Wall clock time and date at job start Wed Apr 1 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46703 * 2 1 4 4 C 1.53001 * 109.47530 * 120.00136 * 2 1 3 5 5 N 1.46498 * 109.46969 * 65.71852 * 4 2 1 6 6 N 1.28446 * 125.19286 * 273.74856 * 5 4 2 7 7 C 1.30862 * 110.92641 * 180.02562 * 6 5 4 8 8 C 1.39672 * 107.86496 * 359.77101 * 7 6 5 9 9 C 1.36603 * 125.18751 * 93.77624 * 5 4 2 10 10 C 1.47163 * 126.88475 * 359.93746 * 9 5 4 11 11 O 1.21631 * 119.99753 * 8.34821 * 10 9 5 12 12 N 1.34772 * 119.99964 * 188.34852 * 10 9 5 13 13 C 1.49629 * 126.07206 * 358.26727 * 12 10 9 14 14 C 1.51528 * 102.49192 * 154.37656 * 13 12 10 15 15 H 1.08994 * 111.12169 * 288.14178 * 14 13 12 16 16 C 1.51554 * 123.79521 * 151.80047 * 14 13 12 17 17 C 1.55471 * 102.21924 * 208.28701 * 16 14 13 18 18 C 1.56004 * 105.84041 * 24.93996 * 17 16 14 19 19 H 1.09000 * 110.64486 * 125.97287 * 18 17 16 20 20 N 1.46489 * 110.52837 * 248.66666 * 18 17 16 21 21 C 1.36937 * 120.00269 * 269.56943 * 20 18 17 22 22 H 1.07997 * 119.99815 * 359.97438 * 21 20 18 23 23 C 1.38817 * 120.00188 * 180.27447 * 21 20 18 24 24 N 1.31612 * 119.99984 * 179.72484 * 23 21 20 25 25 Si 1.86797 * 119.99906 * 359.72328 * 23 21 20 26 26 H 1.48508 * 109.47163 * 90.00092 * 25 23 21 27 27 H 1.48495 * 109.47215 * 209.99838 * 25 23 21 28 28 H 1.48496 * 109.47292 * 330.00187 * 25 23 21 29 29 C 1.49710 * 103.99037 * 7.29457 * 18 17 16 30 30 H 1.09006 * 108.54605 * 77.97421 * 29 18 17 31 31 C 1.49291 * 126.07290 * 178.29850 * 12 10 9 32 32 H 1.08992 * 109.47716 * 60.00203 * 1 2 3 33 33 H 1.09008 * 109.46701 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46997 * 299.99141 * 1 2 3 35 35 H 1.09006 * 109.47333 * 240.00522 * 2 1 3 36 36 H 1.09003 * 109.46790 * 184.95938 * 3 2 1 37 37 H 1.09000 * 109.47269 * 304.95576 * 3 2 1 38 38 H 1.08996 * 109.47329 * 64.95707 * 3 2 1 39 39 H 1.08999 * 109.46484 * 305.71793 * 4 2 1 40 40 H 1.08997 * 109.46777 * 185.72155 * 4 2 1 41 41 H 1.07997 * 126.06556 * 179.97438 * 7 6 5 42 42 H 1.07997 * 127.32732 * 180.27064 * 8 7 6 43 43 H 1.08997 * 110.79902 * 36.12540 * 13 12 10 44 44 H 1.08999 * 110.97254 * 272.69969 * 13 12 10 45 45 H 1.08993 * 110.96550 * 325.94459 * 16 14 13 46 46 H 1.09006 * 110.96151 * 89.65413 * 16 14 13 47 47 H 1.09001 * 109.87477 * 265.99075 * 17 16 14 48 48 H 1.08996 * 110.43025 * 144.18701 * 17 16 14 49 49 H 0.97005 * 120.00369 * 89.56560 * 20 18 17 50 50 H 0.97003 * 120.00490 * 179.97438 * 24 23 21 51 51 H 1.09003 * 110.39589 * 54.78906 * 31 12 10 52 52 H 1.08993 * 110.39378 * 292.38552 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6674 -2.1365 1.1823 6 7 0.5485 -2.6269 1.5790 7 6 0.5120 -3.9212 1.3894 8 6 1.7236 -4.3036 0.8092 9 6 2.4571 -3.1360 0.6890 10 6 3.8135 -2.9981 0.1349 11 8 4.4006 -1.9364 0.2213 12 7 4.4049 -4.0481 -0.4683 13 6 3.8256 -5.4196 -0.6173 14 6 4.5359 -5.9435 -1.8490 15 1 4.1752 -5.4486 -2.7507 16 6 4.8088 -7.4123 -2.1041 17 6 6.0938 -7.3614 -2.9778 18 6 6.7948 -6.0129 -2.6259 19 1 7.8290 -6.1839 -2.3272 20 7 6.7357 -5.0912 -3.7630 21 6 7.7418 -5.0844 -4.6919 22 1 8.5791 -5.7583 -4.5860 23 6 7.6886 -4.2070 -5.7663 24 7 8.6583 -4.1967 -6.6562 25 14 6.2407 -3.0409 -5.9491 26 1 6.5382 -1.7681 -5.2443 27 1 6.0055 -2.7659 -7.3893 28 1 5.0276 -3.6617 -5.3591 29 6 5.9978 -5.4798 -1.4762 30 1 6.2928 -6.0136 -0.5727 31 6 5.7548 -4.0497 -1.1059 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 -0.3633 0.5137 0.8901 35 1 1.8934 -0.5138 -0.8901 36 1 3.1263 1.4439 -0.0888 37 1 1.6059 1.9814 -0.8423 38 1 1.7509 1.9301 0.9310 39 1 1.5956 -0.2699 2.1362 40 1 3.1253 -0.6333 1.3018 41 1 -0.3105 -4.5767 1.6346 42 1 2.0248 -5.2989 0.5177 43 1 2.7495 -5.3693 -0.7831 44 1 4.0534 -6.0360 0.2523 45 1 5.0054 -7.9401 -1.1710 46 1 3.9826 -7.8743 -2.6446 47 1 5.8248 -7.3812 -4.0339 48 1 6.7490 -8.1993 -2.7400 49 1 5.9839 -4.4856 -3.8580 50 1 8.6210 -3.5839 -7.4072 51 1 6.5097 -3.7071 -0.3981 52 1 5.7550 -3.4215 -1.9966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026277953.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:48 Heat of formation + Delta-G solvation = 81.762374 kcal Electronic energy + Delta-G solvation = -31795.070201 eV Core-core repulsion = 27797.487565 eV Total energy + Delta-G solvation = -3997.582635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.76877 -40.63357 -38.59636 -36.79591 -35.49596 -33.47228 -32.26268 -31.59236 -31.14024 -29.27668 -28.94572 -27.42618 -26.77727 -25.85066 -24.25068 -22.92841 -22.12016 -21.65125 -20.91116 -20.12142 -19.47140 -19.02661 -17.85533 -17.40487 -16.54067 -16.24345 -16.00316 -15.48506 -15.11803 -15.00543 -14.72689 -14.57879 -14.16478 -14.01581 -13.88381 -13.65103 -13.54789 -13.04018 -12.84713 -12.61716 -12.53015 -12.47396 -12.24540 -12.09573 -11.85888 -11.65055 -11.47506 -11.28780 -11.15750 -11.06470 -10.95331 -10.83580 -10.80304 -10.50762 -10.38550 -10.15880 -10.06409 -9.76181 -9.59637 -9.37122 -9.18378 -8.97535 -8.74798 -7.32296 -5.80951 -3.16829 1.12254 2.11369 2.44300 2.85536 3.09845 3.33919 3.37462 3.43427 3.95123 4.25519 4.29374 4.42121 4.55310 4.64319 4.74380 4.78095 4.89502 4.98564 5.04221 5.11428 5.18454 5.26491 5.29947 5.35112 5.38546 5.39814 5.44804 5.48396 5.52613 5.53713 5.57008 5.63840 5.66895 5.77996 5.79817 5.81311 5.95858 5.96818 6.02402 6.05936 6.07162 6.21320 6.25026 6.30354 6.35437 6.44614 6.56478 6.65066 6.89716 7.31318 7.84239 7.95277 7.99618 8.38311 9.15959 9.88631 10.07459 11.37354 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003414 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.635648 B = 8199.487335 C = 9849.397172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.115 3.885 5 N -0.252 5.252 6 N -0.275 5.275 7 C -0.009 4.009 8 C -0.203 4.203 9 C -0.029 4.029 10 C 0.602 3.398 11 O -0.542 6.542 12 N -0.607 5.607 13 C 0.103 3.897 14 C -0.128 4.128 15 H 0.089 0.911 16 C -0.097 4.097 17 C -0.145 4.145 18 C 0.203 3.797 19 H 0.067 0.933 20 N -0.743 5.743 21 C -0.245 4.245 22 H 0.092 0.908 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.878 3.122 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.279 1.279 29 C -0.126 4.126 30 H 0.076 0.924 31 C 0.135 3.865 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.185 0.815 42 H 0.172 0.828 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.361 0.639 50 H 0.260 0.740 51 H 0.077 0.923 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.687 -0.120 17.906 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.201 4.201 4 C -0.005 4.005 5 N -0.039 5.039 6 N -0.108 5.108 7 C -0.184 4.184 8 C -0.232 4.232 9 C -0.158 4.158 10 C 0.389 3.611 11 O -0.420 6.420 12 N -0.341 5.341 13 C -0.018 4.018 14 C -0.147 4.147 15 H 0.108 0.892 16 C -0.135 4.135 17 C -0.186 4.186 18 C 0.093 3.907 19 H 0.085 0.915 20 N -0.385 5.385 21 C -0.374 4.374 22 H 0.110 0.890 23 C -0.188 4.188 24 N -0.580 5.580 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.146 4.146 30 H 0.094 0.906 31 C 0.015 3.985 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.202 0.798 42 H 0.189 0.811 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.078 0.922 49 H 0.194 0.806 50 H 0.070 0.930 51 H 0.095 0.905 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.750 1.556 18.279 24.842 hybrid contribution -0.650 0.108 -0.621 0.906 sum -17.401 1.664 17.658 24.846 Atomic orbital electron populations 1.21875 0.94260 1.02547 1.01797 1.21432 0.96828 0.97014 0.97462 1.21747 1.01853 0.94250 1.02259 1.22456 1.03678 0.74247 1.00102 1.45773 1.08967 1.08079 1.41089 1.73188 1.05443 1.12730 1.19424 1.23590 0.99479 0.91279 1.04069 1.22831 0.95166 0.98820 1.06375 1.21345 0.95505 0.89833 1.09070 1.16502 0.83470 0.83094 0.77987 1.90776 1.65396 1.26688 1.59182 1.49460 1.18747 1.10284 1.55609 1.22286 0.98804 0.82501 0.98224 1.22661 0.96179 0.98242 0.97602 0.89228 1.21675 0.98579 0.93239 1.00052 1.23663 0.95169 0.99074 1.00691 1.19999 0.96646 0.88807 0.85293 0.91502 1.42798 1.25411 1.43537 1.26755 1.19082 0.99745 1.17623 1.00995 0.89019 1.24641 0.97461 0.99316 0.97352 1.69686 1.32863 1.40587 1.14823 0.86662 0.83277 0.82046 0.77180 1.20972 1.21677 1.20493 1.22137 0.97130 0.94885 1.00445 0.90610 1.20990 0.81976 0.97594 0.97949 0.92537 0.92095 0.92392 0.90559 0.91778 0.91832 0.92319 0.88534 0.86027 0.79814 0.81116 0.89082 0.90324 0.91730 0.91796 0.90489 0.92220 0.80608 0.93017 0.90481 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.98 37.16 0.33 -1.09 16 2 C -0.11 -1.13 3.12 -90.62 -0.28 -1.41 16 3 C -0.14 -1.25 9.19 37.16 0.34 -0.91 16 4 C 0.11 1.26 5.38 -4.04 -0.02 1.24 16 5 N -0.25 -3.14 3.12 -57.14 -0.18 -3.31 16 6 N -0.28 -3.28 10.58 30.59 0.32 -2.96 16 7 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 8 C -0.20 -2.12 9.34 -38.98 -0.36 -2.48 16 9 C -0.03 -0.38 6.91 -82.05 -0.57 -0.95 16 10 C 0.60 9.00 7.85 -12.64 -0.10 8.90 16 11 O -0.54 -9.43 14.97 5.25 0.08 -9.36 16 12 N -0.61 -8.31 3.43 -172.93 -0.59 -8.90 16 13 C 0.10 1.08 5.11 -3.04 -0.02 1.06 16 14 C -0.13 -1.57 3.07 -89.45 -0.27 -1.85 16 15 H 0.09 1.32 7.88 -51.93 -0.41 0.92 16 16 C -0.10 -1.09 6.58 -26.15 -0.17 -1.27 16 17 C -0.15 -2.14 6.71 -23.81 -0.16 -2.30 16 18 C 0.20 3.48 3.47 -67.96 -0.24 3.24 16 19 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 20 N -0.74 -16.34 4.66 -53.45 -0.25 -16.59 16 21 C -0.24 -6.59 10.44 -15.06 -0.16 -6.74 16 22 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 25 Si 0.88 21.98 27.73 -169.99 -4.71 17.27 16 26 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 29 C -0.13 -1.76 2.26 -91.23 -0.21 -1.97 16 30 H 0.08 0.92 8.00 -51.93 -0.42 0.50 16 31 C 0.14 2.06 6.67 -4.12 -0.03 2.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.68 6.77 -51.92 -0.35 0.33 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.12 1.49 5.97 -51.93 -0.31 1.18 16 41 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.17 1.35 4.91 -52.49 -0.26 1.10 16 43 H 0.09 0.83 5.25 -51.93 -0.27 0.56 16 44 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.33 7.98 -51.93 -0.41 0.92 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.36 8.00 4.59 -40.82 -0.19 7.82 16 50 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 51 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 52 H 0.08 1.40 7.22 -51.93 -0.37 1.02 16 LS Contribution 400.57 15.07 6.04 6.04 Total: -1.00 -32.48 400.57 -9.23 -41.71 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.50 Total: 8.75 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.21 Total: -4.63 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.08 Total: -59.78 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.48 -9.23 -41.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026277953.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.473 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds