Wall clock time and date at job start Wed Apr 1 2020 04:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46973 * 2 1 4 4 C 1.53001 * 109.46736 * 240.00232 * 2 1 3 5 5 N 1.46498 * 109.47200 * 120.00350 * 2 1 3 6 6 C 1.35030 * 124.88756 * 74.71521 * 5 2 1 7 7 C 1.35356 * 107.23079 * 180.26738 * 6 5 2 8 8 C 1.41504 * 105.50739 * 0.02562 * 7 6 5 9 9 C 1.47706 * 126.52271 * 180.02562 * 8 7 6 10 10 O 1.21565 * 119.99936 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00100 * 180.02562 * 9 8 7 12 12 C 1.49627 * 126.07142 * 359.69051 * 11 9 8 13 13 C 1.51774 * 102.37423 * 154.27927 * 12 11 9 14 14 H 1.08998 * 111.32977 * 288.42206 * 13 12 11 15 15 C 1.51559 * 123.68702 * 151.93837 * 13 12 11 16 16 C 1.56337 * 101.81509 * 208.02607 * 15 13 12 17 17 C 1.54138 * 105.54301 * 25.05510 * 16 15 13 18 18 H 1.08993 * 109.83062 * 248.78930 * 17 16 15 19 19 N 1.46504 * 110.33530 * 126.63905 * 17 16 15 20 20 C 1.36937 * 119.99909 * 89.42685 * 19 17 16 21 21 H 1.08003 * 119.99970 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99672 * 179.97438 * 20 19 17 23 23 N 1.31626 * 119.99823 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00304 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47314 * 89.99814 * 24 22 20 26 26 H 1.48501 * 109.47193 * 210.00103 * 24 22 20 27 27 H 1.48503 * 109.46991 * 329.99695 * 24 22 20 28 28 C 1.49703 * 104.90250 * 7.58754 * 17 16 15 29 29 H 1.09004 * 108.54669 * 77.10698 * 28 17 16 30 30 C 1.49280 * 126.07531 * 179.97438 * 11 9 8 31 31 N 1.28474 * 124.88160 * 255.02546 * 5 2 1 32 32 H 1.09000 * 109.47124 * 299.99985 * 1 2 3 33 33 H 1.09001 * 109.47461 * 59.99860 * 1 2 3 34 34 H 1.09002 * 109.47312 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.46940 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47142 * 300.00336 * 3 2 1 37 37 H 1.08999 * 109.46765 * 60.00383 * 3 2 1 38 38 H 1.08999 * 109.47272 * 299.99524 * 4 2 1 39 39 H 1.08996 * 109.46915 * 60.00089 * 4 2 1 40 40 H 1.09001 * 109.46841 * 179.97438 * 4 2 1 41 41 H 1.08007 * 126.38424 * 0.24039 * 6 5 2 42 42 H 1.08001 * 127.25312 * 180.02562 * 7 6 5 43 43 H 1.08993 * 110.80296 * 272.62211 * 12 11 9 44 44 H 1.09005 * 110.80506 * 36.12192 * 12 11 9 45 45 H 1.08993 * 110.96228 * 326.15692 * 15 13 12 46 46 H 1.09008 * 110.95475 * 89.89694 * 15 13 12 47 47 H 1.08998 * 110.19276 * 144.51679 * 16 15 13 48 48 H 1.09001 * 110.18988 * 266.28890 * 16 15 13 49 49 H 0.96998 * 119.99904 * 269.42884 * 19 17 16 50 50 H 0.97003 * 119.99960 * 179.97438 * 23 22 20 51 51 H 1.08998 * 110.40087 * 292.39463 * 30 11 9 52 52 H 1.09006 * 110.39328 * 54.79626 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 2.0005 -2.0287 1.3767 7 6 2.5270 -2.2754 2.5990 8 6 2.8570 -1.0067 3.1319 9 6 3.4648 -0.7384 4.4511 10 8 3.7298 -1.6608 5.1971 11 7 3.7246 0.5292 4.8281 12 6 3.4603 1.7605 4.0199 13 6 3.3057 2.8252 5.0905 14 1 2.3701 2.7053 5.6367 15 6 3.6263 4.2902 4.8715 16 6 4.0148 4.7519 6.3137 17 6 4.4970 3.4800 7.0387 18 1 3.7831 3.2033 7.8144 19 7 5.8263 3.6957 7.6155 20 6 5.9491 4.1916 8.8860 21 1 5.0660 4.4232 9.4630 22 6 7.2086 4.3955 9.4327 23 7 7.3267 4.8726 10.6538 24 14 8.7361 3.9942 8.4351 25 1 9.1508 5.1919 7.6614 26 1 9.8338 3.5919 9.3507 27 1 8.4379 2.8797 7.5001 28 6 4.5508 2.4276 5.9753 29 1 5.4465 2.5869 5.3748 30 6 4.3326 0.9539 6.1236 31 7 2.5200 -0.1100 2.2265 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6766 -1.7489 -1.2493 39 1 1.6766 -0.2073 -2.1392 40 1 3.1299 -0.7208 -1.2496 41 1 1.6340 -2.7649 0.6765 42 1 2.6661 -3.2378 3.0689 43 1 4.3043 1.9838 3.3675 44 1 2.5412 1.6553 3.4435 45 1 4.4650 4.4075 4.1854 46 1 2.7511 4.8312 4.5114 47 1 4.8119 5.4940 6.2692 48 1 3.1447 5.1653 6.8236 49 1 6.6195 3.4874 7.0975 50 1 8.2068 5.0147 11.0360 51 1 3.6490 0.7522 6.9483 52 1 5.2825 0.4435 6.2828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026278088.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:03 Heat of formation + Delta-G solvation = 81.616933 kcal Electronic energy + Delta-G solvation = -31271.634060 eV Core-core repulsion = 27274.045118 eV Total energy + Delta-G solvation = -3997.588942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.97108 -40.44945 -38.53131 -37.20052 -35.41165 -33.40203 -31.30473 -31.15638 -31.11148 -29.37609 -28.63392 -28.09066 -27.82313 -25.70433 -24.52989 -22.89041 -22.44174 -21.79547 -20.25290 -20.02567 -19.34840 -19.04449 -17.61536 -17.39702 -16.53040 -16.38391 -16.21017 -15.19215 -14.93624 -14.81208 -14.63511 -14.31421 -14.20198 -14.05228 -13.68038 -13.47528 -13.32860 -13.03595 -12.90404 -12.76707 -12.63158 -12.62398 -12.43874 -12.34954 -11.92147 -11.87765 -11.75695 -11.70622 -11.52860 -11.14967 -10.85562 -10.82616 -10.77721 -10.44374 -10.34103 -9.97368 -9.94616 -9.71694 -9.52402 -9.42236 -9.25993 -8.90832 -8.53912 -7.25078 -5.74316 -3.09914 1.49836 1.97631 2.07334 2.94711 3.40244 3.43588 3.45619 3.48265 3.81278 4.10083 4.12380 4.20748 4.40266 4.47721 4.61850 4.78755 4.83605 4.88125 4.99068 5.01541 5.08703 5.11078 5.18349 5.21435 5.28727 5.34138 5.37323 5.49079 5.53044 5.55055 5.55559 5.57759 5.63680 5.70867 5.74231 5.81055 5.89595 5.98543 6.02839 6.12727 6.14403 6.24622 6.28314 6.41356 6.45383 6.59253 6.60788 6.76171 6.98179 7.54751 7.73537 8.01923 8.25434 8.44931 9.22891 9.95593 10.15195 11.44026 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.002502 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.345595 B =11186.366141 C =11873.206283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.275 5.275 6 C -0.020 4.020 7 C -0.179 4.179 8 C -0.012 4.012 9 C 0.615 3.385 10 O -0.538 6.538 11 N -0.613 5.613 12 C 0.125 3.875 13 C -0.127 4.127 14 H 0.087 0.913 15 C -0.100 4.100 16 C -0.140 4.140 17 C 0.203 3.797 18 H 0.062 0.938 19 N -0.746 5.746 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.883 3.117 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.125 4.125 29 H 0.073 0.927 30 C 0.135 3.865 31 N -0.252 5.252 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.073 0.927 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.884 -9.990 -28.863 34.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.086 3.914 3 C -0.205 4.205 4 C -0.217 4.217 5 N -0.064 5.064 6 C -0.163 4.163 7 C -0.207 4.207 8 C -0.172 4.172 9 C 0.401 3.599 10 O -0.413 6.413 11 N -0.347 5.347 12 C 0.003 3.997 13 C -0.147 4.147 14 H 0.105 0.895 15 C -0.138 4.138 16 C -0.181 4.181 17 C 0.093 3.907 18 H 0.081 0.919 19 N -0.388 5.388 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.203 1.203 28 C -0.145 4.145 29 H 0.091 0.909 30 C 0.014 3.986 31 N -0.088 5.088 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.194 0.806 42 H 0.178 0.822 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.083 0.917 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.092 0.908 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.822 -9.289 -28.534 33.923 hybrid contribution 1.217 -1.176 -0.539 1.776 sum -14.605 -10.465 -29.073 34.177 Atomic orbital electron populations 1.22254 0.92214 1.03413 1.03877 1.21043 0.95032 0.94118 0.81236 1.21979 1.02541 0.92377 1.03648 1.22235 1.02606 1.01080 0.95807 1.45884 1.42705 1.04786 1.13054 1.22687 1.07352 0.86436 0.99797 1.21751 1.05308 0.98736 0.94932 1.21889 1.07834 0.91561 0.95899 1.16530 0.78046 0.81503 0.83774 1.90800 1.53981 1.43268 1.53266 1.49650 1.61123 1.05249 1.18685 1.21899 1.01955 0.82946 0.92935 1.22676 0.99305 0.95159 0.97562 0.89476 1.21868 1.00517 0.93059 0.98381 1.23424 1.01145 1.00058 0.93444 1.19590 0.88657 0.90143 0.92314 0.91947 1.42878 1.01414 1.78690 1.15800 1.19087 0.94231 1.34556 0.89325 0.89156 1.24669 0.97050 1.01205 0.96205 1.69704 1.22803 1.51114 1.14564 0.86569 0.84279 0.78162 0.79659 1.21174 1.21791 1.20284 1.22114 0.98661 0.93670 1.00058 0.90885 1.20986 0.98568 0.94283 0.84759 1.73585 1.13821 1.25984 0.95365 0.91280 0.89946 0.91559 0.91282 0.90545 0.90536 0.91345 0.89724 0.91256 0.80619 0.82233 0.91381 0.89018 0.91663 0.92044 0.90667 0.92201 0.80575 0.93100 0.90844 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 8.70 37.16 0.32 -0.34 16 2 C 0.17 0.91 1.21 -131.82 -0.16 0.75 16 3 C -0.15 -0.81 8.01 37.16 0.30 -0.51 16 4 C -0.16 -0.55 8.27 37.16 0.31 -0.25 16 5 N -0.27 -2.39 3.16 -48.62 -0.15 -2.54 16 6 C -0.02 -0.17 10.52 -17.17 -0.18 -0.35 16 7 C -0.18 -2.03 10.81 -39.37 -0.43 -2.45 16 8 C -0.01 -0.16 6.98 -82.76 -0.58 -0.74 16 9 C 0.61 10.09 7.88 -12.39 -0.10 10.00 16 10 O -0.54 -10.46 17.29 5.31 0.09 -10.37 16 11 N -0.61 -9.33 3.42 -172.59 -0.59 -9.92 16 12 C 0.12 1.57 5.99 -2.92 -0.02 1.55 16 13 C -0.13 -1.65 3.13 -89.32 -0.28 -1.93 16 14 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 15 C -0.10 -1.25 6.62 -25.67 -0.17 -1.42 16 16 C -0.14 -2.26 6.68 -24.34 -0.16 -2.42 16 17 C 0.20 3.78 3.32 -68.97 -0.23 3.55 16 18 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 19 N -0.75 -17.35 4.87 -54.44 -0.27 -17.61 16 20 C -0.24 -6.76 10.44 -15.06 -0.16 -6.92 16 21 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 22 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 23 N -0.93 -29.45 13.97 55.49 0.78 -28.67 16 24 Si 0.88 22.32 27.74 -169.99 -4.71 17.60 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 27 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 28 C -0.13 -1.99 2.24 -91.23 -0.20 -2.19 16 29 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 30 C 0.13 2.20 6.82 -4.12 -0.03 2.17 16 31 N -0.25 -2.90 8.07 33.42 0.27 -2.63 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.51 7.99 -51.93 -0.42 0.10 16 38 H 0.07 0.18 7.27 -51.93 -0.38 -0.19 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.18 0.81 7.47 -52.48 -0.39 0.41 16 42 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.09 6.23 -51.93 -0.32 0.76 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.07 1.35 7.97 -51.93 -0.41 0.93 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.36 8.36 5.54 -40.82 -0.23 8.13 16 50 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 51 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 52 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 409.15 15.07 6.17 6.17 Total: -1.00 -34.67 409.15 -9.18 -43.86 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -8.91 Total: 5.59 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.86 Total: -1.46 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: 0.04 Total: -61.38 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.67 -9.18 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026278088.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.473 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds