 1 2 3 33 33 H 1.08999 * 109.47215 * 59.99535 * 1 2 3 34 34 H 1.09003 * 109.47038 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46855 * 240.00354 * 2 1 3 36 36 H 1.08994 * 109.47729 * 180.02562 * 3 2 1 37 37 H 1.09011 * 109.47066 * 300.00400 * 3 2 1 38 38 H 1.09001 * 109.47246 * 59.99502 * 3 2 1 39 39 H 1.09003 * 109.46986 * 55.00719 * 4 2 1 40 40 H 1.08988 * 109.47519 * 294.99824 * 4 2 1 41 41 H 1.08004 * 126.38239 * 359.97438 * 6 5 4 42 42 H 1.08003 * 127.24548 * 180.25514 * 7 6 5 43 43 H 1.08998 * 110.46343 * 19.54743 * 12 11 9 44 44 H 1.09000 * 110.46276 * 256.95793 * 12 11 9 45 45 H 1.09000 * 110.45501 * 342.75267 * 15 13 12 46 46 H 1.08999 * 110.45599 * 105.32296 * 15 13 12 47 47 H 1.08997 * 110.75930 * 279.91754 * 16 15 13 48 48 H 1.09003 * 110.75895 * 156.54225 * 16 15 13 49 49 H 0.97004 * 120.00005 * 89.92855 * 19 17 16 50 50 H 0.97003 * 119.99905 * 179.97438 * 23 22 20 51 51 H 1.08999 * 110.46897 * 103.03676 * 30 11 9 52 52 H 1.09004 * 110.57166 * 340.50958 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.3452 -0.3869 2.1476 7 6 5.6025 -0.6683 1.7324 8 6 5.4536 -1.2907 0.4704 9 6 6.5401 -1.7857 -0.3992 10 8 7.6988 -1.6698 -0.0499 11 7 6.2470 -2.3659 -1.5798 12 6 4.9109 -2.5989 -2.1808 13 6 5.0962 -2.2437 -3.6726 14 1 4.7845 -1.2220 -3.8895 15 6 4.3498 -3.2865 -4.5279 16 6 5.3387 -3.6242 -5.6705 17 6 6.7081 -3.6228 -4.9481 18 1 6.8661 -4.5661 -4.4252 19 7 7.7913 -3.3812 -5.9044 20 6 8.3966 -4.4358 -6.5341 21 1 8.0758 -5.4458 -6.3255 22 6 9.4226 -4.2068 -7.4407 23 7 9.8133 -2.9760 -7.6953 24 14 10.2489 -5.6454 -8.2992 25 1 9.6300 -6.9158 -7.8429 26 1 10.0761 -5.5109 -9.7680 27 1 11.6968 -5.6533 -7.9698 28 6 6.6082 -2.4594 -3.9420 29 1 7.0893 -1.5558 -4.3164 30 6 7.1840 -2.9227 -2.5861 31 7 4.1606 -1.3498 0.2209 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9564 0.8899 39 1 1.6055 -1.7198 1.2951 40 1 1.7518 -0.1583 2.1369 41 1 4.0691 0.0952 3.0738 42 1 6.5251 -0.4593 2.2535 43 1 4.1680 -1.9458 -1.7229 44 1 4.6207 -3.6438 -2.0710 45 1 4.1308 -4.1766 -3.9382 46 1 3.4315 -2.8607 -4.9322 47 1 5.3099 -2.8581 -6.4454 48 1 5.1238 -4.6072 -6.0895 49 1 8.0797 -2.4742 -6.0916 50 1 10.5305 -2.8159 -8.3285 51 1 7.2000 -4.0111 -2.5309 52 1 8.1864 -2.5199 -2.4402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026276868.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:02 Heat of formation + Delta-G solvation = 56.654227 kcal Electronic energy + Delta-G solvation = -31045.725702 eV Core-core repulsion = 27047.054295 eV Total energy + Delta-G solvation = -3998.671406 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 9.35 seconds Orbital eigenvalues (eV) -42.87294 -40.00105 -38.20823 -36.91815 -35.06424 -33.28307 -32.46426 -31.03507 -30.88210 -29.36996 -28.26530 -27.70751 -27.14585 -25.01310 -24.22896 -22.88372 -22.22767 -21.64873 -20.59066 -20.10442 -19.09573 -18.93060 -17.55484 -17.06467 -16.73289 -16.55136 -15.74301 -15.50830 -15.31008 -14.96959 -14.33704 -14.18300 -13.99459 -13.90395 -13.77739 -13.46095 -13.28774 -13.04448 -12.95897 -12.82776 -12.53160 -12.46300 -12.22408 -11.81094 -11.70313 -11.57928 -11.54752 -11.32948 -11.12138 -10.96978 -10.76866 -10.73529 -10.53373 -10.27574 -10.14091 -10.12773 -9.85821 -9.83557 -9.61232 -9.43395 -9.22164 -8.84275 -8.50834 -6.90210 -5.72914 -3.01250 1.50525 1.99283 2.16758 3.11263 3.46261 3.49188 3.51907 3.54094 3.89384 4.20347 4.35901 4.42213 4.57935 4.60928 4.63961 4.79864 4.83073 4.91672 5.02253 5.06527 5.11537 5.14682 5.32251 5.36182 5.48024 5.50224 5.56223 5.56788 5.58688 5.62120 5.69558 5.73965 5.74852 5.79114 5.87163 5.97740 6.03238 6.04832 6.16244 6.22505 6.29613 6.35333 6.43603 6.49924 6.62421 6.62756 6.77377 6.85944 7.10197 7.65949 7.74673 7.78187 8.31770 8.45708 9.56845 10.15132 10.49176 11.49797 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017309 B = 0.002410 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.276386 B =11616.290512 C =12671.882325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.149 4.149 4 C 0.124 3.876 5 N -0.282 5.282 6 C -0.021 4.021 7 C -0.180 4.180 8 C -0.007 4.007 9 C 0.619 3.381 10 O -0.538 6.538 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.115 4.115 16 C -0.142 4.142 17 C 0.184 3.816 18 H 0.057 0.943 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.108 4.108 29 H 0.088 0.912 30 C 0.116 3.884 31 N -0.255 5.255 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.179 0.821 42 H 0.161 0.839 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.076 0.924 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.505 7.359 20.945 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.004 3.996 5 N -0.069 5.069 6 C -0.163 4.163 7 C -0.208 4.208 8 C -0.167 4.167 9 C 0.405 3.595 10 O -0.414 6.414 11 N -0.343 5.343 12 C -0.022 4.022 13 C -0.121 4.121 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.183 4.183 17 C 0.073 3.927 18 H 0.075 0.925 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.128 4.128 29 H 0.106 0.894 30 C -0.006 4.006 31 N -0.091 5.091 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.196 0.804 42 H 0.178 0.822 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.077 0.923 49 H 0.218 0.782 50 H 0.064 0.936 51 H 0.094 0.906 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.656 6.940 20.412 31.275 hybrid contribution 1.065 -0.133 0.031 1.074 sum -21.591 6.807 20.443 30.503 Atomic orbital electron populations 1.21784 0.93536 1.02401 1.02613 1.21452 0.96555 0.97041 0.97930 1.21848 1.01461 0.95125 1.02206 1.22171 0.73713 1.02992 1.00732 1.45618 1.07601 1.40934 1.12791 1.22826 0.89874 1.06235 0.97402 1.21766 0.97989 1.04902 0.96110 1.21925 0.90359 1.07113 0.97313 1.16480 0.86472 0.77277 0.79226 1.90806 1.19573 1.58065 1.72913 1.48996 1.09962 1.57577 1.17813 1.22965 0.85129 1.01467 0.92676 1.22731 0.95967 0.99599 0.93824 0.90005 1.22377 0.97917 0.97553 0.97456 1.23213 0.96714 1.01092 0.97244 1.21143 0.88040 0.94385 0.89166 0.92507 1.42463 1.38609 1.06959 1.48020 1.19285 1.12223 0.87941 1.17377 0.91150 1.24741 0.99539 0.96290 1.00439 1.69672 1.31723 1.18062 1.38607 0.86143 0.79286 0.81679 0.79246 1.20585 1.21968 1.21908 1.23067 0.94274 1.00572 0.94874 0.89367 1.22619 0.94130 0.98209 0.85597 1.73490 1.05354 1.16897 1.13335 0.92370 0.91626 0.92102 0.89143 0.92601 0.91945 0.92584 0.88867 0.88019 0.80377 0.82151 0.88346 0.91203 0.91807 0.92380 0.91623 0.92286 0.78187 0.93594 0.90576 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.52 9.19 37.16 0.34 -0.18 16 2 C -0.11 -0.58 2.95 -90.62 -0.27 -0.85 16 3 C -0.15 -0.89 9.08 37.16 0.34 -0.55 16 4 C 0.12 0.60 5.79 -4.04 -0.02 0.58 16 5 N -0.28 -2.39 2.86 -61.33 -0.18 -2.57 16 6 C -0.02 -0.17 11.40 -17.17 -0.20 -0.36 16 7 C -0.18 -2.04 10.81 -39.36 -0.43 -2.46 16 8 C -0.01 -0.10 7.01 -82.77 -0.58 -0.68 16 9 C 0.62 10.44 7.93 -12.39 -0.10 10.34 16 10 O -0.54 -10.77 17.21 5.30 0.09 -10.67 16 11 N -0.61 -9.63 3.31 -170.07 -0.56 -10.20 16 12 C 0.10 1.32 6.26 -2.25 -0.01 1.30 16 13 C -0.10 -1.40 3.95 -88.15 -0.35 -1.75 16 14 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 15 C -0.11 -1.52 6.36 -25.16 -0.16 -1.68 16 16 C -0.14 -2.43 6.57 -24.80 -0.16 -2.59 16 17 C 0.18 3.57 3.06 -66.37 -0.20 3.36 16 18 H 0.06 1.13 7.13 -51.93 -0.37 0.76 16 19 N -0.72 -17.90 5.20 -51.91 -0.27 -18.17 16 20 C -0.24 -6.55 9.96 -15.06 -0.15 -6.70 16 21 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 24 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 28 C -0.11 -1.82 3.65 -88.17 -0.32 -2.14 16 29 H 0.09 1.63 7.80 -51.93 -0.40 1.23 16 30 C 0.12 1.97 6.58 -2.28 -0.02 1.96 16 31 N -0.25 -2.96 8.66 33.42 0.29 -2.67 16 32 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.09 0.66 7.96 -51.93 -0.41 0.24 16 36 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 37 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 38 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.23 8.04 -51.94 -0.42 -0.19 16 41 H 0.18 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.10 1.21 5.48 -51.93 -0.28 0.93 16 44 H 0.07 0.87 7.20 -51.93 -0.37 0.49 16 45 H 0.06 0.78 7.18 -51.93 -0.37 0.40 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 49 H 0.38 10.23 7.60 -40.82 -0.31 9.92 16 50 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.08 1.26 7.20 -51.93 -0.37 0.89 16 52 H 0.08 1.56 7.88 -51.93 -0.41 1.15 16 LS Contribution 412.12 15.07 6.21 6.21 Total: -1.00 -33.95 412.12 -9.85 -43.80 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.75 Total: 7.26 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.38 Total: -2.91 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.01 Total: -61.27 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.95 -9.85 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026276868.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.458 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.35 seconds