Wall clock time and date at job start Wed Apr 1 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.46915 * 2 1 4 4 C 1.53005 * 109.47161 * 119.99866 * 2 1 3 5 5 N 1.46506 * 109.46825 * 174.54876 * 4 2 1 6 6 N 1.28436 * 125.18723 * 276.53802 * 5 4 2 7 7 C 1.30869 * 110.92577 * 180.27972 * 6 5 4 8 8 C 1.39672 * 107.85926 * 359.71802 * 7 6 5 9 9 C 1.36602 * 125.18945 * 96.32961 * 5 4 2 10 10 C 1.47157 * 126.88322 * 359.97438 * 9 5 4 11 11 O 1.21629 * 120.00482 * 8.70847 * 10 9 5 12 12 N 1.34786 * 119.99790 * 188.71741 * 10 9 5 13 13 C 1.47211 * 126.70065 * 359.63965 * 12 10 9 14 14 C 1.55734 * 106.44310 * 148.32657 * 13 12 10 15 15 H 1.08997 * 112.38575 * 258.03932 * 14 13 12 16 16 C 1.54325 * 109.24157 * 132.62122 * 14 13 12 17 17 C 1.55050 * 103.93877 * 223.04131 * 16 14 13 18 18 C 1.55054 * 102.11304 * 40.05590 * 17 16 14 19 19 H 1.08996 * 110.65250 * 78.61388 * 18 17 16 20 20 N 1.46498 * 110.53656 * 201.33159 * 18 17 16 21 21 C 1.36931 * 120.00037 * 269.51430 * 20 18 17 22 22 H 1.08003 * 120.00007 * 0.02562 * 21 20 18 23 23 C 1.38816 * 120.00221 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99594 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99934 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47439 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47101 * 119.99922 * 25 23 21 28 28 H 1.48511 * 109.46833 * 239.99562 * 25 23 21 29 29 C 1.54325 * 103.93389 * 319.94475 * 18 17 16 30 30 H 1.08997 * 111.69194 * 262.78837 * 29 18 17 31 31 C 1.47213 * 126.69984 * 179.67020 * 12 10 9 32 32 H 1.09003 * 109.47542 * 304.96305 * 1 2 3 33 33 H 1.09002 * 109.47252 * 64.96744 * 1 2 3 34 34 H 1.09006 * 109.47217 * 184.96779 * 1 2 3 35 35 H 1.08999 * 109.47217 * 239.99854 * 2 1 3 36 36 H 1.09001 * 109.47628 * 64.85944 * 3 2 1 37 37 H 1.09001 * 109.47175 * 184.85853 * 3 2 1 38 38 H 1.09003 * 109.47193 * 304.85837 * 3 2 1 39 39 H 1.09000 * 109.47066 * 54.54676 * 4 2 1 40 40 H 1.08997 * 109.47058 * 294.54342 * 4 2 1 41 41 H 1.07996 * 126.07210 * 179.74550 * 7 6 5 42 42 H 1.08001 * 127.32306 * 179.97438 * 8 7 6 43 43 H 1.09000 * 110.07565 * 267.97519 * 13 12 10 44 44 H 1.09005 * 110.07456 * 29.51739 * 13 12 10 45 45 H 1.09004 * 110.52846 * 341.65515 * 16 14 13 46 46 H 1.09004 * 110.53393 * 104.28497 * 16 14 13 47 47 H 1.09003 * 110.90377 * 281.85240 * 17 16 14 48 48 H 1.08997 * 110.90718 * 158.26297 * 17 16 14 49 49 H 0.97003 * 119.99849 * 89.51416 * 20 18 17 50 50 H 0.97001 * 119.99466 * 180.02562 * 24 23 21 51 51 H 1.09001 * 110.07095 * 92.02678 * 31 12 10 52 52 H 1.09002 * 110.12251 * 330.51204 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4992 -0.8359 1.1854 6 7 4.1427 -1.7529 0.5574 7 6 5.4347 -1.5917 0.6899 8 6 5.6463 -0.4564 1.4755 9 6 4.3828 0.0185 1.7814 10 6 4.0565 1.2031 2.5912 11 8 2.9050 1.4172 2.9194 12 7 5.0337 2.0511 2.9691 13 6 6.4687 1.9322 2.6631 14 6 7.0184 3.3853 2.5558 15 1 7.1503 3.7040 1.5219 16 6 8.3210 3.4981 3.3756 17 6 8.1787 4.8515 4.1186 18 6 6.6824 4.8440 4.5248 19 1 6.5248 4.2138 5.4000 20 7 6.2132 6.2075 4.7836 21 6 6.2946 6.7314 6.0461 22 1 6.7051 6.1396 6.8510 23 6 5.8496 8.0232 6.2916 24 7 5.3490 8.7442 5.3108 25 14 5.9613 8.7381 8.0137 26 1 6.5570 7.7324 8.9295 27 1 6.8141 9.9537 7.9906 28 1 4.6011 9.0966 8.4900 29 6 5.9662 4.2496 3.2937 30 1 5.5590 5.0288 2.6494 31 6 4.8744 3.2766 3.7691 32 1 -0.3634 0.5889 0.8422 33 1 -0.3634 0.4348 -0.9311 34 1 -0.3634 -1.0239 0.0890 35 1 1.8933 -0.5138 -0.8900 36 1 1.7494 1.9307 0.9303 37 1 3.1264 1.4438 -0.0870 38 1 1.6072 1.9808 -0.8433 39 1 1.5991 -1.7168 1.2995 40 1 1.7586 -0.1541 2.1365 41 1 6.2011 -2.2240 0.2667 42 1 6.5943 -0.0381 1.7798 43 1 6.9779 1.3914 3.4608 44 1 6.6071 1.4161 1.7130 45 1 8.3965 2.6768 4.0883 46 1 9.1884 3.5112 2.7155 47 1 8.3966 5.6860 3.4519 48 1 8.8206 4.8813 4.9991 49 1 5.8449 6.7391 4.0607 50 1 5.0383 9.6470 5.4823 51 1 5.0080 3.0524 4.8274 52 1 3.8882 3.7091 3.6002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026277951.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:43 Heat of formation + Delta-G solvation = 58.787176 kcal Electronic energy + Delta-G solvation = -31523.703310 eV Core-core repulsion = 27525.124396 eV Total energy + Delta-G solvation = -3998.578915 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.78055 -40.21936 -38.39269 -36.77540 -35.29835 -33.45247 -32.26578 -31.53321 -30.94578 -29.18023 -28.52533 -27.42244 -26.80234 -25.24150 -24.50063 -22.96812 -22.18473 -21.74198 -20.79069 -20.13221 -19.42329 -19.14626 -17.47460 -16.96596 -16.76474 -16.32196 -15.77754 -15.49109 -15.44338 -15.00591 -14.53492 -14.35761 -14.05557 -13.90880 -13.85463 -13.60238 -13.13725 -13.04691 -12.97331 -12.71390 -12.45704 -12.40158 -12.16005 -11.87658 -11.67860 -11.53387 -11.29488 -11.23499 -11.08762 -11.05786 -10.83332 -10.80219 -10.63007 -10.42412 -10.27558 -10.21392 -9.99290 -9.93042 -9.68974 -9.36279 -9.18135 -8.91179 -8.71735 -6.98090 -5.79873 -3.08652 1.12212 2.14696 2.44301 2.98051 3.09287 3.41528 3.47495 3.49510 4.19623 4.27672 4.44210 4.47240 4.57789 4.64713 4.70303 4.77168 4.83677 4.98877 5.08169 5.16415 5.24883 5.31706 5.37358 5.37763 5.44307 5.46384 5.51553 5.55932 5.57241 5.61663 5.63871 5.73402 5.79077 5.81697 5.91407 5.92115 5.95004 6.01668 6.13222 6.15581 6.20491 6.25923 6.31774 6.37592 6.49848 6.55932 6.61273 6.76034 6.99497 7.41225 7.68196 7.85390 8.01707 8.38537 9.49995 10.06960 10.40854 11.42659 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.002623 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.089131 B =10671.390364 C =11904.896081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.152 4.152 4 C 0.112 3.888 5 N -0.251 5.251 6 N -0.280 5.280 7 C -0.007 4.007 8 C -0.206 4.206 9 C -0.026 4.026 10 C 0.604 3.396 11 O -0.540 6.540 12 N -0.599 5.599 13 C 0.085 3.915 14 C -0.097 4.097 15 H 0.088 0.912 16 C -0.116 4.116 17 C -0.143 4.143 18 C 0.184 3.816 19 H 0.058 0.942 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.108 4.108 30 H 0.089 0.911 31 C 0.120 3.880 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.075 0.925 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -20.730 -11.943 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C -0.209 4.209 4 C -0.008 4.008 5 N -0.039 5.039 6 N -0.112 5.112 7 C -0.182 4.182 8 C -0.234 4.234 9 C -0.155 4.155 10 C 0.392 3.608 11 O -0.418 6.418 12 N -0.331 5.331 13 C -0.037 4.037 14 C -0.117 4.117 15 H 0.106 0.894 16 C -0.154 4.154 17 C -0.184 4.184 18 C 0.073 3.927 19 H 0.076 0.924 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.129 4.129 30 H 0.107 0.893 31 C -0.002 4.002 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.202 0.798 42 H 0.189 0.811 43 H 0.095 0.905 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.094 0.906 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.123 -21.305 -12.053 24.570 hybrid contribution 0.711 1.136 0.965 1.652 sum -1.412 -20.169 -11.088 23.059 Atomic orbital electron populations 1.21763 0.93458 1.02141 1.02805 1.21427 0.96786 0.97191 0.97043 1.21935 1.00679 0.95160 1.03131 1.22509 0.72841 1.03313 1.02112 1.45760 1.07531 1.16826 1.33750 1.73178 1.07785 1.13489 1.16760 1.23582 0.92380 0.99388 1.02876 1.22822 0.97171 0.99026 1.04402 1.21337 0.90523 0.97747 1.05861 1.16450 0.84181 0.80955 0.79234 1.90756 1.18980 1.74720 1.57384 1.48217 1.07478 1.24807 1.52549 1.23235 0.80462 0.98300 1.01721 1.22924 0.95739 0.92988 1.00052 0.89367 1.22470 0.95550 0.99158 0.98252 1.23297 1.00300 0.95267 0.99507 1.21244 0.90549 0.87862 0.93056 0.92375 1.42446 1.73918 1.10394 1.09243 1.19272 1.34294 0.96598 0.86898 0.91129 1.24741 1.01599 0.97072 0.97452 1.69667 1.47482 1.10345 1.30475 0.86148 0.77207 0.78920 0.84092 1.20553 1.21895 1.21883 1.22943 0.94474 0.96761 0.98696 0.89256 1.22260 1.00667 0.82553 0.94718 0.91818 0.91853 0.92347 0.90603 0.90831 0.93399 0.92420 0.88662 0.85734 0.79800 0.81069 0.90521 0.89312 0.91618 0.92072 0.91529 0.92085 0.78179 0.93542 0.90636 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.19 37.16 0.34 -0.75 16 2 C -0.11 -1.00 3.12 -90.62 -0.28 -1.29 16 3 C -0.15 -1.70 8.06 37.16 0.30 -1.40 16 4 C 0.11 1.18 5.46 -4.04 -0.02 1.16 16 5 N -0.25 -3.05 3.09 -57.13 -0.18 -3.22 16 6 N -0.28 -3.33 11.90 30.59 0.36 -2.97 16 7 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 8 C -0.21 -2.10 9.31 -38.99 -0.36 -2.46 16 9 C -0.03 -0.33 5.82 -82.06 -0.48 -0.80 16 10 C 0.60 8.59 7.27 -12.64 -0.09 8.49 16 11 O -0.54 -8.85 13.08 5.25 0.07 -8.78 16 12 N -0.60 -7.91 3.32 -171.71 -0.57 -8.48 16 13 C 0.09 0.88 5.22 -2.20 -0.01 0.87 16 14 C -0.10 -1.13 4.01 -87.48 -0.35 -1.48 16 15 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.12 -1.33 6.37 -24.95 -0.16 -1.49 16 17 C -0.14 -2.25 6.60 -24.56 -0.16 -2.42 16 18 C 0.18 3.31 3.03 -66.15 -0.20 3.11 16 19 H 0.06 1.08 7.14 -51.93 -0.37 0.71 16 20 N -0.72 -17.02 5.21 -51.71 -0.27 -17.29 16 21 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.56 13.06 55.49 0.72 -26.84 16 25 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 C -0.11 -1.63 3.55 -88.53 -0.31 -1.94 16 30 H 0.09 1.46 7.81 -51.93 -0.41 1.06 16 31 C 0.12 1.80 6.54 -3.25 -0.02 1.78 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.95 6.75 -51.93 -0.35 0.60 16 37 H 0.05 0.60 6.98 -51.93 -0.36 0.24 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.12 1.47 5.85 -51.93 -0.30 1.17 16 41 H 0.19 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.17 1.33 5.03 -52.49 -0.26 1.07 16 43 H 0.08 0.71 7.20 -51.93 -0.37 0.34 16 44 H 0.09 0.77 4.85 -51.93 -0.25 0.52 16 45 H 0.07 0.69 7.22 -51.93 -0.37 0.31 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.38 9.75 7.61 -40.82 -0.31 9.44 16 50 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 51 H 0.08 1.17 7.13 -51.93 -0.37 0.80 16 52 H 0.08 1.36 7.93 -51.93 -0.41 0.94 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -31.36 398.68 -9.49 -40.85 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -8.35 Total: 9.59 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.27 Total: -5.89 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.07 Total: -58.80 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.07 Total: -8.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.36 -9.49 -40.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026277951.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.642 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds