Wall clock time and date at job start Wed Apr 1 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46790 * 2 1 4 4 C 1.53002 * 109.46749 * 120.00030 * 2 1 3 5 5 N 1.46500 * 109.46712 * 174.10843 * 4 2 1 6 6 N 1.28438 * 125.19304 * 95.29483 * 5 4 2 7 7 C 1.30864 * 110.92769 * 180.02562 * 6 5 4 8 8 C 1.39678 * 107.86388 * 359.97438 * 7 6 5 9 9 C 1.36608 * 125.18725 * 275.31519 * 5 4 2 10 10 C 1.47157 * 126.88212 * 359.97438 * 9 5 4 11 11 O 1.21631 * 120.00543 * 6.67254 * 10 9 5 12 12 N 1.34780 * 119.99681 * 186.67388 * 10 9 5 13 13 C 1.49619 * 126.07488 * 5.04590 * 12 10 9 14 14 C 1.51775 * 102.37350 * 154.28498 * 13 12 10 15 15 H 1.09000 * 111.74585 * 288.27034 * 14 13 12 16 16 C 1.51561 * 123.23194 * 151.78936 * 14 13 12 17 17 C 1.56336 * 101.81156 * 208.18082 * 16 14 13 18 18 C 1.54834 * 105.56457 * 24.66669 * 17 16 14 19 19 H 1.08996 * 110.48315 * 249.25558 * 18 17 16 20 20 N 1.46501 * 110.02056 * 126.87369 * 18 17 16 21 21 C 1.36930 * 119.99804 * 90.04083 * 20 18 17 22 22 H 1.08002 * 120.00522 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99798 * 180.02562 * 21 20 18 24 24 N 1.31613 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99693 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47384 * 359.97438 * 25 23 21 27 27 H 1.48507 * 109.46987 * 119.99820 * 25 23 21 28 28 H 1.48503 * 109.46841 * 239.99611 * 25 23 21 29 29 C 1.49706 * 104.55534 * 8.18037 * 18 17 16 30 30 H 1.09001 * 108.55237 * 76.53668 * 29 18 17 31 31 C 1.49294 * 126.06800 * 185.35894 * 12 10 9 32 32 H 1.08995 * 109.47196 * 295.04337 * 1 2 3 33 33 H 1.08998 * 109.46783 * 55.04737 * 1 2 3 34 34 H 1.09003 * 109.46787 * 175.04748 * 1 2 3 35 35 H 1.08994 * 109.47035 * 239.99743 * 2 1 3 36 36 H 1.08995 * 109.47340 * 299.99646 * 3 2 1 37 37 H 1.09000 * 109.47170 * 60.00279 * 3 2 1 38 38 H 1.09004 * 109.46848 * 179.97438 * 3 2 1 39 39 H 1.08998 * 109.47419 * 54.10821 * 4 2 1 40 40 H 1.09002 * 109.47063 * 294.10132 * 4 2 1 41 41 H 1.07997 * 126.07103 * 179.97438 * 7 6 5 42 42 H 1.07994 * 127.32048 * 180.02562 * 8 7 6 43 43 H 1.09007 * 110.80076 * 272.62406 * 13 12 10 44 44 H 1.08996 * 110.80311 * 36.12064 * 13 12 10 45 45 H 1.09002 * 110.95964 * 326.30846 * 16 14 13 46 46 H 1.09000 * 110.96134 * 90.05064 * 16 14 13 47 47 H 1.08997 * 110.19217 * 144.51537 * 17 16 14 48 48 H 1.09008 * 110.19051 * 266.28382 * 17 16 14 49 49 H 0.97003 * 119.99976 * 270.03566 * 20 18 17 50 50 H 0.97006 * 119.99659 * 180.02562 * 24 23 21 51 51 H 1.09000 * 110.39450 * 292.38654 * 31 12 10 52 52 H 1.08990 * 110.40001 * 54.79090 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4981 -0.8453 1.1805 6 7 4.3362 -0.0353 1.7201 7 6 5.5674 -0.4104 1.4836 8 6 5.5201 -1.5770 0.7169 9 6 4.1739 -1.8399 0.5323 10 6 3.5878 -2.9657 -0.2125 11 8 2.3868 -3.0120 -0.3994 12 7 4.3819 -3.9456 -0.6877 13 6 5.8526 -4.0815 -0.4486 14 6 6.0715 -5.5748 -0.6086 15 1 5.6562 -6.1358 0.2286 16 6 7.3826 -6.1770 -1.0728 17 6 6.9033 -7.4991 -1.7560 18 6 5.4369 -7.2397 -2.1799 19 1 4.7540 -7.8372 -1.5760 20 7 5.2652 -7.5421 -3.6030 21 6 4.9074 -8.8040 -3.9964 22 1 4.7522 -9.5764 -3.2577 23 6 4.7453 -9.0907 -5.3450 24 7 4.9349 -8.1495 -6.2453 25 14 4.2579 -10.8123 -5.8817 26 1 4.1074 -11.6796 -4.6859 27 1 2.9694 -10.7551 -6.6178 28 1 5.3102 -11.3707 -6.7684 29 6 5.2238 -5.7801 -1.9240 30 1 5.7079 -5.2142 -2.7200 31 6 3.9514 -5.0845 -1.5516 32 1 -0.3633 0.4350 0.9310 33 1 -0.3633 0.5887 -0.8423 34 1 -0.3633 -1.0239 -0.0887 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 3.1300 1.4425 0.0005 39 1 1.5931 -1.7139 1.3036 40 1 1.7654 -0.1501 2.1361 41 1 6.4614 0.0926 1.8213 42 1 6.3562 -2.1515 0.3467 43 1 6.4192 -3.5227 -1.1935 44 1 6.1124 -3.7583 0.5594 45 1 7.8786 -5.5245 -1.7913 46 1 8.0353 -6.3900 -0.2263 47 1 7.5257 -7.7218 -2.6226 48 1 6.9399 -8.3246 -1.0451 49 1 5.4049 -6.8485 -4.2665 50 1 4.8212 -8.3499 -7.1876 51 1 3.2993 -5.7578 -0.9953 52 1 3.4455 -4.7149 -2.4434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026277947.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:35 Heat of formation + Delta-G solvation = 73.976643 kcal Electronic energy + Delta-G solvation = -31211.053625 eV Core-core repulsion = 27213.133375 eV Total energy + Delta-G solvation = -3997.920250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.75214 -40.52161 -38.53028 -36.78136 -35.44538 -33.46594 -32.25004 -31.52326 -30.92644 -29.19239 -28.57658 -27.43116 -26.76728 -25.55513 -24.18763 -23.08055 -22.12007 -21.63743 -20.88437 -20.19249 -19.42521 -19.04465 -17.49237 -17.06945 -16.52321 -16.37981 -16.00992 -15.40577 -15.11119 -15.00826 -14.69190 -14.43857 -13.98641 -13.85117 -13.78576 -13.64207 -13.54172 -13.03605 -12.86070 -12.68838 -12.52959 -12.32081 -12.23795 -11.95128 -11.64036 -11.55618 -11.47464 -11.27558 -11.11113 -10.99227 -10.85180 -10.84278 -10.81053 -10.51582 -10.18042 -10.13301 -10.04385 -9.79492 -9.59795 -9.36503 -9.16494 -8.94757 -8.70937 -7.00252 -5.80012 -3.09106 1.13918 2.13762 2.45465 2.88256 3.11215 3.41428 3.47444 3.49429 4.02529 4.26500 4.30575 4.45608 4.55577 4.67396 4.76005 4.85291 4.93005 5.02944 5.05981 5.21512 5.22955 5.29365 5.32445 5.34680 5.38636 5.44176 5.52549 5.53714 5.56158 5.56690 5.66312 5.68996 5.82402 5.82941 5.87539 5.92467 5.98361 5.98819 6.04333 6.08612 6.11899 6.30610 6.31430 6.33583 6.46427 6.57032 6.59069 6.75964 7.02007 7.35391 7.68393 7.85247 8.02498 8.38064 9.49772 10.05877 10.40392 11.42461 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.002476 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.542217 B =11304.154925 C =12628.126168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C -0.147 4.147 4 C 0.125 3.875 5 N -0.253 5.253 6 N -0.277 5.277 7 C -0.008 4.008 8 C -0.200 4.200 9 C -0.029 4.029 10 C 0.601 3.399 11 O -0.541 6.541 12 N -0.608 5.608 13 C 0.108 3.892 14 C -0.128 4.128 15 H 0.088 0.912 16 C -0.100 4.100 17 C -0.141 4.141 18 C 0.198 3.802 19 H 0.056 0.944 20 N -0.721 5.721 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.121 4.121 30 H 0.077 0.923 31 C 0.139 3.861 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.072 0.928 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 16.805 17.145 24.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 C -0.204 4.204 4 C 0.005 3.995 5 N -0.040 5.040 6 N -0.109 5.109 7 C -0.184 4.184 8 C -0.229 4.229 9 C -0.158 4.158 10 C 0.388 3.612 11 O -0.419 6.419 12 N -0.342 5.342 13 C -0.014 4.014 14 C -0.148 4.148 15 H 0.106 0.894 16 C -0.139 4.139 17 C -0.182 4.182 18 C 0.087 3.913 19 H 0.074 0.926 20 N -0.362 5.362 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.141 4.141 30 H 0.096 0.904 31 C 0.019 3.981 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.202 0.798 42 H 0.186 0.814 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.094 0.906 48 H 0.073 0.927 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.091 0.909 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.956 17.489 17.582 24.818 hybrid contribution 0.442 -1.281 -1.046 1.712 sum -0.514 16.208 16.536 23.160 Atomic orbital electron populations 1.21726 0.93427 1.02714 1.02074 1.21425 0.96893 0.96502 0.97798 1.21861 1.01472 0.95274 1.01836 1.22267 0.72809 1.04153 1.00270 1.45771 1.07483 1.15880 1.34885 1.73195 1.00753 1.17908 1.19075 1.23583 0.94713 0.97458 1.02634 1.22744 0.95132 1.00276 1.04726 1.21374 0.92460 0.95963 1.05958 1.16498 0.85357 0.80385 0.78922 1.90806 1.13762 1.77910 1.59443 1.49491 1.09246 1.25131 1.50333 1.22239 0.80507 0.96894 1.01719 1.22668 0.98910 0.94246 0.98961 0.89355 1.21878 0.94660 0.97813 0.99528 1.23601 0.99297 0.95247 1.00080 1.19774 0.93651 0.90038 0.87818 0.92632 1.42520 1.82519 1.10981 1.00159 1.19284 1.38580 0.87973 0.91230 0.91100 1.24741 1.02573 0.97656 0.95903 1.69665 1.56028 1.31858 1.00457 0.86148 0.77774 0.84118 0.78328 1.20551 1.21884 1.21902 1.22118 0.94961 0.99660 0.97379 0.90437 1.21013 0.96766 0.86585 0.93783 0.92519 0.91905 0.91764 0.89908 0.92442 0.92456 0.92534 0.87259 0.88452 0.79827 0.81376 0.90351 0.89511 0.91445 0.92080 0.90596 0.92677 0.78163 0.93544 0.90920 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.19 37.16 0.34 -0.83 16 2 C -0.11 -1.07 3.00 -90.62 -0.27 -1.34 16 3 C -0.15 -1.36 9.07 37.16 0.34 -1.02 16 4 C 0.12 1.30 4.98 -4.04 -0.02 1.28 16 5 N -0.25 -3.03 2.95 -57.14 -0.17 -3.20 16 6 N -0.28 -3.23 11.21 30.59 0.34 -2.89 16 7 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16 8 C -0.20 -2.05 9.32 -38.98 -0.36 -2.42 16 9 C -0.03 -0.37 6.90 -82.06 -0.57 -0.93 16 10 C 0.60 8.65 7.84 -12.64 -0.10 8.55 16 11 O -0.54 -9.01 14.69 5.25 0.08 -8.93 16 12 N -0.61 -8.09 3.42 -172.78 -0.59 -8.68 16 13 C 0.11 1.12 4.90 -2.93 -0.01 1.11 16 14 C -0.13 -1.49 3.14 -89.32 -0.28 -1.77 16 15 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.10 -1.18 6.61 -25.67 -0.17 -1.35 16 17 C -0.14 -2.21 6.68 -23.97 -0.16 -2.37 16 18 C 0.20 3.58 3.37 -68.59 -0.23 3.35 16 19 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 20 N -0.72 -17.01 5.07 -54.07 -0.27 -17.29 16 21 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 25 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 C -0.12 -1.81 2.23 -91.23 -0.20 -2.02 16 30 H 0.08 1.23 7.78 -51.93 -0.40 0.83 16 31 C 0.14 2.09 6.83 -4.11 -0.03 2.06 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.04 7.64 -51.93 -0.40 0.65 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.61 7.19 -51.93 -0.37 0.24 16 39 H 0.11 1.22 6.79 -51.93 -0.35 0.87 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.17 1.35 5.01 -52.49 -0.26 1.08 16 43 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 44 H 0.09 0.75 5.87 -51.93 -0.30 0.45 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 48 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 49 H 0.38 9.73 7.68 -40.82 -0.31 9.41 16 50 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 406.65 15.07 6.13 6.13 Total: -1.00 -31.27 406.65 -9.67 -40.94 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.70 Total: 8.73 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.18 Total: -4.99 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.03 Total: -58.86 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.27 -9.67 -40.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026277947.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.917 kcal (2) G-P(sol) polarization free energy of solvation -31.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds