Wall clock time and date at job start Wed Apr 1 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47263 * 2 1 4 4 C 1.53005 * 109.47172 * 240.00238 * 2 1 3 5 5 N 1.46500 * 109.47504 * 120.00042 * 2 1 3 6 6 C 1.35040 * 124.88335 * 74.99368 * 5 2 1 7 7 C 1.35365 * 107.22750 * 180.02562 * 6 5 2 8 8 C 1.41494 * 105.50498 * 0.02562 * 7 6 5 9 9 C 1.47712 * 126.52028 * 179.97438 * 8 7 6 10 10 O 1.21571 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00030 * 179.97438 * 9 8 7 12 12 C 1.49619 * 126.07571 * 359.69354 * 11 9 8 13 13 C 1.51752 * 102.38222 * 154.30089 * 12 11 9 14 14 H 1.09002 * 111.31739 * 288.40656 * 13 12 11 15 15 C 1.51560 * 123.24594 * 151.78204 * 13 12 11 16 16 C 1.56336 * 101.81838 * 208.17425 * 15 13 12 17 17 C 1.56002 * 105.76948 * 25.43190 * 16 15 13 18 18 H 1.09003 * 110.52162 * 125.58626 * 17 16 15 19 19 N 1.46494 * 110.52453 * 248.33387 * 17 16 15 20 20 C 1.36941 * 120.00330 * 269.56524 * 19 17 16 21 21 H 1.07998 * 119.99776 * 0.02562 * 20 19 17 22 22 C 1.38810 * 120.00059 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99953 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00192 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47415 * 89.99098 * 24 22 20 26 26 H 1.48500 * 109.47092 * 209.99505 * 24 22 20 27 27 H 1.48506 * 109.46968 * 329.99446 * 24 22 20 28 28 C 1.49706 * 103.98575 * 6.96576 * 17 16 15 29 29 H 1.08995 * 107.88403 * 77.73407 * 28 17 16 30 30 C 1.49293 * 126.06879 * 180.02562 * 11 9 8 31 31 N 1.28463 * 124.88842 * 255.02737 * 5 2 1 32 32 H 1.09008 * 109.47292 * 299.99920 * 1 2 3 33 33 H 1.09006 * 109.47561 * 59.99663 * 1 2 3 34 34 H 1.09006 * 109.47560 * 179.97438 * 1 2 3 35 35 H 1.09005 * 109.47628 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47395 * 300.00123 * 3 2 1 37 37 H 1.09001 * 109.47164 * 60.00154 * 3 2 1 38 38 H 1.08994 * 109.46845 * 299.99688 * 4 2 1 39 39 H 1.08997 * 109.47054 * 60.00141 * 4 2 1 40 40 H 1.09007 * 109.47053 * 180.02562 * 4 2 1 41 41 H 1.07997 * 126.38271 * 0.29780 * 6 5 2 42 42 H 1.07997 * 127.24615 * 180.02562 * 7 6 5 43 43 H 1.09003 * 110.80288 * 272.63712 * 12 11 9 44 44 H 1.09007 * 110.80357 * 36.13422 * 12 11 9 45 45 H 1.09004 * 110.95772 * 326.30561 * 15 13 12 46 46 H 1.08998 * 110.95988 * 89.99945 * 15 13 12 47 47 H 1.08998 * 110.18998 * 144.51286 * 16 15 13 48 48 H 1.09008 * 110.18330 * 266.35642 * 16 15 13 49 49 H 0.97003 * 120.00246 * 89.57496 * 19 17 16 50 50 H 0.97001 * 120.00424 * 180.02562 * 23 22 20 51 51 H 1.08997 * 110.39567 * 292.37590 * 30 11 9 52 52 H 1.08992 * 110.39794 * 54.66427 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 2.0054 -2.0291 1.3745 7 6 2.5351 -2.2760 2.5955 8 6 2.8617 -1.0071 3.1297 9 6 3.4702 -0.7388 4.4486 10 8 3.7398 -1.6616 5.1927 11 7 3.7275 0.5291 4.8267 12 6 3.4596 1.7605 4.0203 13 6 3.3041 2.8238 5.0918 14 1 2.3693 2.7014 5.6388 15 6 3.6277 4.2868 4.8638 16 6 4.0220 4.7554 6.3022 17 6 4.5194 3.4761 7.0435 18 1 5.5172 3.6351 7.4524 19 7 3.5819 3.1001 8.1045 20 6 3.7465 3.5948 9.3708 21 1 4.5673 4.2625 9.5871 22 6 2.8579 3.2389 10.3760 23 7 3.0164 3.7140 11.5931 24 14 1.4378 2.0845 10.0016 25 1 1.8680 0.6811 10.2266 26 1 0.2941 2.4009 10.8944 27 1 1.0222 2.2538 8.5859 28 6 4.5510 2.4280 5.9750 29 1 5.4457 2.5897 5.3739 30 6 4.3368 0.9536 6.1218 31 7 2.5200 -0.1100 2.2264 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.6766 -1.7488 -1.2493 39 1 1.6766 -0.2073 -2.1392 40 1 3.1300 -0.7216 -1.2491 41 1 1.6442 -2.7655 0.6720 42 1 2.6783 -3.2387 3.0634 43 1 4.3024 1.9864 3.3670 44 1 2.5399 1.6540 3.4448 45 1 4.4646 4.3981 4.1743 46 1 2.7531 4.8278 4.5027 47 1 4.8208 5.4952 6.2510 48 1 3.1541 5.1727 6.8129 49 1 2.8445 2.5005 7.9102 50 1 2.3956 3.4650 12.2957 51 1 3.6551 0.7493 6.9474 52 1 5.2870 0.4437 6.2798 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026278089.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:08 Heat of formation + Delta-G solvation = 81.863835 kcal Electronic energy + Delta-G solvation = -31694.045472 eV Core-core repulsion = 27696.467236 eV Total energy + Delta-G solvation = -3997.578236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.93126 -40.41988 -38.47713 -37.16521 -35.25294 -33.31703 -31.26692 -31.11856 -31.04270 -29.29959 -28.64954 -28.05978 -27.79632 -25.73556 -24.47888 -22.96872 -22.52382 -21.75384 -20.13774 -19.89357 -19.22691 -18.90826 -17.72481 -17.43275 -16.48440 -16.34094 -16.05976 -15.16664 -14.88696 -14.78631 -14.49028 -14.32220 -14.08488 -14.01567 -13.80261 -13.62768 -13.31880 -13.00903 -12.86660 -12.62056 -12.60059 -12.52456 -12.45352 -12.32658 -12.00813 -11.78402 -11.69044 -11.68449 -11.36645 -11.10362 -10.86049 -10.78647 -10.70437 -10.39451 -10.28572 -10.06904 -9.91678 -9.62640 -9.51220 -9.37958 -9.21842 -8.89377 -8.47478 -7.23824 -5.73889 -3.09123 1.54308 2.01814 2.11089 3.00466 3.41833 3.45784 3.50692 3.50942 3.84412 4.12950 4.17863 4.23638 4.44680 4.51389 4.62962 4.82595 4.86800 4.95746 5.01641 5.04618 5.11856 5.14278 5.21830 5.23643 5.30584 5.36806 5.45884 5.52321 5.54481 5.56160 5.56917 5.60345 5.67321 5.69925 5.74381 5.82765 5.93137 5.97806 6.12048 6.18184 6.21826 6.31101 6.34358 6.45691 6.46698 6.59132 6.64976 6.74953 6.98809 7.60320 7.78008 8.02907 8.31003 8.45620 9.23768 9.96675 10.16154 11.44462 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014768 B = 0.002936 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.593253 B = 9533.473409 C =10173.521900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.159 4.159 5 N -0.275 5.275 6 C -0.021 4.021 7 C -0.179 4.179 8 C -0.011 4.011 9 C 0.614 3.386 10 O -0.537 6.537 11 N -0.613 5.613 12 C 0.124 3.876 13 C -0.127 4.127 14 H 0.087 0.913 15 C -0.098 4.098 16 C -0.144 4.144 17 C 0.203 3.797 18 H 0.066 0.934 19 N -0.743 5.743 20 C -0.242 4.242 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.934 5.934 24 Si 0.878 3.122 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.126 4.126 29 H 0.073 0.927 30 C 0.134 3.866 31 N -0.252 5.252 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.177 0.823 42 H 0.160 0.840 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.361 0.639 50 H 0.259 0.741 51 H 0.076 0.924 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.988 -6.536 -31.539 32.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.086 3.914 3 C -0.205 4.205 4 C -0.217 4.217 5 N -0.065 5.065 6 C -0.163 4.163 7 C -0.207 4.207 8 C -0.171 4.171 9 C 0.401 3.599 10 O -0.413 6.413 11 N -0.347 5.347 12 C 0.002 3.998 13 C -0.147 4.147 14 H 0.106 0.894 15 C -0.136 4.136 16 C -0.185 4.185 17 C 0.092 3.908 18 H 0.084 0.916 19 N -0.385 5.385 20 C -0.372 4.372 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.581 5.581 24 Si 0.709 3.291 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.205 1.205 28 C -0.146 4.146 29 H 0.092 0.908 30 C 0.013 3.987 31 N -0.088 5.088 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.194 0.806 42 H 0.178 0.822 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.095 0.905 49 H 0.194 0.806 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.816 -5.806 -31.238 31.898 hybrid contribution -1.185 -1.748 -0.056 2.112 sum -4.000 -7.554 -31.294 32.440 Atomic orbital electron populations 1.22258 0.92233 1.03431 1.03895 1.21034 0.95045 0.94104 0.81232 1.21976 1.02476 0.92414 1.03659 1.22233 1.02556 1.01089 0.95805 1.45879 1.42755 1.04766 1.13059 1.22685 1.07362 0.86414 0.99851 1.21750 1.05282 0.98740 0.94935 1.21894 1.07765 0.91540 0.95916 1.16540 0.78104 0.81546 0.83759 1.90802 1.53869 1.43266 1.53325 1.49641 1.61107 1.05214 1.18739 1.21916 1.01844 0.83064 0.92958 1.22722 0.99683 0.94976 0.97274 0.89443 1.21817 1.00413 0.93311 0.98047 1.23817 1.01571 0.99311 0.93796 1.20010 0.94180 0.89891 0.86724 0.91623 1.42806 1.31723 1.56989 1.06985 1.19086 1.10787 1.23335 0.83991 0.89073 1.24641 0.98792 1.00032 0.95454 1.69694 1.39124 1.48339 1.00982 0.86648 0.83385 0.81839 0.77246 1.20882 1.21757 1.20475 1.22108 0.98584 0.93867 1.00030 0.90835 1.20937 0.98678 0.94121 0.84974 1.73582 1.13777 1.25970 0.95424 0.91251 0.89960 0.91554 0.91305 0.90566 0.90527 0.91356 0.89738 0.91272 0.80628 0.82238 0.91369 0.89133 0.91810 0.92064 0.92422 0.90528 0.80550 0.93095 0.90572 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 8.70 37.15 0.32 -0.46 16 2 C 0.17 1.00 1.21 -131.82 -0.16 0.84 16 3 C -0.15 -0.87 8.01 37.16 0.30 -0.57 16 4 C -0.16 -0.60 8.27 37.16 0.31 -0.29 16 5 N -0.28 -2.57 3.16 -48.62 -0.15 -2.73 16 6 C -0.02 -0.19 10.52 -17.16 -0.18 -0.37 16 7 C -0.18 -2.16 10.81 -39.37 -0.43 -2.59 16 8 C -0.01 -0.16 6.98 -82.77 -0.58 -0.74 16 9 C 0.61 10.71 7.88 -12.39 -0.10 10.61 16 10 O -0.54 -11.03 17.29 5.30 0.09 -10.94 16 11 N -0.61 -9.96 3.42 -172.59 -0.59 -10.55 16 12 C 0.12 1.66 5.98 -2.94 -0.02 1.64 16 13 C -0.13 -1.84 3.09 -89.33 -0.28 -2.11 16 14 H 0.09 1.47 7.88 -51.93 -0.41 1.06 16 15 C -0.10 -1.26 6.61 -25.67 -0.17 -1.43 16 16 C -0.14 -2.32 6.74 -23.33 -0.16 -2.47 16 17 C 0.20 3.75 3.46 -67.96 -0.24 3.51 16 18 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 19 N -0.74 -17.25 4.66 -53.45 -0.25 -17.50 16 20 C -0.24 -6.75 10.44 -15.06 -0.16 -6.91 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 24 Si 0.88 22.77 27.74 -169.99 -4.71 18.06 16 25 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.28 -6.86 6.52 56.52 0.37 -6.50 16 28 C -0.13 -1.99 2.25 -91.23 -0.21 -2.20 16 29 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 30 C 0.13 2.32 6.67 -4.12 -0.03 2.29 16 31 N -0.25 -3.09 8.07 33.42 0.27 -2.82 16 32 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.56 7.99 -51.93 -0.42 0.15 16 38 H 0.07 0.21 7.27 -51.93 -0.38 -0.17 16 39 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 41 H 0.18 0.91 7.46 -52.49 -0.39 0.52 16 42 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.18 6.23 -51.93 -0.32 0.86 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.08 1.41 7.98 -51.92 -0.41 1.00 16 49 H 0.36 8.51 4.59 -40.82 -0.19 8.32 16 50 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 51 H 0.08 1.51 7.22 -51.93 -0.37 1.14 16 52 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -34.81 406.99 -9.11 -43.92 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.82 Total: 6.31 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.85 Total: -1.15 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.05 Total: -62.34 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.06 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.81 -9.11 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026278089.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.783 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds