Wall clock time and date at job start Wed Apr 1 2020 04:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47764 * 2 1 4 4 C 1.53001 * 109.47167 * 239.99724 * 2 1 3 5 5 N 1.46504 * 109.46996 * 119.99925 * 2 1 3 6 6 C 1.35041 * 124.88493 * 74.99673 * 5 2 1 7 7 C 1.35355 * 107.22795 * 180.02562 * 6 5 2 8 8 C 1.41500 * 105.50878 * 359.97438 * 7 6 5 9 9 C 1.47710 * 126.52335 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99786 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99918 * 179.97438 * 9 8 7 12 12 C 1.46904 * 125.61925 * 0.03123 * 11 9 8 13 13 C 1.54207 * 107.63177 * 178.44286 * 12 11 9 14 14 H 1.09002 * 114.47666 * 214.84219 * 13 12 11 15 15 C 1.54843 * 108.04860 * 87.00245 * 13 12 11 16 16 C 1.54135 * 104.63218 * 214.54086 * 15 13 12 17 17 C 1.53865 * 106.49365 * 24.49984 * 16 15 13 18 18 H 1.09002 * 109.92224 * 238.95993 * 17 16 15 19 19 N 1.46504 * 110.08953 * 117.74103 * 17 16 15 20 20 C 1.36934 * 119.99617 * 86.92500 * 19 17 16 21 21 H 1.07998 * 120.00578 * 359.97438 * 20 19 17 22 22 C 1.38813 * 119.99842 * 179.97438 * 20 19 17 23 23 N 1.31626 * 120.00338 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00039 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.46991 * 89.99913 * 24 22 20 26 26 H 1.48497 * 109.47553 * 209.99673 * 24 22 20 27 27 H 1.48503 * 109.47259 * 330.00424 * 24 22 20 28 28 C 1.53710 * 107.03016 * 358.30531 * 17 16 15 29 29 H 1.09006 * 112.96749 * 214.88075 * 28 17 16 30 30 C 1.48442 * 125.24694 * 179.30501 * 11 9 8 31 31 N 1.28466 * 124.88390 * 255.32940 * 5 2 1 32 32 H 1.08996 * 109.46939 * 300.00639 * 1 2 3 33 33 H 1.09001 * 109.46978 * 60.00030 * 1 2 3 34 34 H 1.09002 * 109.47602 * 180.02562 * 1 2 3 35 35 H 1.08994 * 109.47414 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46848 * 300.00050 * 3 2 1 37 37 H 1.09000 * 109.46712 * 59.99473 * 3 2 1 38 38 H 1.09002 * 109.47041 * 300.00566 * 4 2 1 39 39 H 1.09000 * 109.47492 * 60.00176 * 4 2 1 40 40 H 1.09003 * 109.47041 * 180.02562 * 4 2 1 41 41 H 1.08003 * 126.38178 * 0.02562 * 6 5 2 42 42 H 1.08008 * 127.24806 * 179.97438 * 7 6 5 43 43 H 1.08994 * 109.82353 * 58.91835 * 12 11 9 44 44 H 1.08997 * 109.82244 * 297.96905 * 12 11 9 45 45 H 1.08999 * 110.40501 * 333.33223 * 15 13 12 46 46 H 1.09005 * 110.40457 * 95.63761 * 15 13 12 47 47 H 1.08999 * 110.04889 * 265.23857 * 16 15 13 48 48 H 1.09001 * 110.04786 * 143.75887 * 16 15 13 49 49 H 0.97000 * 120.00040 * 266.92125 * 19 17 16 50 50 H 0.96994 * 120.00119 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.07109 * 85.00585 * 30 11 9 52 52 H 1.09006 * 111.04375 * 322.51736 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0053 -2.0291 1.3746 7 6 2.5349 -2.2759 2.5956 8 6 2.8626 -1.0071 3.1294 9 6 3.4714 -0.7388 4.4482 10 8 3.7403 -1.6616 5.1926 11 7 3.7297 0.5289 4.8258 12 6 3.4569 1.7318 4.0277 13 6 3.8755 2.9549 4.8683 14 1 3.2475 3.8349 4.7292 15 6 5.3807 3.2173 4.6169 16 6 5.9176 3.7298 5.9677 17 6 4.9712 3.1820 7.0502 18 1 4.5310 4.0067 7.6107 19 7 5.7043 2.2966 7.9584 20 6 6.3580 2.8176 9.0430 21 1 6.3335 3.8812 9.2287 22 6 7.0522 1.9787 9.9038 23 7 7.6802 2.4793 10.9467 24 14 7.0941 0.1389 9.5832 25 1 8.2605 -0.1874 8.7237 26 1 7.2122 -0.5861 10.8738 27 1 5.8431 -0.2726 8.8968 28 6 3.8683 2.3930 6.3264 29 1 2.8970 2.4743 6.8145 30 6 4.3232 0.9317 6.1254 31 7 2.5148 -0.1096 2.2288 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 3.1301 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6766 -1.7490 -1.2492 39 1 1.6767 -0.2076 -2.1393 40 1 3.1300 -0.7217 -1.2490 41 1 1.6404 -2.7654 0.6737 42 1 2.6774 -3.2387 3.0639 43 1 2.3932 1.7887 3.7967 44 1 4.0357 1.7020 3.1046 45 1 5.8853 2.2938 4.3331 46 1 5.5105 3.9737 3.8427 47 1 5.9118 4.8197 5.9829 48 1 6.9291 3.3586 6.1329 49 1 5.7266 1.3413 7.7915 50 1 8.1649 1.8931 11.5484 51 1 5.4106 0.8779 6.0727 52 1 3.9517 0.3051 6.9363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026278090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:12 Heat of formation + Delta-G solvation = 69.045253 kcal Electronic energy + Delta-G solvation = -31726.667867 eV Core-core repulsion = 27728.533776 eV Total energy + Delta-G solvation = -3998.134091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.93473 -40.30680 -38.37651 -37.16820 -35.14206 -33.26618 -31.19658 -31.13167 -31.09662 -29.14291 -28.62821 -28.07790 -27.81868 -25.83084 -24.51642 -22.99508 -22.60461 -21.81404 -20.01519 -19.64215 -19.32856 -18.86862 -17.78848 -17.38010 -16.78329 -16.34657 -15.70872 -15.42701 -15.00373 -14.80043 -14.60504 -14.16873 -14.13005 -14.00574 -13.57626 -13.29172 -13.08690 -12.97401 -12.91277 -12.73092 -12.64480 -12.50801 -12.37556 -12.36152 -12.24986 -12.00804 -11.76725 -11.70192 -11.43862 -10.99039 -10.77739 -10.64874 -10.50169 -10.33787 -10.29924 -10.25560 -9.96557 -9.75340 -9.51041 -9.38451 -9.22283 -8.86870 -8.42365 -7.21993 -5.72386 -3.08061 1.54126 2.01125 2.10552 3.10010 3.45634 3.49659 3.51063 3.54609 3.83492 4.11609 4.22040 4.37704 4.50341 4.54083 4.65404 4.73766 4.83775 4.87468 4.96392 5.01621 5.07828 5.10318 5.19122 5.22446 5.35566 5.44304 5.47617 5.49193 5.53887 5.55515 5.58107 5.61661 5.63902 5.66090 5.72548 5.87209 5.93878 5.95312 6.03065 6.17172 6.23651 6.31713 6.36088 6.48862 6.50810 6.60502 6.62635 6.78237 7.04533 7.63138 7.78450 8.04246 8.31230 8.46813 9.25034 9.98090 10.16678 11.45760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018417 B = 0.002829 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.954376 B = 9896.388477 C =10990.619157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.168 3.832 3 C -0.147 4.147 4 C -0.159 4.159 5 N -0.275 5.275 6 C -0.021 4.021 7 C -0.179 4.179 8 C -0.012 4.012 9 C 0.611 3.389 10 O -0.536 6.536 11 N -0.604 5.604 12 C 0.122 3.878 13 C -0.103 4.103 14 H 0.104 0.896 15 C -0.116 4.116 16 C -0.144 4.144 17 C 0.189 3.811 18 H 0.063 0.937 19 N -0.750 5.750 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.876 3.124 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.274 1.274 28 C -0.109 4.109 29 H 0.090 0.910 30 C 0.115 3.885 31 N -0.250 5.250 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.176 0.824 42 H 0.160 0.840 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.363 0.637 50 H 0.259 0.741 51 H 0.078 0.922 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 -3.308 -29.642 34.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 C -0.205 4.205 4 C -0.217 4.217 5 N -0.065 5.065 6 C -0.164 4.164 7 C -0.207 4.207 8 C -0.172 4.172 9 C 0.398 3.602 10 O -0.411 6.411 11 N -0.338 5.338 12 C -0.001 4.001 13 C -0.122 4.122 14 H 0.122 0.878 15 C -0.154 4.154 16 C -0.185 4.185 17 C 0.078 3.922 18 H 0.081 0.919 19 N -0.394 5.394 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.706 3.294 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.200 1.200 28 C -0.128 4.128 29 H 0.109 0.891 30 C -0.007 4.007 31 N -0.086 5.086 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.194 0.806 42 H 0.177 0.823 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.093 0.907 49 H 0.198 0.802 50 H 0.069 0.931 51 H 0.096 0.904 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.252 -2.531 -29.363 33.656 hybrid contribution 0.131 -2.313 -0.048 2.317 sum -16.121 -4.844 -29.411 33.888 Atomic orbital electron populations 1.22250 0.92264 1.03404 1.03825 1.21030 0.95007 0.94107 0.81246 1.21970 1.02521 0.92407 1.03596 1.22235 1.02614 1.01086 0.95795 1.45857 1.42931 1.04742 1.12962 1.22679 1.07441 0.86429 0.99821 1.21759 1.05177 0.98778 0.94979 1.21899 1.07741 0.91532 0.96062 1.16555 0.78120 0.81655 0.83877 1.90816 1.53744 1.43212 1.53315 1.48587 1.61292 1.05171 1.18722 1.21932 1.00703 0.83599 0.93874 1.23191 0.97735 0.96686 0.94611 0.87809 1.22431 0.94005 1.00768 0.98192 1.22919 1.01544 0.99839 0.94187 1.20641 0.89289 0.92402 0.89827 0.91946 1.43074 1.61916 1.05053 1.29337 1.19075 1.23730 0.94610 0.99905 0.89126 1.24647 0.99884 0.97246 0.97151 1.69698 1.38205 1.34198 1.16058 0.86689 0.78161 0.87218 0.77355 1.21025 1.21617 1.19976 1.23246 1.00272 0.93932 0.95397 0.89130 1.22438 0.98556 0.95260 0.84427 1.73605 1.13645 1.26048 0.95315 0.91307 0.89979 0.91570 0.91300 0.90591 0.90541 0.91354 0.89737 0.91246 0.80640 0.82253 0.91530 0.91173 0.91942 0.92228 0.92551 0.90728 0.80209 0.93094 0.90359 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 8.70 37.16 0.32 -0.37 16 2 C 0.17 0.95 1.21 -131.82 -0.16 0.79 16 3 C -0.15 -0.82 8.01 37.16 0.30 -0.53 16 4 C -0.16 -0.59 8.27 37.16 0.31 -0.28 16 5 N -0.28 -2.51 3.16 -48.62 -0.15 -2.66 16 6 C -0.02 -0.19 10.52 -17.17 -0.18 -0.37 16 7 C -0.18 -2.15 10.81 -39.37 -0.43 -2.58 16 8 C -0.01 -0.18 6.98 -82.76 -0.58 -0.76 16 9 C 0.61 10.71 7.85 -12.39 -0.10 10.61 16 10 O -0.54 -11.21 17.19 5.30 0.09 -11.12 16 11 N -0.60 -9.78 3.35 -171.36 -0.57 -10.36 16 12 C 0.12 1.57 4.78 -3.19 -0.02 1.55 16 13 C -0.10 -1.30 4.25 -87.27 -0.37 -1.67 16 14 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.12 -1.58 5.60 -25.17 -0.14 -1.72 16 16 C -0.14 -2.42 6.59 -25.69 -0.17 -2.58 16 17 C 0.19 3.54 3.23 -67.11 -0.22 3.32 16 18 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 19 N -0.75 -17.75 4.61 -52.63 -0.24 -17.99 16 20 C -0.24 -6.87 10.44 -15.06 -0.16 -7.03 16 21 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.73 13.97 55.49 0.78 -28.96 16 24 Si 0.88 23.10 27.73 -169.99 -4.71 18.38 16 25 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.27 -6.97 6.52 56.52 0.37 -6.60 16 28 C -0.11 -1.72 3.97 -87.78 -0.35 -2.07 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 C 0.11 2.06 4.49 -2.26 -0.01 2.05 16 31 N -0.25 -3.01 8.44 33.42 0.28 -2.72 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.52 7.99 -51.93 -0.41 0.10 16 38 H 0.07 0.20 7.27 -51.93 -0.38 -0.17 16 39 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.18 0.89 7.47 -52.48 -0.39 0.50 16 42 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.07 0.81 7.61 -51.93 -0.40 0.41 16 44 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 45 H 0.06 0.92 7.35 -51.93 -0.38 0.54 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 1.44 7.92 -51.93 -0.41 1.03 16 49 H 0.36 8.67 3.16 -40.82 -0.13 8.54 16 50 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 51 H 0.08 1.54 6.36 -51.93 -0.33 1.21 16 52 H 0.08 1.61 8.06 -51.93 -0.42 1.19 16 LS Contribution 403.12 15.07 6.08 6.08 Total: -1.00 -35.36 403.12 -9.22 -44.58 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.72 Total: 6.31 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.04 Total: -1.54 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.09 Total: -62.69 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -4.71 Total: 18.38 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.36 -9.22 -44.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026278090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.626 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds