Wall clock time and date at job start Wed Apr 1 2020 04:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 N 1.46494 * 109.47345 * 184.99932 * 4 2 1 6 6 C 1.35037 * 124.88759 * 124.99905 * 5 4 2 7 7 C 1.35361 * 107.22916 * 179.97438 * 6 5 4 8 8 C 1.41507 * 105.50288 * 0.02562 * 7 6 5 9 9 C 1.47716 * 126.51398 * 180.02562 * 8 7 6 10 10 O 1.21566 * 120.00078 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99659 * 179.97438 * 9 8 7 12 12 C 1.49222 * 126.05876 * 0.02825 * 11 9 8 13 13 C 1.50350 * 104.85957 * 172.89911 * 12 11 9 14 14 H 1.08999 * 110.06032 * 278.93049 * 13 12 11 15 15 C 1.51008 * 125.53866 * 143.74812 * 13 12 11 16 16 C 1.55930 * 101.81519 * 203.83097 * 15 13 12 17 17 C 1.55946 * 105.58319 * 25.61495 * 16 15 13 18 18 H 1.09008 * 110.60496 * 125.91075 * 17 16 15 19 19 N 1.46503 * 110.49369 * 248.51371 * 17 16 15 20 20 C 1.36933 * 119.99840 * 269.73954 * 19 17 16 21 21 H 1.07996 * 120.00369 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99385 * 180.02562 * 20 19 17 23 23 N 1.31625 * 119.99498 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00390 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46785 * 90.00302 * 24 22 20 26 26 H 1.48500 * 109.46984 * 210.00180 * 24 22 20 27 27 H 1.48494 * 109.46957 * 330.00496 * 24 22 20 28 28 C 1.50285 * 104.15834 * 7.18459 * 17 16 15 29 29 H 1.08998 * 109.48249 * 80.27079 * 28 17 16 30 30 C 1.49697 * 126.05886 * 179.71402 * 11 9 8 31 31 N 1.28471 * 124.88439 * 304.69362 * 5 4 2 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 34 34 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 35 35 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 38 38 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 39 39 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 40 40 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 41 41 H 1.07999 * 126.38207 * 359.97438 * 6 5 4 42 42 H 1.07998 * 127.24926 * 179.97438 * 7 6 5 43 43 H 1.09004 * 110.35662 * 291.74463 * 12 11 9 44 44 H 1.08994 * 110.36186 * 53.94253 * 12 11 9 45 45 H 1.09007 * 110.99926 * 322.07705 * 15 13 12 46 46 H 1.08991 * 111.00515 * 85.91998 * 15 13 12 47 47 H 1.09000 * 110.58479 * 266.44438 * 16 15 13 48 48 H 1.09005 * 109.98297 * 144.47043 * 16 15 13 49 49 H 0.96998 * 119.99492 * 89.73490 * 19 17 16 50 50 H 0.97000 * 119.99491 * 179.97438 * 23 22 20 51 51 H 1.08998 * 110.84437 * 273.09004 * 30 11 9 52 52 H 1.08996 * 110.84764 * 36.70625 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1960 -1.9793 -1.2899 7 6 5.5088 -1.6649 -1.1906 8 6 5.5500 -0.2600 -1.0263 9 6 6.7609 0.5719 -0.8727 10 8 7.8601 0.0525 -0.8800 11 7 6.6472 1.9066 -0.7244 12 6 5.3723 2.6816 -0.6955 13 6 5.7810 4.0826 -0.3338 14 1 5.9227 4.1643 0.7438 15 6 5.1525 5.3464 -0.8706 16 6 6.3046 6.3804 -0.6832 17 6 7.6224 5.5469 -0.7002 18 1 8.3135 5.9371 -1.4474 19 7 8.2474 5.5483 0.6249 20 6 9.1554 6.5195 0.9525 21 1 9.4113 7.2841 0.2340 22 6 9.7479 6.5205 2.2078 23 7 10.6212 7.4537 2.5226 24 14 9.3060 5.1975 3.4504 25 1 10.2252 4.0421 3.2912 26 1 9.4339 5.7463 4.8243 27 1 7.9076 4.7525 3.2233 28 6 7.1757 4.1603 -1.0697 29 1 7.0301 4.1007 -2.1483 30 6 7.7770 2.8736 -0.5530 31 7 4.3028 0.1658 -1.0430 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.1299 1.4426 -0.0005 38 1 1.6766 1.9563 -0.8900 39 1 1.6054 -1.7198 -1.2952 40 1 1.7516 -0.1583 -2.1370 41 1 3.7822 -2.9678 -1.4235 42 1 6.3481 -2.3435 -1.2280 43 1 4.8970 2.6664 -1.6762 44 1 4.6983 2.2749 0.0583 45 1 4.8925 5.2367 -1.9235 46 1 4.2800 5.6294 -0.2819 47 1 6.2011 6.9011 0.2688 48 1 6.3010 7.0953 -1.5061 49 1 8.0178 4.8614 1.2701 50 1 11.0349 7.4546 3.4000 51 1 8.0523 2.9661 0.4976 52 1 8.6356 2.5777 -1.1556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026276869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:16 Heat of formation + Delta-G solvation = 80.406505 kcal Electronic energy + Delta-G solvation = -31722.837420 eV Core-core repulsion = 27725.195990 eV Total energy + Delta-G solvation = -3997.641430 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -42.89664 -40.44753 -38.45664 -36.87541 -35.28047 -33.35699 -32.50198 -31.10194 -31.04350 -29.53216 -28.79754 -27.50768 -27.12159 -25.65336 -23.88455 -22.85635 -22.05948 -21.72700 -20.70782 -19.94270 -19.29192 -18.95343 -17.79900 -17.65588 -16.71874 -16.33805 -16.02001 -15.37115 -15.10982 -14.77192 -14.50651 -14.30678 -14.15557 -13.94339 -13.83418 -13.76707 -13.42955 -13.12587 -12.81467 -12.68372 -12.58110 -12.48993 -12.36183 -12.01310 -11.86981 -11.78878 -11.45778 -11.28720 -11.25997 -11.00750 -10.87724 -10.70699 -10.58643 -10.40207 -10.32832 -10.08775 -9.95754 -9.62137 -9.53055 -9.41691 -9.23912 -8.91219 -8.50015 -7.25298 -5.75202 -3.10574 1.49429 1.97777 2.15755 2.98049 3.39288 3.42948 3.46736 3.48484 3.92242 4.14640 4.16483 4.41635 4.46454 4.59054 4.61063 4.73747 4.82759 4.93446 4.98911 5.09622 5.18320 5.25738 5.26480 5.39886 5.43502 5.47121 5.51959 5.54606 5.56199 5.58162 5.62442 5.65075 5.67467 5.78805 5.79119 5.87915 5.98492 6.06376 6.12663 6.19558 6.22688 6.33118 6.36345 6.42713 6.44421 6.56777 6.59605 6.74889 6.98169 7.57393 7.71895 8.01659 8.27058 8.44270 9.22195 9.94931 10.14269 11.43203 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003026 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.233660 B = 9250.505697 C = 9945.441243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.167 4.167 4 C 0.124 3.876 5 N -0.283 5.283 6 C -0.022 4.022 7 C -0.179 4.179 8 C -0.012 4.012 9 C 0.614 3.386 10 O -0.537 6.537 11 N -0.614 5.614 12 C 0.132 3.868 13 C -0.132 4.132 14 H 0.083 0.917 15 C -0.094 4.094 16 C -0.144 4.144 17 C 0.200 3.800 18 H 0.066 0.934 19 N -0.743 5.743 20 C -0.242 4.242 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.933 5.933 24 Si 0.878 3.122 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.125 4.125 29 H 0.081 0.919 30 C 0.131 3.869 31 N -0.249 5.249 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.180 0.820 42 H 0.161 0.839 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.076 0.924 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.882 -18.060 -9.797 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.224 4.224 4 C 0.003 3.997 5 N -0.071 5.071 6 C -0.165 4.165 7 C -0.207 4.207 8 C -0.172 4.172 9 C 0.401 3.599 10 O -0.413 6.413 11 N -0.348 5.348 12 C 0.010 3.990 13 C -0.151 4.151 14 H 0.102 0.898 15 C -0.132 4.132 16 C -0.185 4.185 17 C 0.089 3.911 18 H 0.084 0.916 19 N -0.385 5.385 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.709 3.291 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.145 4.145 29 H 0.099 0.901 30 C 0.011 3.989 31 N -0.085 5.085 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.197 0.803 42 H 0.178 0.822 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.869 -17.264 -9.742 31.027 hybrid contribution 0.013 -1.723 1.013 1.999 sum -23.856 -18.987 -8.729 31.714 Atomic orbital electron populations 1.21791 0.93654 1.02024 1.02855 1.21402 0.96389 0.98137 0.96725 1.22235 1.04482 0.93908 1.01739 1.22197 0.73376 1.03293 1.00792 1.45617 1.07375 1.03867 1.50237 1.22838 0.92154 0.92673 1.08787 1.21765 0.96581 0.94533 1.07804 1.21969 0.91149 0.93905 1.10174 1.16520 0.86514 0.80061 0.76818 1.90802 1.26371 1.72044 1.52045 1.49678 1.08956 1.05283 1.70866 1.21336 0.85382 0.90426 1.01809 1.22303 0.97898 0.93343 1.01541 0.89841 1.21629 0.98009 0.93651 0.99956 1.23734 0.94877 0.97670 1.02225 1.20131 0.92425 0.89974 0.88579 0.91626 1.42809 1.50437 1.33419 1.11876 1.19085 1.14312 1.04868 0.98919 0.89060 1.24648 0.98888 0.98031 0.97369 1.69698 1.31807 1.34953 1.21668 0.86652 0.78088 0.82468 0.81935 1.20884 1.21736 1.20469 1.22576 0.96553 0.95234 1.00098 0.90086 1.21502 0.88771 0.86714 1.01935 1.73569 1.00377 1.16056 1.18490 0.92479 0.91670 0.92109 0.90592 0.92668 0.89075 0.92560 0.88014 0.88842 0.80328 0.82163 0.91247 0.90542 0.91853 0.92078 0.90438 0.92433 0.80592 0.93083 0.90556 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 2 C -0.11 -0.62 3.11 -90.62 -0.28 -0.91 16 3 C -0.17 -1.29 8.88 37.16 0.33 -0.96 16 4 C 0.12 0.64 5.88 -4.04 -0.02 0.61 16 5 N -0.28 -2.48 3.40 -61.33 -0.21 -2.69 16 6 C -0.02 -0.18 11.40 -17.17 -0.20 -0.38 16 7 C -0.18 -2.05 10.81 -39.36 -0.43 -2.47 16 8 C -0.01 -0.17 6.99 -82.76 -0.58 -0.75 16 9 C 0.61 10.37 7.88 -12.39 -0.10 10.28 16 10 O -0.54 -10.69 17.26 5.31 0.09 -10.60 16 11 N -0.61 -9.73 3.42 -172.59 -0.59 -10.32 16 12 C 0.13 1.75 5.38 -3.85 -0.02 1.73 16 13 C -0.13 -1.87 2.75 -90.26 -0.25 -2.11 16 14 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16 15 C -0.09 -1.21 6.66 -26.17 -0.17 -1.38 16 16 C -0.14 -2.30 6.73 -23.59 -0.16 -2.46 16 17 C 0.20 3.66 3.46 -67.71 -0.23 3.42 16 18 H 0.07 1.25 8.09 -51.92 -0.42 0.83 16 19 N -0.74 -16.98 4.61 -53.21 -0.25 -17.22 16 20 C -0.24 -6.68 10.44 -15.06 -0.16 -6.84 16 21 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 24 Si 0.88 22.37 27.74 -169.99 -4.71 17.66 16 25 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 28 C -0.12 -1.96 2.60 -90.23 -0.23 -2.19 16 29 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 30 C 0.13 2.25 6.52 -3.20 -0.02 2.23 16 31 N -0.25 -2.90 6.89 33.42 0.23 -2.67 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.91 3.28 -51.93 -0.17 0.74 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.24 8.04 -51.92 -0.42 -0.18 16 40 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 44 H 0.08 0.98 5.41 -51.93 -0.28 0.70 16 45 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 1.41 7.98 -51.93 -0.41 1.00 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.36 8.27 4.05 -40.82 -0.17 8.11 16 50 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 51 H 0.08 1.44 6.97 -51.93 -0.36 1.08 16 52 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -34.19 401.89 -9.44 -43.63 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -8.55 Total: 7.02 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.28 Total: -2.33 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.04 Total: -61.43 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.19 -9.44 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026276869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.035 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds