Wall clock time and date at job start Wed Apr 1 2020 04:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 C 1.53001 * 109.46736 * 240.00232 * 2 1 3 5 5 N 1.46498 * 109.47200 * 120.00350 * 2 1 3 6 6 C 1.35030 * 124.88756 * 74.71521 * 5 2 1 7 7 C 1.35356 * 107.23079 * 180.26738 * 6 5 2 8 8 C 1.41504 * 105.50739 * 0.02562 * 7 6 5 9 9 C 1.47706 * 126.52271 * 180.02562 * 8 7 6 10 10 O 1.21565 * 119.99936 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00100 * 180.02562 * 9 8 7 12 12 C 1.48340 * 128.19637 * 0.02562 * 11 9 8 13 13 C 1.54469 * 104.30680 * 138.19159 * 12 11 9 14 14 H 1.08994 * 111.93424 * 263.68700 * 13 12 11 15 15 C 1.54150 * 108.79751 * 138.54453 * 13 12 11 16 16 C 1.54833 * 104.34395 * 224.04137 * 15 13 12 17 17 C 1.54834 * 102.73711 * 38.23230 * 16 15 13 18 18 H 1.08998 * 110.57106 * 80.53958 * 17 16 15 19 19 N 1.46495 * 110.45804 * 203.05827 * 17 16 15 20 20 C 1.36936 * 119.99852 * 269.91986 * 19 17 16 21 21 H 1.08004 * 120.00311 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00273 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00081 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99846 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47237 * 89.99612 * 24 22 20 26 26 H 1.48495 * 109.46952 * 210.00177 * 24 22 20 27 27 H 1.48505 * 109.46943 * 329.99683 * 24 22 20 28 28 C 1.54151 * 104.34274 * 321.77095 * 17 16 15 29 29 H 1.09006 * 112.65664 * 260.67663 * 28 17 16 30 30 C 1.48334 * 128.19812 * 179.69926 * 11 9 8 31 31 N 1.28474 * 124.88160 * 255.02546 * 5 2 1 32 32 H 1.09000 * 109.47124 * 299.99985 * 1 2 3 33 33 H 1.09001 * 109.47461 * 59.99860 * 1 2 3 34 34 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.46940 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47142 * 300.00336 * 3 2 1 37 37 H 1.08999 * 109.46765 * 60.00383 * 3 2 1 38 38 H 1.08999 * 109.47272 * 299.99524 * 4 2 1 39 39 H 1.08996 * 109.46915 * 60.00089 * 4 2 1 40 40 H 1.09001 * 109.46841 * 179.97438 * 4 2 1 41 41 H 1.08007 * 126.38424 * 0.24039 * 6 5 2 42 42 H 1.08001 * 127.25312 * 180.02562 * 7 6 5 43 43 H 1.08995 * 110.46849 * 256.89949 * 12 11 9 44 44 H 1.09004 * 110.46770 * 19.48976 * 12 11 9 45 45 H 1.09004 * 110.45669 * 342.75467 * 15 13 12 46 46 H 1.08998 * 110.46071 * 105.32493 * 15 13 12 47 47 H 1.09001 * 110.76042 * 279.91641 * 16 15 13 48 48 H 1.09010 * 110.75880 * 156.53985 * 16 15 13 49 49 H 0.97002 * 120.00182 * 89.91990 * 19 17 16 50 50 H 0.97002 * 120.00028 * 179.97438 * 23 22 20 51 51 H 1.09000 * 110.46918 * 340.51499 * 30 11 9 52 52 H 1.09000 * 110.46789 * 103.10272 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 2.0005 -2.0287 1.3767 7 6 2.5270 -2.2754 2.5990 8 6 2.8570 -1.0067 3.1319 9 6 3.4648 -0.7384 4.4511 10 8 3.7298 -1.6608 5.1971 11 7 3.7246 0.5292 4.8281 12 6 3.4767 1.7805 4.0709 13 6 2.9241 2.7628 5.1272 14 1 1.8346 2.7926 5.1249 15 6 3.5564 4.1494 4.8949 16 6 3.9388 4.6390 6.3131 17 6 4.4366 3.3432 6.9990 18 1 5.4651 3.1275 6.7097 19 7 4.3296 3.4610 8.4553 20 6 5.3783 3.9601 9.1807 21 1 6.2842 4.2672 8.6792 22 6 5.2767 4.0723 10.5606 23 7 6.2850 4.5515 11.2579 24 14 3.7096 3.5418 11.4280 25 1 3.8113 2.1080 11.8009 26 1 3.5207 4.3598 12.6528 27 1 2.5510 3.7360 10.5195 28 6 3.4885 2.2459 6.4761 29 1 2.6961 2.0034 7.1842 30 6 4.3200 1.0039 6.1011 31 7 2.5200 -0.1100 2.2265 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6766 -1.7489 -1.2493 39 1 1.6766 -0.2073 -2.1392 40 1 3.1299 -0.7208 -1.2496 41 1 1.6340 -2.7649 0.6765 42 1 2.6661 -3.2378 3.0689 43 1 4.4064 2.1600 3.6470 44 1 2.7399 1.6113 3.2856 45 1 4.4448 4.0630 4.2692 46 1 2.8333 4.8265 4.4402 47 1 3.0679 5.0403 6.8313 48 1 4.7361 5.3808 6.2638 49 1 3.5158 3.1856 8.9057 50 1 6.2138 4.6302 12.2221 51 1 4.2299 0.2391 6.8725 52 1 5.3649 1.2773 5.9545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026278087.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:58 Heat of formation + Delta-G solvation = 66.491457 kcal Electronic energy + Delta-G solvation = -31299.821494 eV Core-core repulsion = 27301.576662 eV Total energy + Delta-G solvation = -3998.244832 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.97657 -40.11041 -38.34497 -37.19304 -35.20232 -33.33604 -31.28981 -31.16458 -31.11833 -29.32549 -28.55549 -28.09210 -27.82951 -25.33342 -24.67769 -22.97699 -22.42438 -21.83118 -20.24901 -20.01107 -19.19094 -19.09950 -17.59447 -17.26423 -16.76868 -16.36194 -15.78233 -15.46578 -15.15577 -14.82705 -14.43635 -14.23208 -14.06298 -13.96023 -13.85974 -13.38177 -13.23730 -12.99812 -12.92154 -12.64686 -12.62648 -12.57553 -12.43206 -12.38310 -12.04283 -11.83171 -11.75335 -11.66607 -11.32064 -11.03953 -10.81214 -10.76875 -10.57111 -10.35163 -10.28869 -10.20818 -9.92801 -9.88953 -9.54670 -9.43619 -9.26183 -8.86596 -8.57007 -7.21900 -5.73676 -3.08848 1.48868 1.97479 2.06805 3.05171 3.41485 3.44850 3.45356 3.49321 3.81233 4.09765 4.20305 4.34144 4.46943 4.62760 4.66649 4.73172 4.82702 4.90715 4.96385 5.00104 5.05934 5.08676 5.16806 5.20940 5.33917 5.35289 5.42966 5.48595 5.53154 5.54549 5.57456 5.62896 5.66797 5.70411 5.72732 5.90528 5.92703 5.94462 6.06047 6.12188 6.22886 6.23616 6.33761 6.41186 6.47900 6.60938 6.67729 6.77827 6.97395 7.62887 7.75357 8.02797 8.27109 8.45733 9.24093 9.96929 10.16506 11.44663 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019352 B = 0.002493 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.495354 B =11230.074204 C =12027.745842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.275 5.275 6 C -0.020 4.020 7 C -0.179 4.179 8 C -0.011 4.011 9 C 0.620 3.380 10 O -0.538 6.538 11 N -0.612 5.612 12 C 0.100 3.900 13 C -0.101 4.101 14 H 0.082 0.918 15 C -0.115 4.115 16 C -0.141 4.141 17 C 0.189 3.811 18 H 0.067 0.933 19 N -0.745 5.745 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.883 3.117 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.277 1.277 28 C -0.112 4.112 29 H 0.084 0.916 30 C 0.114 3.886 31 N -0.253 5.253 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.063 0.937 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.082 0.918 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.000 -9.308 -30.577 34.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.217 4.217 5 N -0.064 5.064 6 C -0.162 4.162 7 C -0.207 4.207 8 C -0.170 4.170 9 C 0.407 3.593 10 O -0.414 6.414 11 N -0.344 5.344 12 C -0.023 4.023 13 C -0.121 4.121 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.182 4.182 17 C 0.079 3.921 18 H 0.084 0.916 19 N -0.387 5.387 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.132 4.132 29 H 0.103 0.897 30 C -0.007 4.007 31 N -0.089 5.089 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.194 0.806 42 H 0.178 0.822 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.101 0.899 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.671 -8.641 -30.422 34.070 hybrid contribution -1.156 -1.214 0.876 1.891 sum -13.827 -9.854 -29.546 34.077 Atomic orbital electron populations 1.22256 0.92221 1.03423 1.03882 1.21046 0.95036 0.94123 0.81247 1.21983 1.02547 0.92381 1.03658 1.22234 1.02608 1.01083 0.95791 1.45897 1.42676 1.04795 1.13040 1.22687 1.07307 0.86423 0.99803 1.21754 1.05311 0.98740 0.94919 1.21902 1.07750 0.91559 0.95826 1.16478 0.77809 0.81304 0.83735 1.90801 1.54133 1.43159 1.53259 1.48983 1.60950 1.04960 1.19545 1.22974 1.01310 0.82879 0.95108 1.22737 0.99851 0.95088 0.94443 0.89974 1.22384 0.99712 0.94838 0.98390 1.23176 1.01111 0.99949 0.93940 1.21116 0.96241 0.90617 0.84113 0.91558 1.42813 1.16777 1.77555 1.01506 1.19077 0.94428 1.34217 0.89473 0.89182 1.24667 0.97144 1.01154 0.96162 1.69700 1.30651 1.51571 1.06274 0.86572 0.84227 0.78438 0.79431 1.21041 1.21842 1.20333 1.23049 0.98408 0.95353 0.96388 0.89718 1.22581 0.96911 0.96086 0.85145 1.73490 1.14006 1.25940 0.95443 0.91286 0.89937 0.91555 0.91249 0.90522 0.90557 0.91344 0.89721 0.91236 0.80596 0.82211 0.91054 0.88256 0.91566 0.92221 0.91744 0.91774 0.80580 0.93105 0.89902 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.67 8.70 37.16 0.32 -0.35 16 2 C 0.17 0.90 1.21 -131.82 -0.16 0.74 16 3 C -0.15 -0.80 8.01 37.16 0.30 -0.50 16 4 C -0.16 -0.54 8.27 37.16 0.31 -0.23 16 5 N -0.27 -2.39 3.16 -48.62 -0.15 -2.54 16 6 C -0.02 -0.16 10.52 -17.17 -0.18 -0.34 16 7 C -0.18 -2.03 10.81 -39.37 -0.43 -2.46 16 8 C -0.01 -0.14 7.01 -82.76 -0.58 -0.72 16 9 C 0.62 10.22 7.93 -12.39 -0.10 10.12 16 10 O -0.54 -10.54 17.21 5.31 0.09 -10.45 16 11 N -0.61 -9.32 3.31 -170.28 -0.56 -9.88 16 12 C 0.10 1.25 6.26 -2.26 -0.01 1.24 16 13 C -0.10 -1.32 3.95 -88.14 -0.35 -1.67 16 14 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 15 C -0.11 -1.44 6.36 -25.16 -0.16 -1.60 16 16 C -0.14 -2.32 6.57 -24.80 -0.16 -2.48 16 17 C 0.19 3.53 3.06 -66.36 -0.20 3.33 16 18 H 0.07 1.28 7.13 -51.93 -0.37 0.91 16 19 N -0.74 -17.43 5.01 -51.91 -0.26 -17.69 16 20 C -0.24 -6.78 10.44 -15.06 -0.16 -6.93 16 21 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -29.50 13.97 55.49 0.78 -28.73 16 24 Si 0.88 22.42 27.74 -169.99 -4.71 17.71 16 25 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 28 C -0.11 -1.78 3.61 -88.34 -0.32 -2.10 16 29 H 0.08 1.43 7.83 -51.93 -0.41 1.02 16 30 C 0.11 1.86 6.57 -2.46 -0.02 1.84 16 31 N -0.25 -2.92 8.01 33.42 0.27 -2.65 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.51 7.99 -51.93 -0.42 0.09 16 38 H 0.07 0.18 7.27 -51.93 -0.38 -0.20 16 39 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.18 0.80 7.47 -52.48 -0.39 0.41 16 42 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 43 H 0.07 0.85 7.20 -51.93 -0.37 0.47 16 44 H 0.10 1.17 5.48 -51.93 -0.28 0.89 16 45 H 0.07 0.77 7.18 -51.93 -0.37 0.39 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 49 H 0.36 8.42 5.49 -40.82 -0.22 8.19 16 50 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 51 H 0.08 1.47 7.88 -51.93 -0.41 1.07 16 52 H 0.08 1.26 7.19 -51.93 -0.37 0.89 16 LS Contribution 406.04 15.07 6.12 6.12 Total: -1.00 -34.92 406.04 -9.10 -44.02 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.66 Total: 6.17 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -1.99 Total: -2.08 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: 0.07 Total: -61.49 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.71 Total: 17.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.92 -9.10 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026278087.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.512 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds