Wall clock time and date at job start Wed Apr 1 2020 04:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47294 * 2 1 4 4 C 1.52998 * 109.46767 * 119.99494 * 2 1 3 5 5 N 1.46504 * 109.47008 * 65.00016 * 4 2 1 6 6 C 1.35041 * 124.88493 * 124.99882 * 5 4 2 7 7 C 1.35355 * 107.22795 * 180.02562 * 6 5 4 8 8 C 1.41500 * 105.50878 * 359.97438 * 7 6 5 9 9 C 1.47710 * 126.52335 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99786 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99918 * 179.97438 * 9 8 7 12 12 C 1.46904 * 125.61925 * 0.03123 * 11 9 8 13 13 C 1.54207 * 107.63177 * 178.44286 * 12 11 9 14 14 H 1.09002 * 114.47666 * 214.84219 * 13 12 11 15 15 C 1.54843 * 108.04860 * 87.00245 * 13 12 11 16 16 C 1.54135 * 104.63218 * 214.54086 * 15 13 12 17 17 C 1.53865 * 106.49365 * 24.49984 * 16 15 13 18 18 H 1.09002 * 109.92224 * 238.95993 * 17 16 15 19 19 N 1.46504 * 110.08953 * 117.74103 * 17 16 15 20 20 C 1.36934 * 119.99617 * 86.92500 * 19 17 16 21 21 H 1.07998 * 120.00578 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99842 * 179.97438 * 20 19 17 23 23 N 1.31623 * 120.00130 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00331 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47412 * 89.99853 * 24 22 20 26 26 H 1.48500 * 109.47389 * 209.99986 * 24 22 20 27 27 H 1.48505 * 109.46995 * 329.99957 * 24 22 20 28 28 C 1.53710 * 107.03016 * 358.30531 * 17 16 15 29 29 H 1.09006 * 112.96749 * 214.88075 * 28 17 16 30 30 C 1.48442 * 125.24694 * 179.30501 * 11 9 8 31 31 N 1.28466 * 124.88390 * 305.33148 * 5 4 2 32 32 H 1.08997 * 109.47445 * 300.00613 * 1 2 3 33 33 H 1.09004 * 109.46401 * 60.00211 * 1 2 3 34 34 H 1.08996 * 109.47260 * 179.97438 * 1 2 3 35 35 H 1.08997 * 109.47445 * 239.99387 * 2 1 3 36 36 H 1.09003 * 109.47036 * 179.97438 * 3 2 1 37 37 H 1.08999 * 109.46557 * 299.99494 * 3 2 1 38 38 H 1.08999 * 109.47312 * 59.99883 * 3 2 1 39 39 H 1.09002 * 109.47563 * 305.00360 * 4 2 1 40 40 H 1.09003 * 109.47392 * 185.00086 * 4 2 1 41 41 H 1.08003 * 126.38178 * 0.02562 * 6 5 4 42 42 H 1.08008 * 127.24806 * 179.97438 * 7 6 5 43 43 H 1.08994 * 109.82353 * 58.91835 * 12 11 9 44 44 H 1.08997 * 109.82244 * 297.96905 * 12 11 9 45 45 H 1.08999 * 110.40501 * 333.33223 * 15 13 12 46 46 H 1.09005 * 110.40457 * 95.63761 * 15 13 12 47 47 H 1.08999 * 110.04889 * 265.23857 * 16 15 13 48 48 H 1.09001 * 110.04786 * 143.75887 * 16 15 13 49 49 H 0.97000 * 120.00040 * 266.92125 * 19 17 16 50 50 H 0.96999 * 119.99984 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.07109 * 85.00585 * 30 11 9 52 52 H 1.09006 * 111.04375 * 322.51736 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6523 -2.1328 1.1907 6 6 2.5073 -3.1733 1.2900 7 6 1.7735 -4.3062 1.1896 8 6 0.4352 -3.8768 1.0258 9 6 -0.7525 -4.7411 0.8703 10 8 -0.6291 -5.9506 0.8763 11 7 -1.9731 -4.1889 0.7228 12 6 -2.2634 -2.7491 0.6982 13 6 -3.7794 -2.5821 0.4706 14 1 -4.0529 -1.7163 -0.1325 15 6 -4.4796 -2.6263 1.8510 16 6 -5.8269 -3.3249 1.5820 17 6 -5.6292 -4.1848 0.3214 18 1 -6.3340 -3.8783 -0.4515 19 7 -5.8250 -5.6007 0.6423 20 6 -7.0811 -6.1444 0.6020 21 1 -7.9275 -5.5294 0.3341 22 6 -7.2667 -7.4862 0.9056 23 7 -6.2352 -8.2360 1.2316 24 14 -8.9801 -8.2282 0.8500 25 1 -9.2472 -8.7555 -0.5123 26 1 -9.0726 -9.3347 1.8360 27 1 -9.9826 -7.1842 1.1820 28 6 -4.1885 -3.9515 -0.1611 29 1 -4.0955 -3.9698 -1.2471 30 6 -3.2388 -4.9435 0.5437 31 7 0.4508 -2.5588 1.0314 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 3.1301 1.4425 0.0005 37 1 1.6767 1.9562 -0.8901 38 1 1.6767 1.9564 0.8900 39 1 1.6052 -0.2616 2.1370 40 1 3.1262 -0.6443 1.2953 41 1 3.5772 -3.1126 1.4244 42 1 2.1336 -5.3238 1.2267 43 1 -1.7132 -2.2749 -0.1144 44 1 -1.9807 -2.2987 1.6497 45 1 -3.8865 -3.2045 2.5596 46 1 -4.6417 -1.6163 2.2274 47 1 -6.6053 -2.5817 1.4092 48 1 -6.0951 -3.9579 2.4279 49 1 -5.0649 -6.1531 0.8833 50 1 -6.3649 -9.1735 1.4441 51 1 -3.6438 -5.2303 1.5141 52 1 -3.0840 -5.8254 -0.0780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026276870.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:24 Heat of formation + Delta-G solvation = 65.160331 kcal Electronic energy + Delta-G solvation = -31611.697165 eV Core-core repulsion = 27613.394612 eV Total energy + Delta-G solvation = -3998.302554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 6.12 seconds Orbital eigenvalues (eV) -42.81038 -40.14536 -38.18143 -36.82293 -34.97777 -33.19972 -32.37429 -30.93771 -30.89199 -29.21154 -28.31966 -27.47027 -27.12193 -25.39216 -23.90526 -23.18035 -22.04865 -21.63287 -20.61668 -19.62554 -19.22378 -18.74824 -17.57547 -17.16169 -16.92542 -16.21869 -15.62778 -15.47187 -15.02253 -14.81908 -14.55146 -14.18428 -13.98109 -13.89708 -13.46569 -13.34033 -13.17883 -12.93185 -12.84320 -12.68401 -12.47926 -12.40587 -12.29905 -12.16193 -11.75948 -11.50737 -11.39690 -11.25943 -11.18988 -10.75789 -10.61483 -10.56688 -10.42662 -10.33204 -10.18333 -10.07423 -9.87031 -9.66555 -9.54492 -9.32830 -9.14537 -8.84476 -8.26444 -6.89962 -5.69909 -2.99632 1.59383 2.07608 2.23652 3.23829 3.47831 3.52617 3.54771 3.60095 3.98997 4.19908 4.44941 4.50970 4.60248 4.65892 4.67436 4.78110 4.86748 4.92518 5.03578 5.10600 5.22007 5.27690 5.42534 5.50888 5.54279 5.57882 5.60214 5.64227 5.65686 5.68133 5.69334 5.75426 5.82031 5.86158 6.00593 6.03704 6.06870 6.16970 6.19961 6.36179 6.39005 6.47387 6.59076 6.60808 6.61386 6.70046 6.75562 6.86594 7.16921 7.73151 7.76581 7.85779 8.43901 8.48538 9.58917 10.16604 10.49995 11.52322 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018628 B = 0.002627 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.732670 B =10656.739780 C =11840.394698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.107 4.107 3 C -0.145 4.145 4 C 0.124 3.876 5 N -0.284 5.284 6 C -0.023 4.023 7 C -0.179 4.179 8 C -0.010 4.010 9 C 0.609 3.391 10 O -0.531 6.531 11 N -0.604 5.604 12 C 0.120 3.880 13 C -0.105 4.105 14 H 0.101 0.899 15 C -0.115 4.115 16 C -0.145 4.145 17 C 0.183 3.817 18 H 0.053 0.947 19 N -0.725 5.725 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.106 4.106 29 H 0.086 0.914 30 C 0.119 3.881 31 N -0.250 5.250 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.101 0.899 41 H 0.179 0.821 42 H 0.161 0.839 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.073 0.927 49 H 0.387 0.613 50 H 0.256 0.744 51 H 0.084 0.916 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.099 21.977 -0.957 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.126 4.126 3 C -0.203 4.203 4 C 0.004 3.996 5 N -0.072 5.072 6 C -0.166 4.166 7 C -0.207 4.207 8 C -0.170 4.170 9 C 0.395 3.605 10 O -0.406 6.406 11 N -0.338 5.338 12 C -0.003 4.003 13 C -0.124 4.124 14 H 0.119 0.881 15 C -0.152 4.152 16 C -0.186 4.186 17 C 0.072 3.928 18 H 0.071 0.929 19 N -0.368 5.368 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.126 4.126 29 H 0.105 0.895 30 C -0.002 4.002 31 N -0.086 5.086 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.196 0.804 42 H 0.179 0.821 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.223 0.777 50 H 0.066 0.934 51 H 0.102 0.898 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.394 22.259 -1.009 29.540 hybrid contribution -0.016 -1.205 0.210 1.223 sum 19.379 21.054 -0.798 28.626 Atomic orbital electron populations 1.22232 0.93412 1.05120 1.01590 1.21397 0.98189 0.96274 0.96768 1.21793 1.00878 0.94868 1.02787 1.22179 1.01131 0.75607 1.00720 1.45602 1.03859 1.07435 1.50353 1.22823 0.97970 0.86816 1.08942 1.21780 0.91465 0.99691 1.07731 1.22038 0.95244 0.89874 1.09819 1.16535 0.80452 0.86212 0.77262 1.90833 1.84967 1.13332 1.51502 1.48613 1.06471 1.08046 1.70639 1.22011 0.95570 0.81125 1.01631 1.23186 0.93153 0.98265 0.97773 0.88089 1.22407 0.97426 0.99809 0.95601 1.22968 0.95296 0.98836 1.01478 1.20666 0.91820 0.86442 0.93857 0.92890 1.42726 1.07619 1.04304 1.82198 1.19234 0.85939 0.92874 1.39171 0.91197 1.24755 0.97115 0.96569 1.02467 1.69665 1.28539 1.06646 1.52966 0.86220 0.84088 0.78789 0.77243 1.21790 1.21856 1.20842 1.23210 0.96534 0.93435 0.99427 0.89530 1.22413 0.80952 0.95060 1.01753 1.73563 1.03982 1.12467 1.18632 0.92618 0.92790 0.88925 0.90604 0.92495 0.91723 0.92140 0.88903 0.88080 0.80393 0.82143 0.91524 0.91293 0.91850 0.92508 0.93077 0.90831 0.77695 0.93445 0.89799 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 8.88 37.16 0.33 -0.92 16 2 C -0.11 -0.62 3.11 -90.62 -0.28 -0.90 16 3 C -0.15 -0.56 9.19 37.16 0.34 -0.22 16 4 C 0.12 0.67 5.89 -4.04 -0.02 0.65 16 5 N -0.28 -2.62 3.41 -61.33 -0.21 -2.83 16 6 C -0.02 -0.21 11.40 -17.17 -0.20 -0.40 16 7 C -0.18 -2.20 10.81 -39.37 -0.43 -2.62 16 8 C -0.01 -0.15 6.98 -82.76 -0.58 -0.72 16 9 C 0.61 11.06 7.85 -12.39 -0.10 10.96 16 10 O -0.53 -11.55 17.19 5.30 0.09 -11.46 16 11 N -0.60 -10.20 3.35 -171.36 -0.57 -10.78 16 12 C 0.12 1.61 4.63 -3.19 -0.01 1.60 16 13 C -0.10 -1.40 4.25 -87.27 -0.37 -1.77 16 14 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 15 C -0.11 -1.65 5.60 -25.17 -0.14 -1.79 16 16 C -0.15 -2.53 6.59 -25.69 -0.17 -2.70 16 17 C 0.18 3.57 3.23 -67.11 -0.22 3.35 16 18 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 19 N -0.73 -18.09 4.80 -52.63 -0.25 -18.35 16 20 C -0.24 -6.69 9.95 -15.06 -0.15 -6.84 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 24 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C -0.11 -1.77 3.97 -87.78 -0.35 -2.12 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 C 0.12 2.26 4.49 -2.26 -0.01 2.25 16 31 N -0.25 -3.04 6.69 33.42 0.22 -2.82 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.90 3.38 -51.93 -0.18 0.73 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.27 8.04 -51.93 -0.42 -0.15 16 41 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 42 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 43 H 0.07 0.84 5.83 -51.93 -0.30 0.53 16 44 H 0.07 0.91 7.48 -51.93 -0.39 0.52 16 45 H 0.06 1.00 7.35 -51.93 -0.38 0.62 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.49 7.92 -51.93 -0.41 1.08 16 49 H 0.39 10.30 5.29 -40.82 -0.22 10.09 16 50 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 51 H 0.08 1.79 6.36 -51.93 -0.33 1.46 16 52 H 0.08 1.77 8.06 -51.93 -0.42 1.35 16 LS Contribution 401.33 15.07 6.05 6.05 Total: -1.00 -34.27 401.33 -9.92 -44.19 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -8.50 Total: 8.94 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.45 Total: -2.66 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: -0.09 Total: -62.74 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.27 -9.92 -44.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026276870.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.352 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.13 seconds