Wall clock time and date at job start Wed Apr 1 2020 04:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 N 1.46494 * 109.47345 * 184.99932 * 4 2 1 6 6 C 1.35037 * 124.88759 * 124.99905 * 5 4 2 7 7 C 1.35361 * 107.22916 * 179.97438 * 6 5 4 8 8 C 1.41507 * 105.50288 * 0.02562 * 7 6 5 9 9 C 1.47716 * 126.51398 * 180.02562 * 8 7 6 10 10 O 1.21566 * 120.00078 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99659 * 179.97438 * 9 8 7 12 12 C 1.49222 * 126.05876 * 0.02825 * 11 9 8 13 13 C 1.50350 * 104.85957 * 172.89911 * 12 11 9 14 14 H 1.08999 * 110.06032 * 278.93049 * 13 12 11 15 15 C 1.51008 * 125.53866 * 143.74812 * 13 12 11 16 16 C 1.55930 * 101.81519 * 203.83097 * 15 13 12 17 17 C 1.55946 * 105.58319 * 25.61495 * 16 15 13 18 18 H 1.09008 * 110.60496 * 125.91075 * 17 16 15 19 19 N 1.46503 * 110.49369 * 248.51371 * 17 16 15 20 20 C 1.36933 * 119.99840 * 269.73954 * 19 17 16 21 21 H 1.07996 * 120.00369 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99385 * 180.02562 * 20 19 17 23 23 N 1.31625 * 119.99498 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00390 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46785 * 90.00302 * 24 22 20 26 26 H 1.48500 * 109.46984 * 210.00180 * 24 22 20 27 27 H 1.48494 * 109.46957 * 330.00496 * 24 22 20 28 28 C 1.50285 * 104.15834 * 7.18459 * 17 16 15 29 29 H 1.08998 * 109.48249 * 80.27079 * 28 17 16 30 30 C 1.49697 * 126.05886 * 179.71402 * 11 9 8 31 31 N 1.28471 * 124.88439 * 304.69362 * 5 4 2 32 32 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 34 34 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 35 35 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 38 38 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 39 39 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 40 40 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 41 41 H 1.07999 * 126.38207 * 359.97438 * 6 5 4 42 42 H 1.07998 * 127.24926 * 179.97438 * 7 6 5 43 43 H 1.09004 * 110.35662 * 291.74463 * 12 11 9 44 44 H 1.08994 * 110.36186 * 53.94253 * 12 11 9 45 45 H 1.09007 * 110.99926 * 322.07705 * 15 13 12 46 46 H 1.08991 * 111.00515 * 85.91998 * 15 13 12 47 47 H 1.09000 * 110.58479 * 266.44438 * 16 15 13 48 48 H 1.09005 * 109.98297 * 144.47043 * 16 15 13 49 49 H 0.96998 * 119.99492 * 89.73490 * 19 17 16 50 50 H 0.97000 * 119.99491 * 179.97438 * 23 22 20 51 51 H 1.08998 * 110.84437 * 273.09004 * 30 11 9 52 52 H 1.08996 * 110.84764 * 36.70625 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1960 -1.9793 -1.2899 7 6 5.5088 -1.6649 -1.1906 8 6 5.5500 -0.2600 -1.0263 9 6 6.7609 0.5719 -0.8727 10 8 7.8601 0.0525 -0.8800 11 7 6.6472 1.9066 -0.7244 12 6 5.3723 2.6816 -0.6955 13 6 5.7810 4.0826 -0.3338 14 1 5.9227 4.1643 0.7438 15 6 5.1525 5.3464 -0.8706 16 6 6.3046 6.3804 -0.6832 17 6 7.6224 5.5469 -0.7002 18 1 8.3135 5.9371 -1.4474 19 7 8.2474 5.5483 0.6249 20 6 9.1554 6.5195 0.9525 21 1 9.4113 7.2841 0.2340 22 6 9.7479 6.5205 2.2078 23 7 10.6212 7.4537 2.5226 24 14 9.3060 5.1975 3.4504 25 1 10.2252 4.0421 3.2912 26 1 9.4339 5.7463 4.8243 27 1 7.9076 4.7525 3.2233 28 6 7.1757 4.1603 -1.0697 29 1 7.0301 4.1007 -2.1483 30 6 7.7770 2.8736 -0.5530 31 7 4.3028 0.1658 -1.0430 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.1299 1.4426 -0.0005 38 1 1.6766 1.9563 -0.8900 39 1 1.6054 -1.7198 -1.2952 40 1 1.7516 -0.1583 -2.1370 41 1 3.7822 -2.9678 -1.4235 42 1 6.3481 -2.3435 -1.2280 43 1 4.8970 2.6664 -1.6762 44 1 4.6983 2.2749 0.0583 45 1 4.8925 5.2367 -1.9235 46 1 4.2800 5.6294 -0.2819 47 1 6.2011 6.9011 0.2688 48 1 6.3010 7.0953 -1.5061 49 1 8.0178 4.8614 1.2701 50 1 11.0349 7.4546 3.4000 51 1 8.0523 2.9661 0.4976 52 1 8.6356 2.5777 -1.1556 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026276869.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:11 Heat of formation + Delta-G solvation = 59.087360 kcal Electronic energy + Delta-G solvation = -31723.761887 eV Core-core repulsion = 27725.195990 eV Total energy + Delta-G solvation = -3998.565898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.30 seconds Orbital eigenvalues (eV) -43.66076 -41.73567 -39.76087 -37.36701 -36.80943 -35.12144 -33.24709 -33.01751 -31.84175 -30.77760 -30.19595 -28.00147 -27.82949 -27.03960 -24.98375 -24.78031 -23.11266 -22.42921 -21.31807 -21.00903 -20.57057 -20.32155 -19.69553 -18.49868 -17.71544 -17.40155 -17.12910 -16.65351 -16.27721 -16.01670 -15.75416 -15.47485 -15.41066 -14.98784 -14.85717 -14.64231 -14.61589 -14.18347 -14.04308 -13.81637 -13.57570 -13.50574 -13.34386 -13.14153 -13.00211 -12.89913 -12.74416 -12.53608 -12.25286 -12.21220 -11.96298 -11.93732 -11.84403 -11.71315 -11.65410 -11.46358 -11.32682 -11.23872 -10.99639 -10.89962 -10.19537 -10.05533 -9.73765 -9.28901 -8.02667 -5.33641 0.52789 1.21616 1.32042 1.36064 1.40693 1.48019 1.86268 2.32845 2.45257 2.90531 3.26148 3.29621 3.57805 3.68976 3.77833 3.80637 3.90673 3.96413 4.09415 4.15821 4.16627 4.26907 4.39252 4.41474 4.48417 4.55967 4.56743 4.63104 4.69840 4.70357 4.76060 4.78959 4.81194 4.84841 4.88860 4.96968 5.01392 5.05944 5.07023 5.15595 5.19261 5.25566 5.32599 5.36340 5.41485 5.42641 5.61056 5.63736 5.81186 5.96034 6.22911 6.37280 6.81883 7.08243 7.09071 7.85791 8.02906 9.19267 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.003026 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.233660 B = 9250.505697 C = 9945.441243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.169 4.169 4 C 0.116 3.884 5 N -0.273 5.273 6 C 0.003 3.997 7 C -0.206 4.206 8 C -0.048 4.048 9 C 0.607 3.393 10 O -0.582 6.582 11 N -0.614 5.614 12 C 0.143 3.857 13 C -0.118 4.118 14 H 0.060 0.940 15 C -0.079 4.079 16 C -0.138 4.138 17 C 0.188 3.812 18 H 0.055 0.945 19 N -0.746 5.746 20 C -0.218 4.218 21 H 0.064 0.936 22 C -0.060 4.060 23 N -0.983 5.983 24 Si 0.940 3.060 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.257 1.257 28 C -0.121 4.121 29 H 0.103 0.897 30 C 0.130 3.870 31 N -0.250 5.250 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.227 0.773 42 H 0.157 0.843 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.361 0.639 50 H 0.256 0.744 51 H 0.053 0.947 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.613 -20.445 -11.254 36.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.226 4.226 4 C -0.003 4.003 5 N -0.062 5.062 6 C -0.139 4.139 7 C -0.234 4.234 8 C -0.206 4.206 9 C 0.396 3.604 10 O -0.462 6.462 11 N -0.348 5.348 12 C 0.022 3.978 13 C -0.137 4.137 14 H 0.079 0.921 15 C -0.117 4.117 16 C -0.178 4.178 17 C 0.079 3.921 18 H 0.073 0.927 19 N -0.389 5.389 20 C -0.349 4.349 21 H 0.082 0.918 22 C -0.251 4.251 23 N -0.634 5.634 24 Si 0.768 3.232 25 H -0.213 1.213 26 H -0.220 1.220 27 H -0.182 1.182 28 C -0.141 4.141 29 H 0.122 0.878 30 C 0.008 3.992 31 N -0.087 5.087 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.244 0.756 42 H 0.175 0.825 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.195 0.805 50 H 0.065 0.935 51 H 0.071 0.929 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.681 -19.651 -11.240 36.539 hybrid contribution 1.405 -0.981 1.365 2.191 sum -27.277 -20.632 -9.875 35.598 Atomic orbital electron populations 1.21748 0.91993 1.03162 1.02902 1.21351 0.97637 0.96659 0.96643 1.22232 1.02987 0.95564 1.01831 1.22630 0.71027 1.05839 1.00757 1.46072 1.08544 1.03535 1.48073 1.23429 0.90726 0.94098 1.05667 1.21947 0.98396 0.93615 1.09416 1.21653 0.90935 0.94572 1.13448 1.17054 0.87180 0.80307 0.75872 1.90754 1.28339 1.72893 1.54175 1.49741 1.09341 1.05191 1.70481 1.21373 0.84250 0.89142 1.03017 1.22267 0.96846 0.94595 1.00015 0.92131 1.21580 0.96997 0.91071 1.02039 1.23550 0.94393 0.98281 1.01623 1.20426 0.93331 0.92349 0.85976 0.92681 1.42821 1.50064 1.32297 1.13737 1.19074 1.13704 1.04296 0.97859 0.91797 1.25330 0.99711 1.00503 0.99602 1.69855 1.33962 1.37440 1.22145 0.85639 0.78774 0.79537 0.79226 1.21308 1.22031 1.18219 1.22420 0.97290 0.92943 1.01424 0.87841 1.21349 0.89411 0.88150 1.00309 1.73527 0.99690 1.17124 1.18405 0.90812 0.92406 0.91332 0.91853 0.93252 0.91234 0.91862 0.84118 0.87565 0.75631 0.82537 0.89412 0.89860 0.88934 0.90245 0.92933 0.90719 0.80518 0.93488 0.92913 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.19 71.98 0.66 0.07 16 2 C -0.10 -0.85 3.11 -10.79 -0.03 -0.88 16 3 C -0.17 -2.19 8.88 71.98 0.64 -1.55 16 4 C 0.12 0.64 5.88 86.38 0.51 1.15 16 5 N -0.27 -3.79 3.40 -347.96 -1.18 -4.98 16 6 C 0.00 0.04 11.40 83.54 0.95 1.00 16 7 C -0.21 -4.45 10.81 22.41 0.24 -4.21 16 8 C -0.05 -1.32 6.99 42.46 0.30 -1.02 16 9 C 0.61 20.96 7.88 86.75 0.68 21.64 16 10 O -0.58 -24.35 17.26 -3.92 -0.07 -24.41 16 11 N -0.61 -19.49 3.42 -818.21 -2.80 -22.29 16 12 C 0.14 3.53 5.38 85.00 0.46 3.98 16 13 C -0.12 -3.12 2.75 -10.56 -0.03 -3.15 16 14 H 0.06 1.91 7.64 -2.39 -0.02 1.89 16 15 C -0.08 -1.76 6.66 30.96 0.21 -1.55 16 16 C -0.14 -4.18 6.73 32.63 0.22 -3.96 16 17 C 0.19 6.85 3.46 45.13 0.16 7.01 16 18 H 0.06 2.11 8.09 -2.38 -0.02 2.09 16 19 N -0.75 -34.66 4.61 -322.25 -1.49 -36.14 16 20 C -0.22 -12.41 10.44 84.03 0.88 -11.54 16 21 H 0.06 3.94 8.06 -2.91 -0.02 3.91 16 22 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 23 N -0.98 -64.01 13.97 21.65 0.30 -63.71 16 24 Si 0.94 47.55 27.74 68.60 1.90 49.45 16 25 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 26 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 27 H -0.26 -11.93 6.52 99.48 0.65 -11.28 16 28 C -0.12 -3.70 2.60 -10.54 -0.03 -3.73 16 29 H 0.10 2.76 8.13 -2.39 -0.02 2.75 16 30 C 0.13 4.54 6.52 85.15 0.56 5.10 16 31 N -0.25 -5.28 6.89 -48.17 -0.33 -5.61 16 32 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 1.24 3.28 -2.39 -0.01 1.23 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.14 -0.24 8.04 -2.38 -0.02 -0.26 16 40 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.23 0.55 8.06 -2.91 -0.02 0.52 16 42 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.09 1.89 8.09 -2.38 -0.02 1.88 16 44 H 0.08 2.01 5.41 -2.39 -0.01 1.99 16 45 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.87 7.98 -2.39 -0.02 1.85 16 48 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.36 16.72 4.05 -92.71 -0.38 16.35 16 50 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 51 H 0.05 2.08 6.97 -2.39 -0.02 2.06 16 52 H 0.07 2.58 8.09 -2.39 -0.02 2.56 16 Total: -1.00 -79.97 401.89 3.65 -76.32 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.48 Total: 26.17 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 6.83 Total: 5.21 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -5.50 Total: -132.74 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.07 Total: -24.41 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.90 Total: 49.45 kcal Total: -79.97 3.65 -76.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026276869.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.406 kcal (2) G-P(sol) polarization free energy of solvation -79.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.30 seconds