Wall clock time and date at job start Wed Apr 1 2020 04:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47091 * 2 1 4 4 C 1.52994 * 109.47061 * 119.99872 * 2 1 3 5 5 N 1.46501 * 109.47298 * 65.66348 * 4 2 1 6 6 N 1.28446 * 125.18843 * 265.04667 * 5 4 2 7 7 C 1.30863 * 110.92400 * 180.27914 * 6 5 4 8 8 C 1.39671 * 107.86529 * 359.71419 * 7 6 5 9 9 C 1.36594 * 125.19070 * 84.83644 * 5 4 2 10 10 C 1.47161 * 126.88710 * 0.02562 * 9 5 4 11 11 O 1.21635 * 119.99943 * 6.66843 * 10 9 5 12 12 N 1.34780 * 120.00304 * 186.67516 * 10 9 5 13 13 C 1.47209 * 126.70026 * 6.21166 * 12 10 9 14 14 C 1.53782 * 106.38143 * 148.69764 * 13 12 10 15 15 H 1.08991 * 112.38504 * 256.84982 * 14 13 12 16 16 C 1.54323 * 109.06546 * 132.42463 * 14 13 12 17 17 C 1.55055 * 103.94036 * 222.03690 * 16 14 13 18 18 C 1.55057 * 102.10579 * 40.05785 * 17 16 14 19 19 H 1.09002 * 110.53667 * 201.32503 * 18 17 16 20 20 N 1.46502 * 110.65608 * 78.61444 * 18 17 16 21 21 C 1.36939 * 120.00193 * 120.58014 * 20 18 17 22 22 H 1.07995 * 119.99526 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00134 * 179.97438 * 21 20 18 24 24 N 1.31613 * 120.00320 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99915 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47223 * 89.99824 * 25 23 21 27 27 H 1.48505 * 109.47065 * 209.99862 * 25 23 21 28 28 H 1.48499 * 109.47120 * 329.99719 * 25 23 21 29 29 C 1.54322 * 103.93728 * 319.94240 * 18 17 16 30 30 H 1.08995 * 111.69046 * 262.79277 * 29 18 17 31 31 C 1.47213 * 126.70270 * 186.18508 * 12 10 9 32 32 H 1.08995 * 109.46914 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46833 * 300.00413 * 1 2 3 34 34 H 1.08995 * 109.47289 * 59.99822 * 1 2 3 35 35 H 1.08997 * 109.46696 * 240.00055 * 2 1 3 36 36 H 1.09004 * 109.46695 * 184.98785 * 3 2 1 37 37 H 1.08998 * 109.46880 * 304.97752 * 3 2 1 38 38 H 1.08987 * 109.47251 * 64.98287 * 3 2 1 39 39 H 1.08998 * 109.47330 * 305.66104 * 4 2 1 40 40 H 1.09004 * 109.47503 * 185.66036 * 4 2 1 41 41 H 1.08000 * 126.06580 * 179.75392 * 7 6 5 42 42 H 1.07996 * 127.32487 * 179.97438 * 8 7 6 43 43 H 1.09001 * 110.07315 * 29.47005 * 13 12 10 44 44 H 1.09000 * 110.07298 * 267.92848 * 13 12 10 45 45 H 1.08999 * 110.53420 * 340.65441 * 16 14 13 46 46 H 1.08997 * 110.53012 * 103.42139 * 16 14 13 47 47 H 1.08998 * 110.90464 * 158.25503 * 17 16 14 48 48 H 1.08990 * 110.90312 * 281.85863 * 17 16 14 49 49 H 0.97008 * 119.99996 * 300.58332 * 20 18 17 50 50 H 0.97004 * 120.00674 * 179.97438 * 24 23 21 51 51 H 1.08999 * 110.06993 * 92.06959 * 31 12 10 52 52 H 1.09004 * 110.07335 * 330.53064 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6661 -2.1362 1.1831 6 7 0.6191 -2.6510 1.7201 7 6 0.5621 -3.9384 1.4927 8 6 1.6780 -4.2884 0.7291 9 6 2.3757 -3.1085 0.5374 10 6 3.6335 -2.9372 -0.2069 11 8 4.2084 -1.8654 -0.1911 12 7 4.1485 -3.9678 -0.9063 13 6 3.5195 -5.2794 -1.1321 14 6 4.0065 -5.7629 -2.5083 15 1 3.2481 -5.6444 -3.2821 16 6 4.4770 -7.2280 -2.3904 17 6 5.7790 -7.2710 -3.2313 18 6 6.4491 -5.9222 -2.8624 19 1 7.1662 -5.6292 -3.6292 20 7 7.1044 -6.0113 -1.5551 21 6 8.4503 -5.7829 -1.4469 22 1 9.0285 -5.5367 -2.3252 23 6 9.0711 -5.8667 -0.2082 24 7 10.3647 -5.6477 -0.1043 25 14 8.0708 -6.2919 1.3110 26 1 8.0546 -7.7651 1.4967 27 1 8.6824 -5.6495 2.5021 28 1 6.6802 -5.7989 1.1420 29 6 5.2729 -4.9245 -2.8114 30 1 5.1760 -4.3680 -3.7436 31 6 5.4496 -4.0015 -1.5942 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8932 -0.5138 -0.8900 36 1 3.1264 1.4438 -0.0894 37 1 1.6057 1.9814 -0.8420 38 1 1.7514 1.9299 0.9311 39 1 1.5962 -0.2692 2.1363 40 1 3.1253 -0.6343 1.3014 41 1 -0.2110 -4.6108 1.8341 42 1 1.9410 -5.2709 0.3660 43 1 2.4342 -5.1786 -1.1335 44 1 3.8294 -5.9812 -0.3578 45 1 4.6849 -7.4803 -1.3506 46 1 3.7303 -7.9040 -2.8069 47 1 6.4065 -8.1111 -2.9339 48 1 5.5526 -7.3142 -4.2966 49 1 6.5850 -6.2321 -0.7662 50 1 10.7986 -5.7059 0.7614 51 1 6.2143 -4.4021 -0.9287 52 1 5.7258 -2.9991 -1.9216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026277954.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:53 Heat of formation + Delta-G solvation = 69.024139 kcal Electronic energy + Delta-G solvation = -32268.817059 eV Core-core repulsion = 28270.682053 eV Total energy + Delta-G solvation = -3998.135007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.66601 -40.29378 -38.34905 -36.73889 -35.23350 -33.51576 -32.16953 -31.44204 -31.14316 -29.11193 -28.81790 -27.41375 -26.71376 -25.45821 -24.39281 -23.07435 -22.05794 -21.52718 -20.81455 -19.88809 -19.25400 -18.96415 -17.89647 -17.18030 -16.64018 -16.21049 -15.63400 -15.54253 -15.18115 -14.97040 -14.54743 -14.36346 -14.24818 -13.90078 -13.75821 -13.49978 -13.20242 -13.05433 -12.81867 -12.73528 -12.48955 -12.40862 -12.18565 -12.11690 -11.69960 -11.57501 -11.24687 -11.16343 -10.99324 -10.98365 -10.92561 -10.66861 -10.64096 -10.44751 -10.32066 -10.27042 -10.06115 -9.85146 -9.62742 -9.26925 -9.08065 -9.07005 -8.45647 -7.32838 -5.85387 -3.22153 1.24333 2.26623 2.53637 3.15052 3.24309 3.30892 3.32657 3.41007 4.30236 4.36401 4.49025 4.50510 4.55746 4.70707 4.79318 4.81603 4.85824 5.07091 5.12440 5.25713 5.30162 5.32871 5.36902 5.39886 5.45115 5.47534 5.53505 5.57890 5.61804 5.62036 5.65015 5.70675 5.79935 5.82527 5.89078 5.92158 5.97425 6.00183 6.04538 6.12155 6.25926 6.32993 6.37093 6.46148 6.50665 6.64481 6.65657 6.74297 6.81604 7.60197 7.90955 7.95820 8.18291 8.33835 9.10394 9.82450 10.00446 11.32498 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012258 B = 0.003473 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.703649 B = 8060.207858 C = 8579.118779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.120 3.880 5 N -0.252 5.252 6 N -0.278 5.278 7 C -0.008 4.008 8 C -0.202 4.202 9 C -0.027 4.027 10 C 0.600 3.400 11 O -0.543 6.543 12 N -0.597 5.597 13 C 0.092 3.908 14 C -0.101 4.101 15 H 0.085 0.915 16 C -0.115 4.115 17 C -0.143 4.143 18 C 0.183 3.817 19 H 0.077 0.923 20 N -0.732 5.732 21 C -0.252 4.252 22 H 0.094 0.906 23 C 0.012 3.988 24 N -0.928 5.928 25 Si 0.876 3.124 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 C -0.120 4.120 30 H 0.083 0.917 31 C 0.097 3.903 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.184 0.816 42 H 0.168 0.832 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.362 0.638 50 H 0.261 0.739 51 H 0.118 0.882 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.778 4.404 -2.311 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.040 5.040 6 N -0.110 5.110 7 C -0.184 4.184 8 C -0.231 4.231 9 C -0.155 4.155 10 C 0.387 3.613 11 O -0.421 6.421 12 N -0.328 5.328 13 C -0.031 4.031 14 C -0.120 4.120 15 H 0.103 0.897 16 C -0.153 4.153 17 C -0.183 4.183 18 C 0.071 3.929 19 H 0.096 0.904 20 N -0.373 5.373 21 C -0.382 4.382 22 H 0.112 0.888 23 C -0.185 4.185 24 N -0.575 5.575 25 Si 0.706 3.294 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.203 1.203 29 C -0.142 4.142 30 H 0.101 0.899 31 C -0.024 4.024 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.133 0.867 41 H 0.201 0.799 42 H 0.185 0.815 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.196 0.804 50 H 0.071 0.929 51 H 0.136 0.864 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.717 6.139 -1.719 22.633 hybrid contribution -0.329 -1.117 0.876 1.457 sum -22.046 5.022 -0.842 22.626 Atomic orbital electron populations 1.21858 0.94494 1.02229 1.01816 1.21414 0.96464 0.97022 0.97639 1.21733 1.01931 0.94226 1.02123 1.22344 1.03208 0.74312 1.00128 1.45741 1.14659 1.08561 1.34997 1.73181 1.06805 1.11984 1.19070 1.23559 1.00596 0.91627 1.02624 1.22717 0.96964 0.98501 1.04912 1.21420 0.98200 0.90184 1.05703 1.16453 0.82672 0.83191 0.78953 1.90780 1.62197 1.25251 1.63897 1.48222 1.20689 1.13201 1.50731 1.22727 0.98343 0.84525 0.97463 1.22606 0.97724 0.96024 0.95655 0.89703 1.22512 0.97639 0.94320 1.00855 1.23168 0.96201 1.00417 0.98492 1.21008 0.91737 0.91227 0.88925 0.90448 1.42852 1.06883 1.83669 1.03863 1.19128 0.82538 1.40899 0.95617 0.88846 1.24650 0.95413 1.01379 0.97051 1.69677 1.08322 1.55363 1.24108 0.86705 0.79780 0.78363 0.84527 1.20925 1.21625 1.20324 1.23149 0.96206 0.97220 0.97637 0.89899 1.22760 0.84193 1.00613 0.94859 0.92497 0.92386 0.92516 0.90374 0.91700 0.91952 0.92393 0.88417 0.86652 0.79868 0.81471 0.89826 0.90918 0.91486 0.92063 0.90934 0.91899 0.80374 0.92911 0.86426 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.06 37.16 0.34 -1.08 16 2 C -0.11 -1.13 3.12 -90.62 -0.28 -1.41 16 3 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 4 C 0.12 1.43 5.10 -4.04 -0.02 1.41 16 5 N -0.25 -3.45 2.95 -57.14 -0.17 -3.62 16 6 N -0.28 -3.65 11.18 30.59 0.34 -3.30 16 7 C -0.01 -0.09 12.03 -17.43 -0.21 -0.30 16 8 C -0.20 -2.47 9.28 -38.98 -0.36 -2.83 16 9 C -0.03 -0.39 6.89 -82.06 -0.57 -0.95 16 10 C 0.60 10.12 7.84 -12.64 -0.10 10.03 16 11 O -0.54 -10.37 14.99 5.25 0.08 -10.29 16 12 N -0.60 -9.50 3.32 -172.95 -0.57 -10.07 16 13 C 0.09 1.16 4.91 -3.25 -0.02 1.15 16 14 C -0.10 -1.21 3.91 -88.53 -0.35 -1.56 16 15 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 16 C -0.12 -1.39 6.17 -24.95 -0.15 -1.55 16 17 C -0.14 -1.99 6.61 -24.56 -0.16 -2.15 16 18 C 0.18 3.07 3.53 -66.15 -0.23 2.84 16 19 H 0.08 1.36 7.84 -51.93 -0.41 0.96 16 20 N -0.73 -15.54 2.79 -51.70 -0.14 -15.69 16 21 C -0.25 -6.63 10.38 -15.06 -0.16 -6.78 16 22 H 0.09 2.64 7.91 -52.49 -0.41 2.22 16 23 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 24 N -0.93 -28.33 13.97 55.49 0.78 -27.56 16 25 Si 0.88 21.54 27.74 -169.99 -4.71 16.82 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 29 C -0.12 -1.77 3.90 -88.53 -0.34 -2.11 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 C 0.10 1.71 6.39 -3.25 -0.02 1.69 16 32 H 0.06 0.64 7.16 -51.93 -0.37 0.27 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.43 8.14 -51.94 -0.42 0.01 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.12 1.54 6.48 -51.93 -0.34 1.21 16 41 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.17 1.69 5.16 -52.49 -0.27 1.42 16 43 H 0.08 0.88 5.41 -51.93 -0.28 0.59 16 44 H 0.07 0.93 7.04 -51.93 -0.37 0.57 16 45 H 0.07 0.88 7.00 -51.93 -0.36 0.52 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.36 7.72 4.89 -40.82 -0.20 7.52 16 50 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 51 H 0.12 2.48 5.22 -51.93 -0.27 2.21 16 52 H 0.07 1.33 7.87 -51.93 -0.41 0.93 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -31.72 397.50 -9.16 -40.88 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -8.35 Total: 11.15 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.39 Total: -4.32 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.23 Total: -60.24 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.72 -9.16 -40.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026277954.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.903 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds