Wall clock time and date at job start Wed Apr 1 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47166 * 2 1 4 4 C 1.52998 * 109.47325 * 240.00121 * 2 1 3 5 5 N 1.46498 * 109.47073 * 119.99800 * 2 1 3 6 6 C 1.34264 * 125.75254 * 75.30766 * 5 2 1 7 7 C 1.38043 * 107.41807 * 180.10694 * 6 5 2 8 8 C 1.47427 * 126.41611 * 179.87261 * 7 6 5 9 9 O 1.21605 * 119.99988 * 6.07419 * 8 7 6 10 10 N 1.34771 * 120.00148 * 186.08025 * 8 7 6 11 11 C 1.49219 * 126.05874 * 355.64869 * 10 8 7 12 12 C 1.50323 * 104.33036 * 172.20339 * 11 10 8 13 13 H 1.09008 * 110.85866 * 279.87930 * 12 11 10 14 14 C 1.51004 * 124.69696 * 145.19972 * 12 11 10 15 15 C 1.56405 * 101.59203 * 204.34206 * 14 12 11 16 16 C 1.55949 * 105.78795 * 25.01428 * 15 14 12 17 17 H 1.09003 * 110.48898 * 126.21397 * 16 15 14 18 18 N 1.46500 * 110.60850 * 248.81359 * 16 15 14 19 19 C 1.36930 * 120.00230 * 271.66260 * 18 16 15 20 20 H 1.08005 * 120.00145 * 0.02562 * 19 18 16 21 21 C 1.38813 * 119.99921 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99879 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00155 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47021 * 60.00116 * 23 21 19 25 25 H 1.48501 * 109.47379 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47252 * 300.00460 * 23 21 19 27 27 C 1.50291 * 104.15708 * 7.54452 * 16 15 14 28 28 H 1.08998 * 109.99356 * 80.47524 * 27 16 15 29 29 C 1.49702 * 126.06272 * 175.70250 * 10 8 7 30 30 C 1.41292 * 107.16974 * 359.61136 * 7 6 5 31 31 N 1.30447 * 108.02258 * 0.23916 * 30 7 6 32 32 H 1.09003 * 109.47587 * 300.00058 * 1 2 3 33 33 H 1.08999 * 109.47226 * 59.99787 * 1 2 3 34 34 H 1.08999 * 109.47654 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47144 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47222 * 300.00215 * 3 2 1 37 37 H 1.09000 * 109.47232 * 60.00221 * 3 2 1 38 38 H 1.09006 * 109.46694 * 299.99969 * 4 2 1 39 39 H 1.08994 * 109.47326 * 59.99988 * 4 2 1 40 40 H 1.08999 * 109.47300 * 180.02562 * 4 2 1 41 41 H 1.07998 * 126.29265 * 359.96715 * 6 5 2 42 42 H 1.08992 * 110.36548 * 291.82146 * 11 10 8 43 43 H 1.09001 * 110.35883 * 54.13433 * 11 10 8 44 44 H 1.08999 * 110.99990 * 322.41887 * 14 12 11 45 45 H 1.08992 * 111.00154 * 86.22727 * 14 12 11 46 46 H 1.09000 * 110.18817 * 265.93754 * 15 14 12 47 47 H 1.08993 * 110.18519 * 144.09617 * 15 14 12 48 48 H 0.96998 * 119.99022 * 91.66558 * 18 16 15 49 49 H 0.97006 * 119.99624 * 179.97438 * 22 21 19 50 50 H 1.09000 * 110.84305 * 36.62882 * 29 10 8 51 51 H 1.09003 * 110.83987 * 273.01748 * 29 10 8 52 52 H 1.07998 * 125.98794 * 180.23460 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 2.0192 -2.0192 1.3895 7 6 2.5576 -2.2546 2.6387 8 6 2.7522 -3.5707 3.2740 9 8 2.5286 -4.5879 2.6462 10 7 3.1778 -3.6464 4.5505 11 6 3.5779 -2.4961 5.4127 12 6 3.7732 -3.1021 6.7744 13 1 2.8165 -3.2418 7.2779 14 6 4.8142 -2.6553 7.7728 15 6 4.9958 -3.9464 8.6366 16 6 4.5799 -5.1347 7.7163 17 1 5.3738 -5.8804 7.6738 18 7 3.3331 -5.7413 8.1892 19 6 3.3701 -6.7472 9.1175 20 1 4.3185 -7.0932 9.5013 21 6 2.1886 -7.3216 9.5659 22 7 1.0328 -6.8996 9.0985 23 14 2.2390 -8.6934 10.8327 24 1 2.8905 -8.1989 12.0722 25 1 0.8546 -9.1327 11.1421 26 1 3.0121 -9.8397 10.2907 27 6 4.3791 -4.5023 6.3677 28 1 5.3412 -4.3615 5.8752 29 6 3.3340 -4.8996 5.3544 30 6 2.8928 -0.9984 3.1919 31 7 2.5684 -0.0771 2.3272 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 1.6766 -1.7489 -1.2492 39 1 1.6767 -0.2074 -2.1392 40 1 3.1300 -0.7216 -1.2490 41 1 1.6621 -2.7663 0.6963 42 1 4.5002 -2.0481 5.0433 43 1 2.7813 -1.7529 5.4470 44 1 5.7445 -2.3856 7.2729 45 1 4.4447 -1.8280 8.3786 46 1 4.3500 -3.9061 9.5137 47 1 6.0373 -4.0524 8.9402 48 1 2.4814 -5.4302 7.8446 49 1 0.2072 -7.3013 9.4116 50 1 3.6906 -5.7189 4.7302 51 1 2.3978 -5.1641 5.8461 52 1 3.3392 -0.8305 4.1608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026297327.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:17 Heat of formation + Delta-G solvation = 76.268108 kcal Electronic energy + Delta-G solvation = -31008.003759 eV Core-core repulsion = 27010.182875 eV Total energy + Delta-G solvation = -3997.820885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.68096 -40.30733 -38.26789 -37.02103 -35.14411 -33.26333 -31.18122 -30.82418 -30.63131 -28.88253 -28.47531 -27.95639 -27.77631 -25.54908 -23.88015 -23.28769 -22.78813 -21.48392 -20.03630 -19.67391 -19.19836 -18.71525 -17.45579 -17.20213 -16.08651 -15.96789 -15.68119 -15.09669 -15.00394 -14.71024 -14.38001 -14.29500 -14.22943 -14.01401 -13.55743 -13.47337 -13.01623 -12.88213 -12.75997 -12.74583 -12.62934 -12.49943 -12.27264 -12.17659 -11.77502 -11.70078 -11.67627 -11.45920 -11.12535 -11.06724 -10.86212 -10.76506 -10.57718 -10.45459 -10.21498 -10.07848 -9.72260 -9.66926 -9.57164 -9.45126 -8.88427 -8.82081 -8.34178 -6.94337 -5.74663 -3.03456 1.47184 2.06093 2.14588 3.12599 3.45925 3.50731 3.51464 3.60726 3.94660 4.22632 4.27406 4.33379 4.53645 4.60696 4.61533 4.90293 4.95486 4.98673 5.02923 5.14087 5.17507 5.24222 5.26429 5.29404 5.34726 5.38069 5.45135 5.48201 5.54208 5.56318 5.63368 5.65813 5.72157 5.76973 5.87551 5.88387 5.98917 6.10928 6.20675 6.26540 6.33262 6.42307 6.45582 6.54903 6.59363 6.69680 6.71645 6.87987 7.09414 7.43201 7.72832 7.78685 8.43888 8.46103 9.55078 10.11939 10.46462 11.47701 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019765 B = 0.002270 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.289636 B =12333.294250 C =13017.101716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.143 4.143 4 C -0.163 4.163 5 N -0.353 5.353 6 C 0.125 3.875 7 C -0.283 4.283 8 C 0.607 3.393 9 O -0.555 6.555 10 N -0.620 5.620 11 C 0.116 3.884 12 C -0.130 4.130 13 H 0.092 0.908 14 C -0.097 4.097 15 C -0.145 4.145 16 C 0.194 3.806 17 H 0.055 0.945 18 N -0.718 5.718 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.120 4.120 28 H 0.076 0.924 29 C 0.134 3.866 30 C 0.066 3.934 31 N -0.297 5.297 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.183 0.817 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.052 0.948 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.077 0.923 51 H 0.084 0.916 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 18.506 -18.655 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 C -0.200 4.200 4 C -0.221 4.221 5 N -0.133 5.133 6 C -0.026 4.026 7 C -0.298 4.298 8 C 0.397 3.603 9 O -0.434 6.434 10 N -0.354 5.354 11 C -0.006 4.006 12 C -0.149 4.149 13 H 0.110 0.890 14 C -0.135 4.135 15 C -0.186 4.186 16 C 0.083 3.917 17 H 0.073 0.927 18 N -0.359 5.359 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.140 4.140 28 H 0.094 0.906 29 C 0.013 3.987 30 C -0.121 4.121 31 N -0.116 5.116 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.200 0.800 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.095 0.905 51 H 0.103 0.897 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 3.366 19.163 -19.333 27.429 hybrid contribution -0.343 -1.515 0.904 1.797 sum 3.023 17.649 -18.429 25.695 Atomic orbital electron populations 1.22285 0.92592 1.03456 1.03600 1.20845 0.94649 0.93925 0.81164 1.21910 1.02253 0.92660 1.03217 1.22285 1.02538 1.01267 0.95975 1.48822 1.46133 1.04136 1.14161 1.22793 0.96634 0.86395 0.96826 1.20242 1.17770 0.94264 0.97532 1.16852 0.76333 0.87302 0.79799 1.90766 1.53232 1.36711 1.62723 1.49580 1.65708 1.08781 1.11289 1.21559 0.99526 0.89062 0.90416 1.22289 1.01249 0.97249 0.94108 0.88992 1.21726 0.96986 0.98195 0.96580 1.23856 1.00493 0.94361 0.99882 1.20138 0.90809 0.92402 0.88395 0.92700 1.42426 1.02376 1.41604 1.49517 1.19195 0.92599 1.10037 1.15250 0.91187 1.24731 0.95362 1.00170 1.00577 1.69645 0.96700 1.44902 1.46796 0.86291 0.76411 0.82173 0.81424 1.21351 1.21802 1.21301 1.22466 0.97963 0.96966 0.96603 0.90612 1.21439 0.99820 0.85641 0.91811 1.24743 0.98112 0.89736 0.99474 1.77131 1.18052 1.22084 0.94329 0.91380 0.90167 0.91555 0.91540 0.90844 0.90837 0.91303 0.89830 0.91318 0.80018 0.91138 0.90893 0.92070 0.92076 0.90598 0.92914 0.78104 0.93467 0.90460 0.89735 0.78563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 8.72 37.15 0.32 -0.64 16 2 C 0.18 1.24 1.23 -131.82 -0.16 1.08 16 3 C -0.14 -0.90 8.07 37.16 0.30 -0.60 16 4 C -0.16 -0.86 8.28 37.16 0.31 -0.56 16 5 N -0.35 -3.65 3.41 -48.11 -0.16 -3.81 16 6 C 0.12 1.45 10.40 -16.56 -0.17 1.28 16 7 C -0.28 -3.87 6.09 -105.07 -0.64 -4.51 16 8 C 0.61 10.15 7.87 -12.52 -0.10 10.05 16 9 O -0.55 -11.12 17.22 5.27 0.09 -11.03 16 10 N -0.62 -9.70 3.43 -172.84 -0.59 -10.29 16 11 C 0.12 1.44 4.83 -3.87 -0.02 1.42 16 12 C -0.13 -1.84 2.71 -90.28 -0.24 -2.08 16 13 H 0.09 1.54 7.68 -51.92 -0.40 1.15 16 14 C -0.10 -1.26 6.70 -25.90 -0.17 -1.43 16 15 C -0.15 -2.36 6.74 -23.32 -0.16 -2.51 16 16 C 0.19 3.63 3.45 -67.70 -0.23 3.40 16 17 H 0.05 1.06 8.10 -51.93 -0.42 0.64 16 18 N -0.72 -17.10 4.84 -53.20 -0.26 -17.35 16 19 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 23 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.12 -1.92 2.63 -90.34 -0.24 -2.16 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 C 0.13 2.36 6.50 -3.31 -0.02 2.34 16 30 C 0.07 0.79 10.50 -16.98 -0.18 0.62 16 31 N -0.30 -3.54 11.56 30.86 0.36 -3.19 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.55 8.03 -51.93 -0.42 0.14 16 38 H 0.07 0.36 7.33 -51.93 -0.38 -0.02 16 39 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.18 1.80 7.52 -52.49 -0.39 1.40 16 42 H 0.07 0.74 7.52 -51.93 -0.39 0.35 16 43 H 0.07 0.81 6.43 -51.93 -0.33 0.48 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.38 9.77 6.12 -40.82 -0.25 9.52 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 50 H 0.08 1.43 8.06 -51.93 -0.42 1.02 16 51 H 0.08 1.71 6.89 -51.93 -0.36 1.35 16 52 H 0.20 1.93 4.56 -52.49 -0.24 1.69 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -33.13 406.49 -9.00 -42.14 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.61 Total: 8.64 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.65 Total: -1.37 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.07 Total: -61.75 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.13 -9.00 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026297327.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.404 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds